RNA–Protein interactions for RNA: ENST00000487880.2

USP48-209, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 524 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-209ENST00000487880 PCLOQ9Y6V0 5065 aa0.91□□□□□ -2.26
USP48-209ENST00000487880 DNHD1Q96M86 4753 aa0.91□□□□□ -2.26
USP48-209ENST00000487880 HSPG2P98160 4391 aa0.89□□□□□ -2.27
USP48-209ENST00000487880 FAT2Q9NYQ8 4349 aa0.89□□□□□ -2.27
USP48-209ENST00000487880 FAT3Q8TDW7 4589 aa0.89□□□□□ -2.27
USP48-209ENST00000487880 FLGP20930 4061 aaPredicted RBP0.89□□□□□ -2.27
USP48-209ENST00000487880 RYR3Q15413 4870 aa0.88□□□□□ -2.27
USP48-209ENST00000487880 FAT1Q14517 4588 aa0.88□□□□□ -2.27
USP48-209ENST00000487880 KRTAP8-1Q8IUC2 63 aa0.88□□□□□ -2.27
USP48-209ENST00000487880 SMR3BP02814 79 aaPredicted RBP0.85□□□□□ -2.27
USP48-209ENST00000487880 KMT2CQ8NEZ4 4911 aaKnown RBP0.84□□□□□ -2.27
USP48-209ENST00000487880 MUC2Q02817 5179 aa0.84□□□□□ -2.28
USP48-209ENST00000487880 BIRC6Q9NR09 4857 aa0.84□□□□□ -2.28
USP48-209ENST00000487880 SPRR2GQ9BYE4 73 aa0.83□□□□□ -2.28
USP48-209ENST00000487880 HYDINQ4G0P3 5121 aa0.83□□□□□ -2.28
USP48-209ENST00000487880 MT1HL1P0DM35 61 aa0.82□□□□□ -2.28
USP48-209ENST00000487880 KRTAP19-2Q3LHN2 52 aa0.82□□□□□ -2.28
USP48-209ENST00000487880 HERC1Q15751 4861 aa0.82□□□□□ -2.28
USP48-209ENST00000487880 KRTAP2-3P0C7H8 128 aa0.81□□□□□ -2.28
USP48-209ENST00000487880 KRTAP2-4Q9BYR9 128 aa0.81□□□□□ -2.28
USP48-209ENST00000487880 KRTAP2-1Q9BYU5 128 aa0.81□□□□□ -2.28
USP48-209ENST00000487880 KIAA1109Q2LD37 5005 aa0.8□□□□□ -2.28
USP48-209ENST00000487880 EPPK1P58107 5090 aaKnown RBP0.8□□□□□ -2.28
USP48-209ENST00000487880 KRTAP19-3Q7Z4W3 81 aa0.79□□□□□ -2.28
USP48-209ENST00000487880 MUC5BQ9HC84 5762 aaPredicted RBP0.79□□□□□ -2.28
USP48-209ENST00000487880 M0R2T5 61 aa0.78□□□□□ -2.28
USP48-209ENST00000487880 KRTAP19-8Q3LI54 63 aa0.78□□□□□ -2.28
USP48-209ENST00000487880 KRTAP20-1Q3LI63 56 aa0.78□□□□□ -2.28
USP48-209ENST00000487880 MUC17Q685J3 4493 aa0.78□□□□□ -2.28
USP48-209ENST00000487880 LPAP08519 4548 aa0.78□□□□□ -2.28
USP48-209ENST00000487880 LRP2P98164 4655 aa0.77□□□□□ -2.29
USP48-209ENST00000487880 RYR1P21817 5038 aa0.77□□□□□ -2.29
USP48-209ENST00000487880 RYR2Q92736 4967 aa0.76□□□□□ -2.29
USP48-209ENST00000487880 AHNAK2Q8IVF2 5795 aa0.76□□□□□ -2.29
USP48-209ENST00000487880 AHNAKQ09666 5890 aaKnown RBP0.74□□□□□ -2.29
USP48-209ENST00000487880 MT1XP80297 61 aa0.74□□□□□ -2.29
USP48-209ENST00000487880 KRTAP19-5Q3LI72 72 aa0.74□□□□□ -2.29
