RNA–Protein interactions for RNA: ENST00000493456.5

NUP50-218, Transcript of nucleoporin 50, humanhuman

TSL 3

Gene NUP50, Length 478 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP50-218ENST00000493456 A0A1B0GU33 70 aa5.84□□□□□ -1.47
NUP50-218ENST00000493456 TNP1P09430 55 aa5.83□□□□□ -1.48
NUP50-218ENST00000493456 SYNE1Q8NF91 8797 aaKnown RBP5.8□□□□□ -1.48
NUP50-218ENST00000493456 COA5Q86WW8 74 aa5.78□□□□□ -1.48
NUP50-218ENST00000493456 KRTAP12-3P60328 96 aa5.73□□□□□ -1.49
NUP50-218ENST00000493456 SMIM26A0A096LP01 95 aa5.7□□□□□ -1.5
NUP50-218ENST00000493456 A0A1B0GV90 55 aa5.7□□□□□ -1.5
NUP50-218ENST00000493456 KRTAP4-11Q9BYQ6 195 aa5.62□□□□□ -1.51
NUP50-218ENST00000493456 A8MU10 97 aa5.61□□□□□ -1.51
NUP50-218ENST00000493456 AHNAKQ09666 5890 aaKnown RBP5.58□□□□□ -1.52
NUP50-218ENST00000493456 SERP2Q8N6R1 65 aa5.57□□□□□ -1.52
NUP50-218ENST00000493456 MUC5BQ9HC84 5762 aaPredicted RBP5.55□□□□□ -1.52
NUP50-218ENST00000493456 MUC5ACP98088 5654 aa5.54□□□□□ -1.52
NUP50-218ENST00000493456 A0A1B0GU69 56 aa5.51□□□□□ -1.53
NUP50-218ENST00000493456 KRTAP5-2Q701N4 177 aa5.47□□□□□ -1.53
NUP50-218ENST00000493456 K7ERU9 68 aa5.43□□□□□ -1.54
NUP50-218ENST00000493456 KRTAP5-8O75690 187 aa5.43□□□□□ -1.54
NUP50-218ENST00000493456 KRTAP19-4Q3LI73 84 aa5.43□□□□□ -1.54
NUP50-218ENST00000493456 KRTAP4-12Q9BQ66 201 aa5.43□□□□□ -1.54
NUP50-218ENST00000493456 KRTAP9-9Q9BYP9 154 aa5.36□□□□□ -1.55
NUP50-218ENST00000493456 KRTAP9-4Q9BYQ2 154 aa5.36□□□□□ -1.55
NUP50-218ENST00000493456 OBSCNQ5VST9 7968 aa5.32□□□□□ -1.56
NUP50-218ENST00000493456 MT1AP04731 61 aa5.3□□□□□ -1.56
NUP50-218ENST00000493456 H7BZZ5 65 aa5.28□□□□□ -1.56
NUP50-218ENST00000493456 KRTAP6-1Q3LI64 71 aa5.28□□□□□ -1.56
NUP50-218ENST00000493456 KRTAP25-1Q3LHN0 102 aa5.25□□□□□ -1.57
NUP50-218ENST00000493456 COX7CP15954 63 aa5.23□□□□□ -1.57
NUP50-218ENST00000493456 PRR15LQ9BU68 103 aa5.22□□□□□ -1.57
NUP50-218ENST00000493456 LCE3CQ5T5A8 94 aa5.21□□□□□ -1.58
NUP50-218ENST00000493456 KRTAP15-1Q3LI76 137 aa5.18□□□□□ -1.58
NUP50-218ENST00000493456 KRTAP6-2Q3LI66 62 aa5.15□□□□□ -1.59
NUP50-218ENST00000493456 KRTAP23-1A1A580 65 aa5.04□□□□□ -1.6
NUP50-218ENST00000493456 UQCR11O14957 56 aa5.02□□□□□ -1.61
NUP50-218ENST00000493456 LINC01558Q9Y6Z2 57 aa5.01□□□□□ -1.61
NUP50-218ENST00000493456 KRTAP5-1Q6L8H4 278 aa4.99□□□□□ -1.61
NUP50-218ENST00000493456 KRTAP4-2Q9BYR5 136 aa4.95□□□□□ -1.62
NUP50-218ENST00000493456 KRTAP9-6A8MVA2 160 aa4.91□□□□□ -1.62
NUP50-218ENST00000493456 K7ERS5 55 aa4.89□□□□□ -1.63
