RNA–Protein interactions for RNA: ENST00000533523.5

CHMP4A-207, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 1 (best)

Gene CHMP4A, Length 1,266 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-207ENST00000533523 HMCN1Q96RW7 5635 aa6.16□□□□□ -1.42
CHMP4A-207ENST00000533523 SVIPQ8NHG7 77 aa6.11□□□□□ -1.43
CHMP4A-207ENST00000533523 C10orf95Q9H7T3 257 aa6.08□□□□□ -1.44
CHMP4A-207ENST00000533523 LCE1DQ5T752 114 aa6.03□□□□□ -1.44
CHMP4A-207ENST00000533523 PRO0628Q9UI54 55 aa5.99□□□□□ -1.45
CHMP4A-207ENST00000533523 ROMO1P60602 79 aa5.97□□□□□ -1.45
CHMP4A-207ENST00000533523 KRTAP5-10Q6L8G5 202 aa5.97□□□□□ -1.45
CHMP4A-207ENST00000533523 LCE5AQ5TCM9 118 aa5.94□□□□□ -1.46
CHMP4A-207ENST00000533523 TNP1P09430 55 aa5.93□□□□□ -1.46
CHMP4A-207ENST00000533523 PMAIP1Q13794 54 aa5.91□□□□□ -1.46
CHMP4A-207ENST00000533523 KRTAP19-3Q7Z4W3 81 aa5.89□□□□□ -1.47
CHMP4A-207ENST00000533523 KRTAP25-1Q3LHN0 102 aa5.88□□□□□ -1.47
CHMP4A-207ENST00000533523 KRTAP19-7Q3SYF9 63 aa5.88□□□□□ -1.47
CHMP4A-207ENST00000533523 MT1EP04732 61 aa5.87□□□□□ -1.47
CHMP4A-207ENST00000533523 MT4P47944 62 aa5.83□□□□□ -1.48
CHMP4A-207ENST00000533523 KRTAP5-7Q6L8G8 165 aa5.77□□□□□ -1.49
CHMP4A-207ENST00000533523 LCE3AQ5TA76 89 aa5.74□□□□□ -1.49
CHMP4A-207ENST00000533523 LCE4AQ5TA78 99 aa5.71□□□□□ -1.5
CHMP4A-207ENST00000533523 KRTAP4-6Q9BYQ5 205 aa5.69□□□□□ -1.5
CHMP4A-207ENST00000533523 MT1GP13640 62 aa5.68□□□□□ -1.5
CHMP4A-207ENST00000533523 KRTAP19-5Q3LI72 72 aa5.68□□□□□ -1.5
CHMP4A-207ENST00000533523 KRTAP23-1A1A580 65 aa5.67□□□□□ -1.5
CHMP4A-207ENST00000533523 PP632Q6XCG6 107 aa5.67□□□□□ -1.5
CHMP4A-207ENST00000533523 KRTAP5-4Q6L8H1 288 aa5.64□□□□□ -1.51
CHMP4A-207ENST00000533523 KRTAP5-3Q6L8H2 238 aa5.63□□□□□ -1.51
CHMP4A-207ENST00000533523 MT1MQ8N339 61 aa5.62□□□□□ -1.51
CHMP4A-207ENST00000533523 KTN1-AS1Q86SY8 53 aa5.59□□□□□ -1.51
CHMP4A-207ENST00000533523 PRAC1Q96KF2 57 aa5.59□□□□□ -1.51
CHMP4A-207ENST00000533523 MT1LQ93083 61 aa5.55□□□□□ -1.52
CHMP4A-207ENST00000533523 KRTAP12-3P60328 96 aa5.51□□□□□ -1.53
CHMP4A-207ENST00000533523 KRTAP4-3Q9BYR4 195 aa5.51□□□□□ -1.53
CHMP4A-207ENST00000533523 SPRR5A0A1B0GTR4 108 aa5.47□□□□□ -1.53
CHMP4A-207ENST00000533523 KRTAP20-2Q3LI61 65 aa5.34□□□□□ -1.55
CHMP4A-207ENST00000533523 KRTAP15-1Q3LI76 137 aa5.34□□□□□ -1.55
CHMP4A-207ENST00000533523 LOC100996750A0A140TA64 210 aa5.31□□□□□ -1.56
CHMP4A-207ENST00000533523 KRTAP4-7Q9BYR0 210 aa5.28□□□□□ -1.56
CHMP4A-207ENST00000533523 AHNAKQ09666 5890 aaKnown RBP5.25□□□□□ -1.57
CHMP4A-207ENST00000533523 MUC5ACP98088 5654 aa5.19□□□□□ -1.58
