RNA–Protein interactions for RNA: ENST00000487617.5

HDAC4-209, Transcript of histone deacetylase 4, humanhuman

TSL 3

Gene HDAC4, Length 819 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-209ENST00000487617 MIR22HGQ0VDD5 57 aa7.16□□□□□ -1.26
HDAC4-209ENST00000487617 KRTAP4-9Q9BYQ8 210 aa7.16□□□□□ -1.26
HDAC4-209ENST00000487617 KRTAP4-3Q9BYR4 195 aa7.08□□□□□ -1.28
HDAC4-209ENST00000487617 KRTAP12-3P60328 96 aa7.07□□□□□ -1.28
HDAC4-209ENST00000487617 RPS28P62857 69 aaKnown RBP7.06□□□□□ -1.28
HDAC4-209ENST00000487617 V9GYY9 64 aa7.06□□□□□ -1.28
HDAC4-209ENST00000487617 PSPHP1O15172 72 aa7.05□□□□□ -1.28
HDAC4-209ENST00000487617 K7ERS5 55 aa7.04□□□□□ -1.28
HDAC4-209ENST00000487617 GPR98Q8WXG9 6306 aa7□□□□□ -1.29
HDAC4-209ENST00000487617 Q1T7F1 81 aa7□□□□□ -1.29
HDAC4-209ENST00000487617 KRTAP25-1Q3LHN0 102 aa7□□□□□ -1.29
HDAC4-209ENST00000487617 LCE1DQ5T752 114 aa7□□□□□ -1.29
HDAC4-209ENST00000487617 LCE4AQ5TA78 99 aa7□□□□□ -1.29
HDAC4-209ENST00000487617 MT4P47944 62 aa6.94□□□□□ -1.3
HDAC4-209ENST00000487617 KRTAP4-7Q9BYR0 210 aa6.93□□□□□ -1.3
HDAC4-209ENST00000487617 KRTAP5-4Q6L8H1 288 aa6.86□□□□□ -1.31
HDAC4-209ENST00000487617 A6NED7 52 aa6.81□□□□□ -1.32
HDAC4-209ENST00000487617 HMCN1Q96RW7 5635 aa6.77□□□□□ -1.33
HDAC4-209ENST00000487617 KRTAP4-6Q9BYQ5 205 aa6.73□□□□□ -1.33
HDAC4-209ENST00000487617 KRTAP23-1A1A580 65 aa6.72□□□□□ -1.33
HDAC4-209ENST00000487617 CDC42SE1Q9NRR8 79 aa6.66□□□□□ -1.34
HDAC4-209ENST00000487617 KRTAP19-4Q3LI73 84 aa6.65□□□□□ -1.34
HDAC4-209ENST00000487617 KRTAP15-1Q3LI76 137 aa6.62□□□□□ -1.35
HDAC4-209ENST00000487617 KRTAP5-5Q701N2 237 aaPredicted RBP6.62□□□□□ -1.35
HDAC4-209ENST00000487617 LOC100996750A0A140TA64 210 aa6.56□□□□□ -1.36
HDAC4-209ENST00000487617 ROMO1P60602 79 aa6.55□□□□□ -1.36
HDAC4-209ENST00000487617 AHNAK2Q8IVF2 5795 aa6.53□□□□□ -1.36
HDAC4-209ENST00000487617 LCE3CQ5T5A8 94 aa6.51□□□□□ -1.37
HDAC4-209ENST00000487617 KRTAP20-2Q3LI61 65 aa6.49□□□□□ -1.37
HDAC4-209ENST00000487617 KRTAP12-4P60329 112 aa6.47□□□□□ -1.37
HDAC4-209ENST00000487617 SPRR5A0A1B0GTR4 108 aa6.46□□□□□ -1.38
HDAC4-209ENST00000487617 KRTAP5-10Q6L8G5 202 aa6.46□□□□□ -1.38
HDAC4-209ENST00000487617 KRTAP5-3Q6L8H2 238 aa6.33□□□□□ -1.4
HDAC4-209ENST00000487617 BRK1Q8WUW1 75 aa6.24□□□□□ -1.41
HDAC4-209ENST00000487617 KRTAP5-7Q6L8G8 165 aa6.21□□□□□ -1.42
HDAC4-209ENST00000487617 SYNE1Q8NF91 8797 aaKnown RBP6.21□□□□□ -1.42
HDAC4-209ENST00000487617 MT1AP04731 61 aa6.19□□□□□ -1.42
HDAC4-209ENST00000487617 PRO0628Q9UI54 55 aa6.19□□□□□ -1.42
