RNA–Protein interactions for RNA: ENST00000490751.1

LDB1-204, Transcript of LIM domain binding 1, humanhuman

TSL 2

Gene LDB1, Length 762 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB1-204ENST00000490751 KRTAP4-3Q9BYR4 195 aa10.89□□□□□ -0.67
LDB1-204ENST00000490751 LCE1DQ5T752 114 aa10.88□□□□□ -0.67
LDB1-204ENST00000490751 LCE4AQ5TA78 99 aa10.86□□□□□ -0.67
LDB1-204ENST00000490751 GPR98Q8WXG9 6306 aa10.85□□□□□ -0.67
LDB1-204ENST00000490751 MT4P47944 62 aa10.76□□□□□ -0.69
LDB1-204ENST00000490751 KRTAP12-3P60328 96 aa10.76□□□□□ -0.69
LDB1-204ENST00000490751 MIR22HGQ0VDD5 57 aa10.67□□□□□ -0.7
LDB1-204ENST00000490751 HMCN1Q96RW7 5635 aa10.66□□□□□ -0.7
LDB1-204ENST00000490751 KRTAP5-4Q6L8H1 288 aa10.64□□□□□ -0.71
LDB1-204ENST00000490751 KRTAP4-7Q9BYR0 210 aa10.63□□□□□ -0.71
LDB1-204ENST00000490751 KRTAP25-1Q3LHN0 102 aa10.55□□□□□ -0.72
LDB1-204ENST00000490751 K7ERS5 55 aa10.48□□□□□ -0.73
LDB1-204ENST00000490751 KRTAP4-6Q9BYQ5 205 aa10.45□□□□□ -0.74
LDB1-204ENST00000490751 PSPHP1O15172 72 aa10.43□□□□□ -0.74
LDB1-204ENST00000490751 V9GYY9 64 aa10.42□□□□□ -0.74
LDB1-204ENST00000490751 Q1T7F1 81 aa10.34□□□□□ -0.75
LDB1-204ENST00000490751 AHNAK2Q8IVF2 5795 aa10.33□□□□□ -0.76
LDB1-204ENST00000490751 KRTAP5-5Q701N2 237 aaPredicted RBP10.22□□□□□ -0.77
LDB1-204ENST00000490751 KRTAP5-10Q6L8G5 202 aa10.13□□□□□ -0.79
LDB1-204ENST00000490751 KRTAP23-1A1A580 65 aa10.12□□□□□ -0.79
LDB1-204ENST00000490751 KRTAP19-4Q3LI73 84 aa10.1□□□□□ -0.79
LDB1-204ENST00000490751 LOC100996750A0A140TA64 210 aa10.07□□□□□ -0.8
LDB1-204ENST00000490751 A6NED7 52 aa10.07□□□□□ -0.8
LDB1-204ENST00000490751 KRTAP20-2Q3LI61 65 aa10.06□□□□□ -0.8
LDB1-204ENST00000490751 KRTAP15-1Q3LI76 137 aa10.03□□□□□ -0.8
LDB1-204ENST00000490751 SPRR5A0A1B0GTR4 108 aa9.99□□□□□ -0.81
LDB1-204ENST00000490751 PCP4P48539 62 aa9.96□□□□□ -0.82
LDB1-204ENST00000490751 KRTAP12-4P60329 112 aa9.96□□□□□ -0.82
LDB1-204ENST00000490751 CDC42SE1Q9NRR8 79 aa9.92□□□□□ -0.82
LDB1-204ENST00000490751 KRTAP5-3Q6L8H2 238 aa9.9□□□□□ -0.82
LDB1-204ENST00000490751 LCE3CQ5T5A8 94 aa9.89□□□□□ -0.83
LDB1-204ENST00000490751 SYNE1Q8NF91 8797 aaKnown RBP9.86□□□□□ -0.83
LDB1-204ENST00000490751 ROMO1P60602 79 aa9.75□□□□□ -0.85
LDB1-204ENST00000490751 KRTAP5-7Q6L8G8 165 aa9.73□□□□□ -0.85
LDB1-204ENST00000490751 RPS28P62857 69 aaKnown RBP9.67□□□□□ -0.86
LDB1-204ENST00000490751 MT1AP04731 61 aa9.5□□□□□ -0.89
LDB1-204ENST00000490751 KRTAP6-1Q3LI64 71 aa9.45□□□□□ -0.9
LDB1-204ENST00000490751 KRTAP9-6A8MVA2 160 aa9.35□□□□□ -0.91