CHMP4A-207ENST00000533523 KRTAP19-4Q3LI73 84 aa5.17□□□□□ -1.58
CHMP4A-207ENST00000533523 MUC5BQ9HC84 5762 aaPredicted RBP5.16□□□□□ -1.58
CHMP4A-207ENST00000533523 KRTAP5-5Q701N2 237 aaPredicted RBP5.16□□□□□ -1.58
CHMP4A-207ENST00000533523 SYNE1Q8NF91 8797 aaKnown RBP5.13□□□□□ -1.59
CHMP4A-207ENST00000533523 KRTAP12-4P60329 112 aa5.13□□□□□ -1.59
CHMP4A-207ENST00000533523 LCE3CQ5T5A8 94 aa5.13□□□□□ -1.59
CHMP4A-207ENST00000533523 H3BS24 57 aa5.03□□□□□ -1.6
CHMP4A-207ENST00000533523 KRTAP4-11Q9BYQ6 195 aa5□□□□□ -1.61
CHMP4A-207ENST00000533523 KRTAP5-8O75690 187 aa4.94□□□□□ -1.62
CHMP4A-207ENST00000533523 KRTAP5-2Q701N4 177 aa4.85□□□□□ -1.63
CHMP4A-207ENST00000533523 KRTAP9-6A8MVA2 160 aa4.84□□□□□ -1.63
CHMP4A-207ENST00000533523 OBSCNQ5VST9 7968 aa4.72□□□□□ -1.65
CHMP4A-207ENST00000533523 KRTAP6-1Q3LI64 71 aa4.72□□□□□ -1.65
CHMP4A-207ENST00000533523 MT1AP04731 61 aa4.71□□□□□ -1.66
CHMP4A-207ENST00000533523 KRTAP4-12Q9BQ66 201 aa4.62□□□□□ -1.67
CHMP4A-207ENST00000533523 KRTAP9-9Q9BYP9 154 aa4.61□□□□□ -1.67
CHMP4A-207ENST00000533523 KRTAP6-2Q3LI66 62 aa4.58□□□□□ -1.68
CHMP4A-207ENST00000533523 LUZP6Q538Z0 58 aa4.58□□□□□ -1.68
CHMP4A-207ENST00000533523 KRTAP9-4Q9BYQ2 154 aa4.57□□□□□ -1.68
CHMP4A-207ENST00000533523 KRTAP5-1Q6L8H4 278 aa4.48□□□□□ -1.69
CHMP4A-207ENST00000533523 MT3P25713 68 aa4.32□□□□□ -1.72
CHMP4A-207ENST00000533523 NDUFAF8A1L188 74 aa4.29□□□□□ -1.72
CHMP4A-207ENST00000533523 KRTAP4-2Q9BYR5 136 aa4.14□□□□□ -1.75
CHMP4A-207ENST00000533523 LCE1EQ5T753 118 aa4.02□□□□□ -1.77
CHMP4A-207ENST00000533523 A0A0A0MQY5 61 aa3.92□□□□□ -1.78
CHMP4A-207ENST00000533523 LCE1BQ5T7P3 118 aa3.89□□□□□ -1.79
CHMP4A-207ENST00000533523 LCE3DQ9BYE3 92 aa3.81□□□□□ -1.8
CHMP4A-207ENST00000533523 LCE1CQ5T751 118 aa3.74□□□□□ -1.81
CHMP4A-207ENST00000533523 LCE3EQ5T5B0 92 aa3.68□□□□□ -1.82
CHMP4A-207ENST00000533523 KRTAP5-11Q6L8G4 156 aa3.57□□□□□ -1.84
CHMP4A-207ENST00000533523 INE1O15225 51 aa3.53□□□□□ -1.84
CHMP4A-207ENST00000533523 PHGR1C9JFL3 82 aa3.42□□□□□ -1.86
CHMP4A-207ENST00000533523 LCE1FQ5T754 118 aa3.39□□□□□ -1.87
CHMP4A-207ENST00000533523 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.35□□□□□ -1.87
CHMP4A-207ENST00000533523 PRM1P04553 51 aa3.1□□□□□ -1.91
CHMP4A-207ENST00000533523 KRTAP21-2Q3LI59 83 aa3.08□□□□□ -1.92
CHMP4A-207ENST00000533523 MUC19Q7Z5P9 8384 aa2.96□□□□□ -1.94
CHMP4A-207ENST00000533523 KRTAP4-4Q9BYR3 166 aa2.93□□□□□ -1.94
CHMP4A-207ENST00000533523 KRTAP21-1Q3LI58 79 aa2.55□□□□□ -2
CHMP4A-207ENST00000533523 MUC16Q8WXI7 14507 aa2.08□□□□□ -2.08
Retrieved 78 of 20,778 RNA–protein pairs in 4.6 ms