RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-231ENST00000531110 EPPK1P58107 5090 aaKnown RBP1.93□□□□□ -2.1
CD44-231ENST00000531110 TNXBP22105 4242 aa1.91□□□□□ -2.1
CD44-231ENST00000531110 KRTAP10-4P60372 401 aaPredicted RBP1.9□□□□□ -2.11
CD44-231ENST00000531110 KRTAP21-2Q3LI59 83 aa1.9□□□□□ -2.11
CD44-231ENST00000531110 PKHD1P08F94 4074 aa1.9□□□□□ -2.11
CD44-231ENST00000531110 HYDINQ4G0P3 5121 aa1.89□□□□□ -2.11
CD44-231ENST00000531110 STARD9Q9P2P6 4700 aa1.89□□□□□ -2.11
CD44-231ENST00000531110 DYNC1H1Q14204 4646 aaKnown RBP1.89□□□□□ -2.11
CD44-231ENST00000531110 PLECQ15149 4684 aaKnown RBP1.88□□□□□ -2.11
CD44-231ENST00000531110 SMR3BP02814 79 aaPredicted RBP1.85□□□□□ -2.11
CD44-231ENST00000531110 RYR2Q92736 4967 aa1.83□□□□□ -2.12
CD44-231ENST00000531110 UBR4Q5T4S7 5183 aa1.83□□□□□ -2.12
CD44-231ENST00000531110 HERC2O95714 4834 aa1.83□□□□□ -2.12
CD44-231ENST00000531110 LPAP08519 4548 aa1.83□□□□□ -2.12
CD44-231ENST00000531110 SPRR2GQ9BYE4 73 aa1.82□□□□□ -2.12
CD44-231ENST00000531110 LRP1BQ9NZR2 4599 aa1.82□□□□□ -2.12
CD44-231ENST00000531110 KRTAP19-5Q3LI72 72 aa1.76□□□□□ -2.13
CD44-231ENST00000531110 HERC1Q15751 4861 aa1.75□□□□□ -2.13
CD44-231ENST00000531110 ABCA13Q86UQ4 5058 aa1.75□□□□□ -2.13
CD44-231ENST00000531110 KIAA1109Q2LD37 5005 aa1.75□□□□□ -2.13
CD44-231ENST00000531110 FAT1Q14517 4588 aa1.73□□□□□ -2.13
CD44-231ENST00000531110 MUC17Q685J3 4493 aa1.7□□□□□ -2.14
CD44-231ENST00000531110 MT1AP04731 61 aa1.69□□□□□ -2.14
CD44-231ENST00000531110 KRTAP19-2Q3LHN2 52 aa1.69□□□□□ -2.14
CD44-231ENST00000531110 CRCT1Q9UGL9 99 aa1.69□□□□□ -2.14
CD44-231ENST00000531110 KRTAP19-8Q3LI54 63 aa1.67□□□□□ -2.14
CD44-231ENST00000531110 MT1EP04732 61 aa1.61□□□□□ -2.15
CD44-231ENST00000531110 RNF213Q63HN8 5207 aa1.6□□□□□ -2.15
CD44-231ENST00000531110 PRM1P04553 51 aa1.59□□□□□ -2.15
CD44-231ENST00000531110 MT1XP80297 61 aa1.57□□□□□ -2.16
CD44-231ENST00000531110 HMCN2Q8NDA2 5059 aa1.56□□□□□ -2.16
CD44-231ENST00000531110 MUC2Q02817 5179 aa1.55□□□□□ -2.16
CD44-231ENST00000531110 MT1LQ93083 61 aa1.55□□□□□ -2.16
CD44-231ENST00000531110 MT1HL1P0DM35 61 aa1.53□□□□□ -2.16
CD44-231ENST00000531110 FAT4Q6V0I7 4981 aa1.53□□□□□ -2.16
CD44-231ENST00000531110 KRTAP4-1Q9BYQ7 146 aa1.52□□□□□ -2.17
CD44-231ENST00000531110 SPRR2AP35326 72 aa1.5□□□□□ -2.17
CD44-231ENST00000531110 LRP2P98164 4655 aa1.5□□□□□ -2.17
CD44-231ENST00000531110 FSIP2Q5CZC0 6907 aa1.5□□□□□ -2.17