LDB1-204ENST00000490751 KRTAP5-2Q701N4 177 aa9.32□□□□□ -0.92
LDB1-204ENST00000490751 KRTAP4-11Q9BYQ6 195 aa9.19□□□□□ -0.94
LDB1-204ENST00000490751 KRTAP9-4Q9BYQ2 154 aa9.18□□□□□ -0.94
LDB1-204ENST00000490751 KRTAP6-2Q3LI66 62 aa9.04□□□□□ -0.96
LDB1-204ENST00000490751 KRTAP5-8O75690 187 aa8.89□□□□□ -0.99
LDB1-204ENST00000490751 OBSCNQ5VST9 7968 aa8.73□□□□□ -1.01
LDB1-204ENST00000490751 MT3P25713 68 aa8.68□□□□□ -1.02
LDB1-204ENST00000490751 BRK1Q8WUW1 75 aa8.5□□□□□ -1.05
LDB1-204ENST00000490751 MUC5ACP98088 5654 aa8.47□□□□□ -1.05
LDB1-204ENST00000490751 AHNAKQ09666 5890 aaKnown RBP8.47□□□□□ -1.05
LDB1-204ENST00000490751 MUC5BQ9HC84 5762 aaPredicted RBP8.46□□□□□ -1.06
LDB1-204ENST00000490751 KRTAP9-9Q9BYP9 154 aa8.43□□□□□ -1.06
LDB1-204ENST00000490751 KRTAP5-1Q6L8H4 278 aa8.36□□□□□ -1.07
LDB1-204ENST00000490751 PMAIP1Q13794 54 aa8.01□□□□□ -1.13
LDB1-204ENST00000490751 LCE1EQ5T753 118 aa7.97□□□□□ -1.13
LDB1-204ENST00000490751 PRO0628Q9UI54 55 aa7.89□□□□□ -1.15
LDB1-204ENST00000490751 PRAC1Q96KF2 57 aa7.76□□□□□ -1.17
LDB1-204ENST00000490751 KRTAP4-2Q9BYR5 136 aa7.57□□□□□ -1.2
LDB1-204ENST00000490751 LCE1BQ5T7P3 118 aa7.55□□□□□ -1.2
LDB1-204ENST00000490751 KTN1-AS1Q86SY8 53 aa7.41□□□□□ -1.22
LDB1-204ENST00000490751 LCE1CQ5T751 118 aa7.4□□□□□ -1.22
LDB1-204ENST00000490751 LCE3DQ9BYE3 92 aa7.12□□□□□ -1.27
LDB1-204ENST00000490751 SVIPQ8NHG7 77 aa6.95□□□□□ -1.3
LDB1-204ENST00000490751 KRTAP4-12Q9BQ66 201 aa6.89□□□□□ -1.31
LDB1-204ENST00000490751 KRTAP5-11Q6L8G4 156 aa6.73□□□□□ -1.33
LDB1-204ENST00000490751 KRTAP5-6Q6L8G9 129 aaPredicted RBP6.73□□□□□ -1.33
LDB1-204ENST00000490751 LCE3EQ5T5B0 92 aa6.69□□□□□ -1.34
LDB1-204ENST00000490751 LUZP6Q538Z0 58 aa6.55□□□□□ -1.36
LDB1-204ENST00000490751 LCE1FQ5T754 118 aa6.54□□□□□ -1.36
LDB1-204ENST00000490751 KRTAP21-2Q3LI59 83 aa6.22□□□□□ -1.41
LDB1-204ENST00000490751 PHGR1C9JFL3 82 aa5.91□□□□□ -1.46
LDB1-204ENST00000490751 KRTAP4-4Q9BYR3 166 aa5.73□□□□□ -1.49
LDB1-204ENST00000490751 NDUFAF8A1L188 74 aa5.53□□□□□ -1.52
LDB1-204ENST00000490751 MUC19Q7Z5P9 8384 aa5.4□□□□□ -1.54
LDB1-204ENST00000490751 PRM1P04553 51 aa5□□□□□ -1.61
LDB1-204ENST00000490751 A0A0A0MQY5 61 aa4.68□□□□□ -1.66
LDB1-204ENST00000490751 INE1O15225 51 aa4.62□□□□□ -1.67
LDB1-204ENST00000490751 KRTAP21-1Q3LI58 79 aa4.47□□□□□ -1.69
LDB1-204ENST00000490751 H3BS24 57 aa4.03□□□□□ -1.76
LDB1-204ENST00000490751 MUC16Q8WXI7 14507 aa3.82□□□□□ -1.8
Retrieved 78 of 20,778 RNA–protein pairs in 9.5 ms