USP48-209ENST00000487880 HERC2O95714 4834 aa0.73□□□□□ -2.29
USP48-209ENST00000487880 MT1BP07438 61 aa0.72□□□□□ -2.29
USP48-209ENST00000487880 FSIP2Q5CZC0 6907 aa0.71□□□□□ -2.3
USP48-209ENST00000487880 MT1EP04732 61 aa0.7□□□□□ -2.3
USP48-209ENST00000487880 GPR98Q8WXG9 6306 aa0.7□□□□□ -2.3
USP48-209ENST00000487880 ABCA13Q86UQ4 5058 aa0.69□□□□□ -2.3
USP48-209ENST00000487880 MT2AP02795 61 aa0.69□□□□□ -2.3
USP48-209ENST00000487880 MT1AP04731 61 aa0.68□□□□□ -2.3
USP48-209ENST00000487880 MT1FP04733 61 aa0.68□□□□□ -2.3
USP48-209ENST00000487880 MT1LQ93083 61 aa0.68□□□□□ -2.3
USP48-209ENST00000487880 HMCN2Q8NDA2 5059 aa0.68□□□□□ -2.3
USP48-209ENST00000487880 MT1HP80294 61 aa0.67□□□□□ -2.3
USP48-209ENST00000487880 SSPOA2VEC9 5147 aa0.66□□□□□ -2.3
USP48-209ENST00000487880 KRTAP19-7Q3SYF9 63 aa0.66□□□□□ -2.3
USP48-209ENST00000487880 FAT4Q6V0I7 4981 aa0.65□□□□□ -2.31
USP48-209ENST00000487880 NEBP20929 6669 aa0.64□□□□□ -2.31
USP48-209ENST00000487880 PRM1P04553 51 aa0.63□□□□□ -2.31
USP48-209ENST00000487880 MACF1Q9UPN3 7388 aaKnown RBP0.63□□□□□ -2.31
USP48-209ENST00000487880 SYNE2Q8WXH0 6885 aaKnown RBP0.62□□□□□ -2.31
USP48-209ENST00000487880 MT1GP13640 62 aa0.61□□□□□ -2.31
USP48-209ENST00000487880 KRTAP21-1Q3LI58 79 aa0.61□□□□□ -2.31
USP48-209ENST00000487880 SPRR2AP35326 72 aa0.6□□□□□ -2.31
USP48-209ENST00000487880 SPRR2FQ96RM1 72 aa0.6□□□□□ -2.31
USP48-209ENST00000487880 RNF213Q63HN8 5207 aa0.6□□□□□ -2.31
USP48-209ENST00000487880 MT1MQ8N339 61 aa0.59□□□□□ -2.31
USP48-209ENST00000487880 SPRR2BP35325 72 aa0.58□□□□□ -2.32
USP48-209ENST00000487880 KRTAP6-2Q3LI66 62 aa0.57□□□□□ -2.32
USP48-209ENST00000487880 SPRR2EP22531 72 aa0.56□□□□□ -2.32
USP48-209ENST00000487880 SYNE1Q8NF91 8797 aaKnown RBP0.56□□□□□ -2.32
USP48-209ENST00000487880 SPRR2DP22532 72 aa0.55□□□□□ -2.32
USP48-209ENST00000487880 PHGR1C9JFL3 82 aa0.54□□□□□ -2.32
USP48-209ENST00000487880 KRTAP6-1Q3LI64 71 aa0.54□□□□□ -2.32
USP48-209ENST00000487880 MUC5ACP98088 5654 aa0.54□□□□□ -2.32
USP48-209ENST00000487880 KRTAP19-6Q3LI70 58 aa0.53□□□□□ -2.32
USP48-209ENST00000487880 KMT2DO14686 5537 aa0.52□□□□□ -2.33
USP48-209ENST00000487880 USH2AO75445 5202 aa0.51□□□□□ -2.33
USP48-209ENST00000487880 DSTQ03001 7570 aaKnown RBP0.5□□□□□ -2.33
USP48-209ENST00000487880 MUC12Q9UKN1 5478 aa0.46□□□□□ -2.34
USP48-209ENST00000487880 MDN1Q9NU22 5596 aa0.42□□□□□ -2.34
USP48-209ENST00000487880 MT4P47944 62 aa0.36□□□□□ -2.35
USP48-209ENST00000487880 KRTAP20-2Q3LI61 65 aa0.35□□□□□ -2.35
Retrieved 78 of 20,778 RNA–protein pairs in 188.3 ms