RNA–Protein interactions for RNA: ENST00000490099.5

TMEM39A-210, Transcript of transmembrane protein 39A, humanhuman

TSL 3

Gene TMEM39A, Length 868 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-210ENST00000490099 KRTAP13-4Q3LI77 160 aa3.9□□□□□ -1.79
TMEM39A-210ENST00000490099 LINC01554Q52M75 96 aa3.9□□□□□ -1.79
TMEM39A-210ENST00000490099 SPATA8Q6RVD6 105 aa3.9□□□□□ -1.79
TMEM39A-210ENST00000490099 KRTAP10-7P60409 375 aaPredicted RBP3.89□□□□□ -1.79
TMEM39A-210ENST00000490099 MIR22HGQ0VDD5 57 aa3.89□□□□□ -1.79
TMEM39A-210ENST00000490099 KRTAP2-1Q9BYU5 128 aa3.86□□□□□ -1.79
TMEM39A-210ENST00000490099 A0A0D9SG42 100 aa3.85□□□□□ -1.79
TMEM39A-210ENST00000490099 MT3P25713 68 aa3.85□□□□□ -1.79
TMEM39A-210ENST00000490099 A8MU10 97 aa3.82□□□□□ -1.8
TMEM39A-210ENST00000490099 CDC42SE1Q9NRR8 79 aa3.82□□□□□ -1.8
TMEM39A-210ENST00000490099 K7ERS5 55 aa3.81□□□□□ -1.8
TMEM39A-210ENST00000490099 GPR98Q8WXG9 6306 aa3.81□□□□□ -1.8
TMEM39A-210ENST00000490099 SPRR2DP22532 72 aa3.8□□□□□ -1.8
TMEM39A-210ENST00000490099 SPINT4Q6UDR6 99 aa3.79□□□□□ -1.8
TMEM39A-210ENST00000490099 KRTAP12-1P59990 96 aa3.77□□□□□ -1.81
TMEM39A-210ENST00000490099 CAMK2N1Q7Z7J9 78 aa3.76□□□□□ -1.81
TMEM39A-210ENST00000490099 BRK1Q8WUW1 75 aa3.75□□□□□ -1.81
TMEM39A-210ENST00000490099 KRTAP19-7Q3SYF9 63 aa3.69□□□□□ -1.82
TMEM39A-210ENST00000490099 MT1EP04732 61 aa3.64□□□□□ -1.83
TMEM39A-210ENST00000490099 KRTAP19-3Q7Z4W3 81 aa3.61□□□□□ -1.83
TMEM39A-210ENST00000490099 PRO0628Q9UI54 55 aa3.61□□□□□ -1.83
TMEM39A-210ENST00000490099 ROMO1P60602 79 aa3.57□□□□□ -1.84
TMEM39A-210ENST00000490099 DSTQ03001 7570 aaKnown RBP3.56□□□□□ -1.84
TMEM39A-210ENST00000490099 LCE1EQ5T753 118 aa3.56□□□□□ -1.84
TMEM39A-210ENST00000490099 C10orf95Q9H7T3 257 aa3.56□□□□□ -1.84
TMEM39A-210ENST00000490099 TNP1P09430 55 aa3.55□□□□□ -1.84
TMEM39A-210ENST00000490099 PMAIP1Q13794 54 aa3.55□□□□□ -1.84
TMEM39A-210ENST00000490099 LCE1FQ5T754 118 aa3.55□□□□□ -1.84
TMEM39A-210ENST00000490099 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.55□□□□□ -1.84
TMEM39A-210ENST00000490099 MT1GP13640 62 aa3.54□□□□□ -1.84
TMEM39A-210ENST00000490099 KRTAP25-1Q3LHN0 102 aa3.53□□□□□ -1.84
TMEM39A-210ENST00000490099 KRTAP19-5Q3LI72 72 aa3.53□□□□□ -1.84
TMEM39A-210ENST00000490099 KRTAP5-11Q6L8G4 156 aa3.52□□□□□ -1.85
TMEM39A-210ENST00000490099 PRAC1Q96KF2 57 aa3.52□□□□□ -1.85
TMEM39A-210ENST00000490099 PP632Q6XCG6 107 aa3.46□□□□□ -1.86
TMEM39A-210ENST00000490099 MT1MQ8N339 61 aa3.46□□□□□ -1.86
TMEM39A-210ENST00000490099 MT1LQ93083 61 aa3.46□□□□□ -1.86
TMEM39A-210ENST00000490099 NDUFAF8A1L188 74 aa3.41□□□□□ -1.86
