RNA–Protein interactions for RNA: ENST00000489072.5

HMGN1-217, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 1,014 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-217ENST00000489072 MT1MQ8N339 61 aa8.87□□□□□ -0.99
HMGN1-217ENST00000489072 KRTAP4-9Q9BYQ8 210 aa8.82□□□□□ -1
HMGN1-217ENST00000489072 UQCR11O14957 56 aa8.76□□□□□ -1.01
HMGN1-217ENST00000489072 H3BS24 57 aa8.71□□□□□ -1.02
HMGN1-217ENST00000489072 KRTAP4-3Q9BYR4 195 aa8.7□□□□□ -1.02
HMGN1-217ENST00000489072 KRTAP9-9Q9BYP9 154 aa8.69□□□□□ -1.02
HMGN1-217ENST00000489072 KRTAP9-4Q9BYQ2 154 aa8.69□□□□□ -1.02
HMGN1-217ENST00000489072 LCE1DQ5T752 114 aa8.62□□□□□ -1.03
HMGN1-217ENST00000489072 GPR98Q8WXG9 6306 aa8.61□□□□□ -1.03
HMGN1-217ENST00000489072 KRTAP12-3P60328 96 aa8.59□□□□□ -1.03
HMGN1-217ENST00000489072 LCE4AQ5TA78 99 aa8.58□□□□□ -1.04
HMGN1-217ENST00000489072 MIR22HGQ0VDD5 57 aa8.57□□□□□ -1.04
HMGN1-217ENST00000489072 HMCN1Q96RW7 5635 aa8.52□□□□□ -1.04
HMGN1-217ENST00000489072 MT4P47944 62 aa8.51□□□□□ -1.05
HMGN1-217ENST00000489072 KRTAP4-7Q9BYR0 210 aa8.51□□□□□ -1.05
HMGN1-217ENST00000489072 KRTAP5-4Q6L8H1 288 aa8.46□□□□□ -1.06
HMGN1-217ENST00000489072 KRTAP25-1Q3LHN0 102 aa8.44□□□□□ -1.06
HMGN1-217ENST00000489072 PSPHP1O15172 72 aa8.43□□□□□ -1.06
HMGN1-217ENST00000489072 V9GYY9 64 aa8.39□□□□□ -1.07
HMGN1-217ENST00000489072 Q1T7F1 81 aa8.37□□□□□ -1.07
HMGN1-217ENST00000489072 KRTAP19-4Q3LI73 84 aa8.37□□□□□ -1.07
HMGN1-217ENST00000489072 K7ERS5 55 aa8.36□□□□□ -1.07
HMGN1-217ENST00000489072 AHNAK2Q8IVF2 5795 aa8.22□□□□□ -1.09
HMGN1-217ENST00000489072 KRTAP5-5Q701N2 237 aaPredicted RBP8.15□□□□□ -1.1
HMGN1-217ENST00000489072 KRTAP23-1A1A580 65 aa8.11□□□□□ -1.11
HMGN1-217ENST00000489072 A6NED7 52 aa8.11□□□□□ -1.11
HMGN1-217ENST00000489072 KRTAP15-1Q3LI76 137 aa8.02□□□□□ -1.13
HMGN1-217ENST00000489072 KRTAP5-10Q6L8G5 202 aa8□□□□□ -1.13
HMGN1-217ENST00000489072 KRTAP20-2Q3LI61 65 aa7.98□□□□□ -1.13
HMGN1-217ENST00000489072 CDC42SE1Q9NRR8 79 aa7.95□□□□□ -1.14
HMGN1-217ENST00000489072 SPRR5A0A1B0GTR4 108 aa7.92□□□□□ -1.14
HMGN1-217ENST00000489072 LCE3CQ5T5A8 94 aa7.92□□□□□ -1.14
HMGN1-217ENST00000489072 KRTAP12-4P60329 112 aa7.88□□□□□ -1.15
HMGN1-217ENST00000489072 RPS28P62857 69 aaKnown RBP7.88□□□□□ -1.15
HMGN1-217ENST00000489072 ROMO1P60602 79 aa7.84□□□□□ -1.15
HMGN1-217ENST00000489072 KRTAP4-2Q9BYR5 136 aa7.84□□□□□ -1.15
HMGN1-217ENST00000489072 SYNE1Q8NF91 8797 aaKnown RBP7.82□□□□□ -1.16
HMGN1-217ENST00000489072 KRTAP5-3Q6L8H2 238 aa7.82□□□□□ -1.16
