RNA–Protein interactions for RNA: ENST00000515459.5

LMNA-223, Transcript of lamin A/C, human

TSL 5

Gene LMNA, Length 757 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LMNA-223	ENST00000515459		A0A1B0GU69	56 aa		5.42	□□□□□ -1.54
LMNA-223	ENST00000515459	PCP4	P48539	62 aa		5.42	□□□□□ -1.54
LMNA-223	ENST00000515459	PRR15L	Q9BU68	103 aa		5.39	□□□□□ -1.55
LMNA-223	ENST00000515459		A0A1B0GU33	70 aa		5.38	□□□□□ -1.55
LMNA-223	ENST00000515459	SPATA8	Q6RVD6	105 aa		5.38	□□□□□ -1.55
LMNA-223	ENST00000515459	C10orf95	Q9H7T3	257 aa		5.37	□□□□□ -1.55
LMNA-223	ENST00000515459	KRTAP12-1	P59990	96 aa		5.35	□□□□□ -1.55
LMNA-223	ENST00000515459	LINC01558	Q9Y6Z2	57 aa		5.34	□□□□□ -1.55
LMNA-223	ENST00000515459	KRTAP20-2	Q3LI61	65 aa		5.33	□□□□□ -1.56
LMNA-223	ENST00000515459	LCE3A	Q5TA76	89 aa		5.33	□□□□□ -1.56
LMNA-223	ENST00000515459	SPRR5	A0A1B0GTR4	108 aa		5.3	□□□□□ -1.56
LMNA-223	ENST00000515459		V9GYY9	64 aa		5.29	□□□□□ -1.56
LMNA-223	ENST00000515459	SMIM26	A0A096LP01	95 aa		5.27	□□□□□ -1.57
LMNA-223	ENST00000515459	KRTAP4-7	Q9BYR0	210 aa		5.26	□□□□□ -1.57
LMNA-223	ENST00000515459	TNP1	P09430	55 aa		5.24	□□□□□ -1.57
LMNA-223	ENST00000515459	RPS28	P62857	69 aa	Known RBP	5.24	□□□□□ -1.57
LMNA-223	ENST00000515459		Q1T7F1	81 aa		5.2	□□□□□ -1.58
LMNA-223	ENST00000515459	KRTAP5-5	Q701N2	237 aa	Predicted RBP	5.2	□□□□□ -1.58
LMNA-223	ENST00000515459	UQCR11	O14957	56 aa		5.19	□□□□□ -1.58
LMNA-223	ENST00000515459	KRTAP12-4	P60329	112 aa		5.19	□□□□□ -1.58
LMNA-223	ENST00000515459	KRTAP12-3	P60328	96 aa		5.13	□□□□□ -1.59
LMNA-223	ENST00000515459	PSPHP1	O15172	72 aa		5.11	□□□□□ -1.59
LMNA-223	ENST00000515459		A8MU10	97 aa		5.09	□□□□□ -1.59
LMNA-223	ENST00000515459	MIR22HG	Q0VDD5	57 aa		5.08	□□□□□ -1.6
LMNA-223	ENST00000515459	SYNE1	Q8NF91	8797 aa	Known RBP	5.08	□□□□□ -1.6
LMNA-223	ENST00000515459	LOC100996750	A0A140TA64	210 aa		5.01	□□□□□ -1.61
LMNA-223	ENST00000515459		K7ERS5	55 aa		5.01	□□□□□ -1.61
LMNA-223	ENST00000515459		A6NED7	52 aa		5	□□□□□ -1.61
LMNA-223	ENST00000515459	KRTAP4-11	Q9BYQ6	195 aa		4.97	□□□□□ -1.61
LMNA-223	ENST00000515459	KRTAP5-2	Q701N4	177 aa		4.84	□□□□□ -1.63
LMNA-223	ENST00000515459	CDC42SE1	Q9NRR8	79 aa		4.84	□□□□□ -1.63
LMNA-223	ENST00000515459	KRTAP19-4	Q3LI73	84 aa		4.83	□□□□□ -1.64
LMNA-223	ENST00000515459	KRTAP5-8	O75690	187 aa		4.81	□□□□□ -1.64
LMNA-223	ENST00000515459	MUC5AC	P98088	5654 aa		4.79	□□□□□ -1.64
LMNA-223	ENST00000515459	AHNAK	Q09666	5890 aa	Known RBP	4.75	□□□□□ -1.65
LMNA-223	ENST00000515459	KRTAP25-1	Q3LHN0	102 aa		4.74	□□□□□ -1.65
LMNA-223	ENST00000515459	MT1A	P04731	61 aa		4.72	□□□□□ -1.65
LMNA-223	ENST00000515459	KRTAP6-1	Q3LI64	71 aa		4.72	□□□□□ -1.65