TMEM39A-210ENST00000490099 LCE3AQ5TA76 89 aa3.4□□□□□ -1.87
TMEM39A-210ENST00000490099 KRTAP5-4Q6L8H1 288 aa3.39□□□□□ -1.87
TMEM39A-210ENST00000490099 KTN1-AS1Q86SY8 53 aa3.37□□□□□ -1.87
TMEM39A-210ENST00000490099 KRTAP4-3Q9BYR4 195 aa3.37□□□□□ -1.87
TMEM39A-210ENST00000490099 MT4P47944 62 aa3.33□□□□□ -1.88
TMEM39A-210ENST00000490099 HMCN1Q96RW7 5635 aa3.33□□□□□ -1.88
TMEM39A-210ENST00000490099 AHNAK2Q8IVF2 5795 aa3.31□□□□□ -1.88
TMEM39A-210ENST00000490099 LCE3CQ5T5A8 94 aa3.3□□□□□ -1.88
TMEM39A-210ENST00000490099 KRTAP12-3P60328 96 aa3.29□□□□□ -1.88
TMEM39A-210ENST00000490099 KRTAP5-10Q6L8G5 202 aa3.28□□□□□ -1.88
TMEM39A-210ENST00000490099 KRTAP5-5Q701N2 237 aaPredicted RBP3.22□□□□□ -1.89
TMEM39A-210ENST00000490099 KRTAP9-6A8MVA2 160 aa3.21□□□□□ -1.9
TMEM39A-210ENST00000490099 KRTAP5-7Q6L8G8 165 aa3.21□□□□□ -1.9
TMEM39A-210ENST00000490099 SPRR5A0A1B0GTR4 108 aa3.16□□□□□ -1.9
TMEM39A-210ENST00000490099 KRTAP20-2Q3LI61 65 aa3.16□□□□□ -1.9
TMEM39A-210ENST00000490099 KRTAP12-4P60329 112 aa3.1□□□□□ -1.91
TMEM39A-210ENST00000490099 KRTAP5-1Q6L8H4 278 aa3.03□□□□□ -1.92
TMEM39A-210ENST00000490099 SYNE1Q8NF91 8797 aaKnown RBP3.03□□□□□ -1.92
TMEM39A-210ENST00000490099 LCE3EQ5T5B0 92 aa3.01□□□□□ -1.93
TMEM39A-210ENST00000490099 KRTAP5-2Q701N4 177 aa2.96□□□□□ -1.94
TMEM39A-210ENST00000490099 MT1AP04731 61 aa2.95□□□□□ -1.94
TMEM39A-210ENST00000490099 KRTAP6-1Q3LI64 71 aa2.92□□□□□ -1.94
TMEM39A-210ENST00000490099 KRTAP4-4Q9BYR3 166 aa2.92□□□□□ -1.94
TMEM39A-210ENST00000490099 AHNAKQ09666 5890 aaKnown RBP2.91□□□□□ -1.94
TMEM39A-210ENST00000490099 KRTAP5-8O75690 187 aa2.82□□□□□ -1.96
TMEM39A-210ENST00000490099 KRTAP6-2Q3LI66 62 aa2.8□□□□□ -1.96
TMEM39A-210ENST00000490099 LUZP6Q538Z0 58 aa2.8□□□□□ -1.96
TMEM39A-210ENST00000490099 MUC5ACP98088 5654 aa2.8□□□□□ -1.96
TMEM39A-210ENST00000490099 MUC5BQ9HC84 5762 aaPredicted RBP2.78□□□□□ -1.96
TMEM39A-210ENST00000490099 OBSCNQ5VST9 7968 aa2.7□□□□□ -1.98
TMEM39A-210ENST00000490099 LCE3DQ9BYE3 92 aa2.46□□□□□ -2.02
TMEM39A-210ENST00000490099 LCE1CQ5T751 118 aa2.35□□□□□ -2.03
TMEM39A-210ENST00000490099 LCE1BQ5T7P3 118 aa2.35□□□□□ -2.03
TMEM39A-210ENST00000490099 INE1O15225 51 aa2.24□□□□□ -2.05
TMEM39A-210ENST00000490099 PHGR1C9JFL3 82 aa1.96□□□□□ -2.1
TMEM39A-210ENST00000490099 KRTAP21-2Q3LI59 83 aa1.96□□□□□ -2.1
TMEM39A-210ENST00000490099 MUC19Q7Z5P9 8384 aa1.93□□□□□ -2.1
TMEM39A-210ENST00000490099 PRM1P04553 51 aa1.82□□□□□ -2.12
TMEM39A-210ENST00000490099 KRTAP21-1Q3LI58 79 aa1.51□□□□□ -2.17
TMEM39A-210ENST00000490099 MUC16Q8WXI7 14507 aa1.17□□□□□ -2.22
Retrieved 78 of 20,778 RNA–protein pairs in 39.9 ms