RNA–Protein interactions for RNA: ENST00000484305.1

HDAC1-209, Transcript of histone deacetylase 1, humanhuman

TSL 5

Gene HDAC1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-209ENST00000484305 ATP5EP56381 51 aaPredicted RBP4.79□□□□□ -1.64
HDAC1-209ENST00000484305 KRTAP19-3Q7Z4W3 81 aa4.75□□□□□ -1.65
HDAC1-209ENST00000484305 KRTAP19-5Q3LI72 72 aa4.74□□□□□ -1.65
HDAC1-209ENST00000484305 PRR15LQ9BU68 103 aa4.73□□□□□ -1.65
HDAC1-209ENST00000484305 LINC01558Q9Y6Z2 57 aa4.71□□□□□ -1.66
HDAC1-209ENST00000484305 C10orf95Q9H7T3 257 aa4.7□□□□□ -1.66
HDAC1-209ENST00000484305 TMEM258P61165 79 aa4.67□□□□□ -1.66
HDAC1-209ENST00000484305 DSTQ03001 7570 aaKnown RBP4.66□□□□□ -1.66
HDAC1-209ENST00000484305 TNP1P09430 55 aa4.65□□□□□ -1.67
HDAC1-209ENST00000484305 MT1GP13640 62 aa4.64□□□□□ -1.67
HDAC1-209ENST00000484305 LCE3AQ5TA76 89 aa4.64□□□□□ -1.67
HDAC1-209ENST00000484305 MT1LQ93083 61 aa4.6□□□□□ -1.67
HDAC1-209ENST00000484305 UQCR11O14957 56 aa4.59□□□□□ -1.67
HDAC1-209ENST00000484305 PP632Q6XCG6 107 aa4.58□□□□□ -1.68
HDAC1-209ENST00000484305 MT1MQ8N339 61 aa4.57□□□□□ -1.68
HDAC1-209ENST00000484305 KRTAP4-3Q9BYR4 195 aa4.5□□□□□ -1.69
HDAC1-209ENST00000484305 MIR22HGQ0VDD5 57 aa4.49□□□□□ -1.69
HDAC1-209ENST00000484305 KRTAP12-3P60328 96 aa4.45□□□□□ -1.7
HDAC1-209ENST00000484305 PSPHP1O15172 72 aa4.43□□□□□ -1.7
HDAC1-209ENST00000484305 Q1T7F1 81 aa4.41□□□□□ -1.7
HDAC1-209ENST00000484305 V9GYY9 64 aa4.41□□□□□ -1.7
HDAC1-209ENST00000484305 KRTAP25-1Q3LHN0 102 aa4.39□□□□□ -1.71
HDAC1-209ENST00000484305 K7ERS5 55 aa4.38□□□□□ -1.71
HDAC1-209ENST00000484305 MT4P47944 62 aa4.37□□□□□ -1.71
HDAC1-209ENST00000484305 KRTAP5-4Q6L8H1 288 aa4.34□□□□□ -1.71
HDAC1-209ENST00000484305 HMCN1Q96RW7 5635 aa4.3□□□□□ -1.72
HDAC1-209ENST00000484305 A6NED7 52 aa4.27□□□□□ -1.73
HDAC1-209ENST00000484305 GPR98Q8WXG9 6306 aa4.26□□□□□ -1.73
HDAC1-209ENST00000484305 PCP4P48539 62 aa4.19□□□□□ -1.74
HDAC1-209ENST00000484305 KRTAP5-5Q701N2 237 aaPredicted RBP4.19□□□□□ -1.74
HDAC1-209ENST00000484305 RPS28P62857 69 aaKnown RBP4.17□□□□□ -1.74
HDAC1-209ENST00000484305 CDC42SE1Q9NRR8 79 aa4.16□□□□□ -1.74
HDAC1-209ENST00000484305 AHNAK2Q8IVF2 5795 aa4.12□□□□□ -1.75
HDAC1-209ENST00000484305 ROMO1P60602 79 aa4.11□□□□□ -1.75
HDAC1-209ENST00000484305 LCE3CQ5T5A8 94 aa4.11□□□□□ -1.75
HDAC1-209ENST00000484305 KRTAP20-2Q3LI61 65 aa4.09□□□□□ -1.75
HDAC1-209ENST00000484305 KRTAP5-10Q6L8G5 202 aa4.09□□□□□ -1.75
HDAC1-209ENST00000484305 SPRR5A0A1B0GTR4 108 aa4.07□□□□□ -1.76