LMNA-223	ENST00000515459	MUC5B	Q9HC84	5762 aa	Predicted RBP	4.69	□□□□□ -1.66
LMNA-223	ENST00000515459	LCE3C	Q5T5A8	94 aa		4.68	□□□□□ -1.66
LMNA-223	ENST00000515459	OBSCN	Q5VST9	7968 aa		4.65	□□□□□ -1.66
LMNA-223	ENST00000515459	ROMO1	P60602	79 aa		4.65	□□□□□ -1.67
LMNA-223	ENST00000515459	KRTAP15-1	Q3LI76	137 aa		4.65	□□□□□ -1.67
LMNA-223	ENST00000515459	KRTAP9-9	Q9BYP9	154 aa		4.65	□□□□□ -1.67
LMNA-223	ENST00000515459	BRK1	Q8WUW1	75 aa		4.62	□□□□□ -1.67
LMNA-223	ENST00000515459	KRTAP9-4	Q9BYQ2	154 aa		4.61	□□□□□ -1.67
LMNA-223	ENST00000515459	KRTAP23-1	A1A580	65 aa		4.6	□□□□□ -1.67
LMNA-223	ENST00000515459	KRTAP6-2	Q3LI66	62 aa		4.59	□□□□□ -1.67
LMNA-223	ENST00000515459	KRTAP9-6	A8MVA2	160 aa		4.42	□□□□□ -1.7
LMNA-223	ENST00000515459	KRTAP5-1	Q6L8H4	278 aa		4.42	□□□□□ -1.7
LMNA-223	ENST00000515459	PMAIP1	Q13794	54 aa		4.39	□□□□□ -1.71
LMNA-223	ENST00000515459	MT3	P25713	68 aa		4.34	□□□□□ -1.71
LMNA-223	ENST00000515459	PRO0628	Q9UI54	55 aa		4.31	□□□□□ -1.72
LMNA-223	ENST00000515459	LCE1E	Q5T753	118 aa		4.09	□□□□□ -1.75
LMNA-223	ENST00000515459	PRAC1	Q96KF2	57 aa		4.06	□□□□□ -1.76
LMNA-223	ENST00000515459	KTN1-AS1	Q86SY8	53 aa		4.05	□□□□□ -1.76
LMNA-223	ENST00000515459	LCE1B	Q5T7P3	118 aa		3.89	□□□□□ -1.79
LMNA-223	ENST00000515459	KRTAP4-2	Q9BYR5	136 aa		3.89	□□□□□ -1.79
LMNA-223	ENST00000515459	SVIP	Q8NHG7	77 aa		3.85	□□□□□ -1.79
LMNA-223	ENST00000515459	LCE1C	Q5T751	118 aa		3.8	□□□□□ -1.8
LMNA-223	ENST00000515459	KRTAP4-12	Q9BQ66	201 aa		3.68	□□□□□ -1.82
LMNA-223	ENST00000515459	LUZP6	Q538Z0	58 aa		3.53	□□□□□ -1.84
LMNA-223	ENST00000515459	KRTAP5-11	Q6L8G4	156 aa		3.5	□□□□□ -1.85
LMNA-223	ENST00000515459	LCE1F	Q5T754	118 aa		3.49	□□□□□ -1.85
LMNA-223	ENST00000515459	KRTAP5-6	Q6L8G9	129 aa	Predicted RBP	3.4	□□□□□ -1.87
LMNA-223	ENST00000515459	PHGR1	C9JFL3	82 aa		3.35	□□□□□ -1.87
LMNA-223	ENST00000515459	LCE3D	Q9BYE3	92 aa		3.29	□□□□□ -1.88
LMNA-223	ENST00000515459	KRTAP21-2	Q3LI59	83 aa		3.12	□□□□□ -1.91
LMNA-223	ENST00000515459	NDUFAF8	A1L188	74 aa		3.04	□□□□□ -1.92
LMNA-223	ENST00000515459	LCE3E	Q5T5B0	92 aa		3.03	□□□□□ -1.92
LMNA-223	ENST00000515459	KRTAP4-4	Q9BYR3	166 aa		2.92	□□□□□ -1.94
LMNA-223	ENST00000515459	MUC19	Q7Z5P9	8384 aa		2.91	□□□□□ -1.94
LMNA-223	ENST00000515459		A0A0A0MQY5	61 aa		2.66	□□□□□ -1.98
LMNA-223	ENST00000515459	INE1	O15225	51 aa		2.57	□□□□□ -2
LMNA-223	ENST00000515459	KRTAP21-1	Q3LI58	79 aa		2.54	□□□□□ -2
LMNA-223	ENST00000515459	PRM1	P04553	51 aa		2.36	□□□□□ -2.03
LMNA-223	ENST00000515459		H3BS24	57 aa		2.32	□□□□□ -2.04
LMNA-223	ENST00000515459	MUC16	Q8WXI7	14507 aa		2.08	□□□□□ -2.08

Retrieved 78 of 20,778 RNA–protein pairs in 94.7 ms