HMGN1-217ENST00000489072 KRTAP4-11Q9BYQ6 195 aa7.8□□□□□ -1.16
HMGN1-217ENST00000489072 PCP4P48539 62 aa7.73□□□□□ -1.17
HMGN1-217ENST00000489072 KRTAP5-7Q6L8G8 165 aa7.69□□□□□ -1.18
HMGN1-217ENST00000489072 MT1AP04731 61 aa7.57□□□□□ -1.2
HMGN1-217ENST00000489072 KRTAP6-1Q3LI64 71 aa7.55□□□□□ -1.2
HMGN1-217ENST00000489072 KRTAP9-6A8MVA2 160 aa7.53□□□□□ -1.2
HMGN1-217ENST00000489072 KRTAP5-2Q701N4 177 aa7.42□□□□□ -1.22
HMGN1-217ENST00000489072 SVIPQ8NHG7 77 aa7.42□□□□□ -1.22
HMGN1-217ENST00000489072 KRTAP6-2Q3LI66 62 aa7.2□□□□□ -1.26
HMGN1-217ENST00000489072 KRTAP5-8O75690 187 aa7.05□□□□□ -1.28
HMGN1-217ENST00000489072 BRK1Q8WUW1 75 aa6.91□□□□□ -1.3
HMGN1-217ENST00000489072 MT3P25713 68 aa6.9□□□□□ -1.3
HMGN1-217ENST00000489072 OBSCNQ5VST9 7968 aa6.9□□□□□ -1.31
HMGN1-217ENST00000489072 MUC5BQ9HC84 5762 aaPredicted RBP6.77□□□□□ -1.33
HMGN1-217ENST00000489072 AHNAKQ09666 5890 aaKnown RBP6.74□□□□□ -1.33
HMGN1-217ENST00000489072 MUC5ACP98088 5654 aa6.72□□□□□ -1.33
HMGN1-217ENST00000489072 KRTAP5-1Q6L8H4 278 aa6.65□□□□□ -1.34
HMGN1-217ENST00000489072 PMAIP1Q13794 54 aa6.47□□□□□ -1.37
HMGN1-217ENST00000489072 LCE1EQ5T753 118 aa6.34□□□□□ -1.39
HMGN1-217ENST00000489072 PRAC1Q96KF2 57 aa6.33□□□□□ -1.4
HMGN1-217ENST00000489072 A0A0A0MQY5 61 aa6.08□□□□□ -1.44
HMGN1-217ENST00000489072 LCE1BQ5T7P3 118 aa5.98□□□□□ -1.45
HMGN1-217ENST00000489072 PRO0628Q9UI54 55 aa5.9□□□□□ -1.46
HMGN1-217ENST00000489072 LCE1CQ5T751 118 aa5.89□□□□□ -1.47
HMGN1-217ENST00000489072 KTN1-AS1Q86SY8 53 aa5.68□□□□□ -1.5
HMGN1-217ENST00000489072 LCE3DQ9BYE3 92 aa5.68□□□□□ -1.5
HMGN1-217ENST00000489072 KRTAP5-6Q6L8G9 129 aaPredicted RBP5.37□□□□□ -1.55
HMGN1-217ENST00000489072 LCE3EQ5T5B0 92 aa5.35□□□□□ -1.55
HMGN1-217ENST00000489072 KRTAP5-11Q6L8G4 156 aa5.34□□□□□ -1.55
HMGN1-217ENST00000489072 LUZP6Q538Z0 58 aa5.25□□□□□ -1.57
HMGN1-217ENST00000489072 LCE1FQ5T754 118 aa5.16□□□□□ -1.58
HMGN1-217ENST00000489072 KRTAP21-2Q3LI59 83 aa4.98□□□□□ -1.61
HMGN1-217ENST00000489072 PHGR1C9JFL3 82 aa4.64□□□□□ -1.67
HMGN1-217ENST00000489072 NDUFAF8A1L188 74 aa4.62□□□□□ -1.67
HMGN1-217ENST00000489072 KRTAP4-4Q9BYR3 166 aa4.57□□□□□ -1.68
HMGN1-217ENST00000489072 MUC19Q7Z5P9 8384 aa4.25□□□□□ -1.73
HMGN1-217ENST00000489072 PRM1P04553 51 aa4.03□□□□□ -1.76
HMGN1-217ENST00000489072 KRTAP21-1Q3LI58 79 aa3.52□□□□□ -1.85
HMGN1-217ENST00000489072 INE1O15225 51 aa3.25□□□□□ -1.89
HMGN1-217ENST00000489072 MUC16Q8WXI7 14507 aa3.05□□□□□ -1.92
Retrieved 78 of 20,778 RNA–protein pairs in 12.3 ms