HDAC1-209ENST00000484305 KRTAP12-4P60329 112 aa4.05□□□□□ -1.76
HDAC1-209ENST00000484305 SYNE1Q8NF91 8797 aaKnown RBP3.96□□□□□ -1.78
HDAC1-209ENST00000484305 KRTAP5-7Q6L8G8 165 aa3.91□□□□□ -1.78
HDAC1-209ENST00000484305 KRTAP9-6A8MVA2 160 aa3.9□□□□□ -1.79
HDAC1-209ENST00000484305 MT1AP04731 61 aa3.9□□□□□ -1.79
HDAC1-209ENST00000484305 KRTAP6-1Q3LI64 71 aa3.89□□□□□ -1.79
HDAC1-209ENST00000484305 KRTAP5-11Q6L8G4 156 aa3.87□□□□□ -1.79
HDAC1-209ENST00000484305 KRTAP5-2Q701N4 177 aa3.81□□□□□ -1.8
HDAC1-209ENST00000484305 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.79□□□□□ -1.8
HDAC1-209ENST00000484305 KRTAP6-2Q3LI66 62 aa3.72□□□□□ -1.81
HDAC1-209ENST00000484305 LCE1EQ5T753 118 aa3.72□□□□□ -1.81
HDAC1-209ENST00000484305 MT3P25713 68 aa3.7□□□□□ -1.82
HDAC1-209ENST00000484305 BRK1Q8WUW1 75 aa3.67□□□□□ -1.82
HDAC1-209ENST00000484305 A0A0A0MQY5 61 aa3.65□□□□□ -1.83
HDAC1-209ENST00000484305 KRTAP5-8O75690 187 aa3.62□□□□□ -1.83
HDAC1-209ENST00000484305 SVIPQ8NHG7 77 aa3.6□□□□□ -1.83
HDAC1-209ENST00000484305 OBSCNQ5VST9 7968 aa3.54□□□□□ -1.84
HDAC1-209ENST00000484305 LCE1FQ5T754 118 aa3.47□□□□□ -1.85
HDAC1-209ENST00000484305 PMAIP1Q13794 54 aa3.44□□□□□ -1.86
HDAC1-209ENST00000484305 PRO0628Q9UI54 55 aa3.44□□□□□ -1.86
HDAC1-209ENST00000484305 KRTAP5-1Q6L8H4 278 aa3.41□□□□□ -1.86
HDAC1-209ENST00000484305 MUC5BQ9HC84 5762 aaPredicted RBP3.38□□□□□ -1.87
HDAC1-209ENST00000484305 MUC5ACP98088 5654 aa3.38□□□□□ -1.87
HDAC1-209ENST00000484305 AHNAKQ09666 5890 aaKnown RBP3.35□□□□□ -1.87
HDAC1-209ENST00000484305 PRAC1Q96KF2 57 aa3.34□□□□□ -1.87
HDAC1-209ENST00000484305 KRTAP4-4Q9BYR3 166 aa3.18□□□□□ -1.9
HDAC1-209ENST00000484305 KTN1-AS1Q86SY8 53 aa3.16□□□□□ -1.9
HDAC1-209ENST00000484305 LCE1BQ5T7P3 118 aa3.09□□□□□ -1.91
HDAC1-209ENST00000484305 LCE1CQ5T751 118 aa3.03□□□□□ -1.92
HDAC1-209ENST00000484305 NDUFAF8A1L188 74 aa3.02□□□□□ -1.93
HDAC1-209ENST00000484305 LCE3EQ5T5B0 92 aa2.99□□□□□ -1.93
HDAC1-209ENST00000484305 LCE3DQ9BYE3 92 aa2.96□□□□□ -1.94
HDAC1-209ENST00000484305 LUZP6Q538Z0 58 aa2.78□□□□□ -1.96
HDAC1-209ENST00000484305 KRTAP21-2Q3LI59 83 aa2.57□□□□□ -2
HDAC1-209ENST00000484305 PHGR1C9JFL3 82 aa2.37□□□□□ -2.03
HDAC1-209ENST00000484305 MUC19Q7Z5P9 8384 aa2.17□□□□□ -2.06
HDAC1-209ENST00000484305 INE1O15225 51 aa2.17□□□□□ -2.06
HDAC1-209ENST00000484305 PRM1P04553 51 aa2.11□□□□□ -2.07
HDAC1-209ENST00000484305 KRTAP21-1Q3LI58 79 aa1.78□□□□□ -2.12
HDAC1-209ENST00000484305 MUC16Q8WXI7 14507 aa1.54□□□□□ -2.16
Retrieved 78 of 20,778 RNA–protein pairs in 55.4 ms