NUP50-218ENST00000493456 MT3P25713 68 aa4.88□□□□□ -1.63
NUP50-218ENST00000493456 ATP5EP56381 51 aaPredicted RBP4.85□□□□□ -1.63
NUP50-218ENST00000493456 MIR22HGQ0VDD5 57 aa4.84□□□□□ -1.63
NUP50-218ENST00000493456 ANAPC13Q9BS18 74 aa4.74□□□□□ -1.65
NUP50-218ENST00000493456 CCDC179H3BU77 68 aa4.65□□□□□ -1.67
NUP50-218ENST00000493456 RPS28P62857 69 aaKnown RBP4.65□□□□□ -1.67
NUP50-218ENST00000493456 LCE1EQ5T753 118 aa4.62□□□□□ -1.67
NUP50-218ENST00000493456 CDC42SE1Q9NRR8 79 aa4.54□□□□□ -1.68
NUP50-218ENST00000493456 TMEM258P61165 79 aa4.49□□□□□ -1.69
NUP50-218ENST00000493456 Q1T7F1 81 aa4.48□□□□□ -1.69
NUP50-218ENST00000493456 PSPHP1O15172 72 aa4.42□□□□□ -1.7
NUP50-218ENST00000493456 ROMO1P60602 79 aa4.42□□□□□ -1.7
NUP50-218ENST00000493456 V9GYY9 64 aa4.39□□□□□ -1.71
NUP50-218ENST00000493456 LCE1BQ5T7P3 118 aa4.35□□□□□ -1.71
NUP50-218ENST00000493456 LCE1CQ5T751 118 aa4.29□□□□□ -1.72
NUP50-218ENST00000493456 A6NED7 52 aa4.26□□□□□ -1.73
NUP50-218ENST00000493456 H3BS24 57 aa4.11□□□□□ -1.75
NUP50-218ENST00000493456 KRTAP5-11Q6L8G4 156 aa3.98□□□□□ -1.77
NUP50-218ENST00000493456 LCE1FQ5T754 118 aa3.95□□□□□ -1.78
NUP50-218ENST00000493456 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.85□□□□□ -1.79
NUP50-218ENST00000493456 PHGR1C9JFL3 82 aa3.84□□□□□ -1.79
NUP50-218ENST00000493456 LCE3DQ9BYE3 92 aa3.66□□□□□ -1.82
NUP50-218ENST00000493456 SVIPQ8NHG7 77 aa3.64□□□□□ -1.83
NUP50-218ENST00000493456 KRTAP21-2Q3LI59 83 aa3.49□□□□□ -1.85
NUP50-218ENST00000493456 LCE3EQ5T5B0 92 aa3.35□□□□□ -1.87
NUP50-218ENST00000493456 MUC19Q7Z5P9 8384 aa3.3□□□□□ -1.88
NUP50-218ENST00000493456 KRTAP4-4Q9BYR3 166 aa3.24□□□□□ -1.89
NUP50-218ENST00000493456 BRK1Q8WUW1 75 aa3.02□□□□□ -1.93
NUP50-218ENST00000493456 KRTAP21-1Q3LI58 79 aa2.91□□□□□ -1.94
NUP50-218ENST00000493456 PCP4P48539 62 aa2.84□□□□□ -1.95
NUP50-218ENST00000493456 PRAC1Q96KF2 57 aa2.81□□□□□ -1.96
NUP50-218ENST00000493456 A0A0A0MQY5 61 aa2.8□□□□□ -1.96
NUP50-218ENST00000493456 PMAIP1Q13794 54 aa2.78□□□□□ -1.96
NUP50-218ENST00000493456 LUZP6Q538Z0 58 aa2.54□□□□□ -2
NUP50-218ENST00000493456 MUC16Q8WXI7 14507 aa2.38□□□□□ -2.03
NUP50-218ENST00000493456 PRM1P04553 51 aa2.22□□□□□ -2.05
NUP50-218ENST00000493456 KTN1-AS1Q86SY8 53 aa2.11□□□□□ -2.07
NUP50-218ENST00000493456 NDUFAF8A1L188 74 aa2.04□□□□□ -2.08
NUP50-218ENST00000493456 PRO0628Q9UI54 55 aa2□□□□□ -2.09
NUP50-218ENST00000493456 INE1O15225 51 aa1.13□□□□□ -2.23
Retrieved 78 of 20,778 RNA–protein pairs in 67.2 ms