CD44-231ENST00000531110 SPRR2BP35325 72 aa1.49□□□□□ -2.17
CD44-231ENST00000531110 HMCN1Q96RW7 5635 aa1.48□□□□□ -2.17
CD44-231ENST00000531110 MT1BP07438 61 aa1.46□□□□□ -2.18
CD44-231ENST00000531110 SPRR2FQ96RM1 72 aa1.46□□□□□ -2.18
CD44-231ENST00000531110 FCGBPQ9Y6R7 5405 aaPredicted RBP1.45□□□□□ -2.18
CD44-231ENST00000531110 SPRR2DP22532 72 aa1.42□□□□□ -2.18
CD44-231ENST00000531110 MT1HP80294 61 aa1.42□□□□□ -2.18
CD44-231ENST00000531110 KRTAP19-7Q3SYF9 63 aa1.41□□□□□ -2.18
CD44-231ENST00000531110 KRTAP6-2Q3LI66 62 aa1.39□□□□□ -2.19
CD44-231ENST00000531110 SPRR2EP22531 72 aa1.38□□□□□ -2.19
CD44-231ENST00000531110 SYNE1Q8NF91 8797 aaKnown RBP1.36□□□□□ -2.19
CD44-231ENST00000531110 MT2AP02795 61 aa1.34□□□□□ -2.19
CD44-231ENST00000531110 SSPOA2VEC9 5147 aa1.32□□□□□ -2.2
CD44-231ENST00000531110 MT1FP04733 61 aa1.31□□□□□ -2.2
CD44-231ENST00000531110 SYNE2Q8WXH0 6885 aaKnown RBP1.3□□□□□ -2.2
CD44-231ENST00000531110 MT1GP13640 62 aa1.29□□□□□ -2.2
CD44-231ENST00000531110 USH2AO75445 5202 aa1.26□□□□□ -2.21
CD44-231ENST00000531110 MT1MQ8N339 61 aa1.26□□□□□ -2.21
CD44-231ENST00000531110 NEBP20929 6669 aa1.25□□□□□ -2.21
CD44-231ENST00000531110 KRTAP19-3Q7Z4W3 81 aa1.25□□□□□ -2.21
CD44-231ENST00000531110 MACF1Q9UPN3 7388 aaKnown RBP1.24□□□□□ -2.21
CD44-231ENST00000531110 KRTAP21-1Q3LI58 79 aa1.22□□□□□ -2.21
CD44-231ENST00000531110 KRTAP20-1Q3LI63 56 aa1.22□□□□□ -2.21
CD44-231ENST00000531110 KMT2DO14686 5537 aa1.18□□□□□ -2.22
CD44-231ENST00000531110 GPR98Q8WXG9 6306 aa1.18□□□□□ -2.22
CD44-231ENST00000531110 MUC12Q9UKN1 5478 aa1.16□□□□□ -2.22
CD44-231ENST00000531110 KRTAP6-1Q3LI64 71 aa1.13□□□□□ -2.23
CD44-231ENST00000531110 MDN1Q9NU22 5596 aa1.11□□□□□ -2.23
CD44-231ENST00000531110 KRTAP19-6Q3LI70 58 aa1.06□□□□□ -2.24
CD44-231ENST00000531110 KRTAP5-10Q6L8G5 202 aa1.05□□□□□ -2.24
CD44-231ENST00000531110 DSTQ03001 7570 aaKnown RBP1.01□□□□□ -2.25
CD44-231ENST00000531110 AHNAK2Q8IVF2 5795 aa1.01□□□□□ -2.25
CD44-231ENST00000531110 MUC16Q8WXI7 14507 aa1□□□□□ -2.25
CD44-231ENST00000531110 AHNAKQ09666 5890 aaKnown RBP0.92□□□□□ -2.26
CD44-231ENST00000531110 MUC5BQ9HC84 5762 aaPredicted RBP0.9□□□□□ -2.26
CD44-231ENST00000531110 MT4P47944 62 aa0.88□□□□□ -2.27
CD44-231ENST00000531110 MUC5ACP98088 5654 aa0.87□□□□□ -2.27
CD44-231ENST00000531110 KRTAP20-2Q3LI61 65 aa0.74□□□□□ -2.29
CD44-231ENST00000531110 PHGR1C9JFL3 82 aa0.58□□□□□ -2.32
Retrieved 78 of 20,778 RNA–protein pairs in 189.7 ms