HDAC4-209ENST00000487617 KRTAP6-1Q3LI64 71 aa6.16□□□□□ -1.42
HDAC4-209ENST00000487617 KRTAP9-6A8MVA2 160 aa6.13□□□□□ -1.43
HDAC4-209ENST00000487617 KRTAP5-2Q701N4 177 aa6.02□□□□□ -1.45
HDAC4-209ENST00000487617 KRTAP9-4Q9BYQ2 154 aa5.98□□□□□ -1.45
HDAC4-209ENST00000487617 PMAIP1Q13794 54 aa5.93□□□□□ -1.46
HDAC4-209ENST00000487617 KRTAP4-11Q9BYQ6 195 aa5.92□□□□□ -1.46
HDAC4-209ENST00000487617 KRTAP6-2Q3LI66 62 aa5.88□□□□□ -1.47
HDAC4-209ENST00000487617 KTN1-AS1Q86SY8 53 aa5.74□□□□□ -1.49
HDAC4-209ENST00000487617 KRTAP5-8O75690 187 aa5.71□□□□□ -1.5
HDAC4-209ENST00000487617 MT3P25713 68 aa5.67□□□□□ -1.5
HDAC4-209ENST00000487617 SVIPQ8NHG7 77 aa5.66□□□□□ -1.5
HDAC4-209ENST00000487617 OBSCNQ5VST9 7968 aa5.5□□□□□ -1.53
HDAC4-209ENST00000487617 KRTAP9-9Q9BYP9 154 aa5.43□□□□□ -1.54
HDAC4-209ENST00000487617 PRAC1Q96KF2 57 aa5.42□□□□□ -1.54
HDAC4-209ENST00000487617 AHNAKQ09666 5890 aaKnown RBP5.41□□□□□ -1.54
HDAC4-209ENST00000487617 MUC5BQ9HC84 5762 aaPredicted RBP5.39□□□□□ -1.55
HDAC4-209ENST00000487617 KRTAP5-1Q6L8H4 278 aa5.39□□□□□ -1.55
HDAC4-209ENST00000487617 MUC5ACP98088 5654 aa5.37□□□□□ -1.55
HDAC4-209ENST00000487617 LCE1EQ5T753 118 aa5.18□□□□□ -1.58
HDAC4-209ENST00000487617 LCE1BQ5T7P3 118 aa4.91□□□□□ -1.62
HDAC4-209ENST00000487617 KRTAP4-2Q9BYR5 136 aa4.89□□□□□ -1.63
HDAC4-209ENST00000487617 LCE1CQ5T751 118 aa4.81□□□□□ -1.64
HDAC4-209ENST00000487617 LCE3DQ9BYE3 92 aa4.7□□□□□ -1.66
HDAC4-209ENST00000487617 LUZP6Q538Z0 58 aa4.61□□□□□ -1.67
HDAC4-209ENST00000487617 KRTAP4-12Q9BQ66 201 aa4.45□□□□□ -1.7
HDAC4-209ENST00000487617 LCE3EQ5T5B0 92 aa4.43□□□□□ -1.7
HDAC4-209ENST00000487617 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.37□□□□□ -1.71
HDAC4-209ENST00000487617 NDUFAF8A1L188 74 aa4.35□□□□□ -1.71
HDAC4-209ENST00000487617 KRTAP5-11Q6L8G4 156 aa4.35□□□□□ -1.71
HDAC4-209ENST00000487617 LCE1FQ5T754 118 aa4.22□□□□□ -1.73
HDAC4-209ENST00000487617 KRTAP21-2Q3LI59 83 aa4.04□□□□□ -1.76
HDAC4-209ENST00000487617 A0A0A0MQY5 61 aa3.97□□□□□ -1.77
HDAC4-209ENST00000487617 PHGR1C9JFL3 82 aa3.78□□□□□ -1.8
HDAC4-209ENST00000487617 H3BS24 57 aa3.78□□□□□ -1.8
HDAC4-209ENST00000487617 INE1O15225 51 aa3.78□□□□□ -1.8
HDAC4-209ENST00000487617 KRTAP4-4Q9BYR3 166 aa3.73□□□□□ -1.81
HDAC4-209ENST00000487617 MUC19Q7Z5P9 8384 aa3.37□□□□□ -1.87
HDAC4-209ENST00000487617 PRM1P04553 51 aa3.35□□□□□ -1.87
HDAC4-209ENST00000487617 KRTAP21-1Q3LI58 79 aa2.87□□□□□ -1.95
HDAC4-209ENST00000487617 MUC16Q8WXI7 14507 aa2.46□□□□□ -2.02
Retrieved 78 of 20,778 RNA–protein pairs in 67.6 ms