RNA–Protein interactions for RNA: ENST00000481116.5

ABCF3-215, Transcript of ATP binding cassette subfamily F member 3, human

TSL 4

Gene ABCF3, Length 568 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ABCF3-215	ENST00000481116	MT1L	Q93083	61 aa		4.59	□□□□□ -1.67
ABCF3-215	ENST00000481116	PCP4	P48539	62 aa		4.56	□□□□□ -1.68
ABCF3-215	ENST00000481116	MT1M	Q8N339	61 aa		4.56	□□□□□ -1.68
ABCF3-215	ENST00000481116	PP632	Q6XCG6	107 aa		4.55	□□□□□ -1.68
ABCF3-215	ENST00000481116	RPS28	P62857	69 aa	Known RBP	4.53	□□□□□ -1.68
ABCF3-215	ENST00000481116	KRTAP4-9	Q9BYQ8	210 aa		4.53	□□□□□ -1.68
ABCF3-215	ENST00000481116		K7ERS5	55 aa		4.51	□□□□□ -1.69
ABCF3-215	ENST00000481116	KRTAP4-3	Q9BYR4	195 aa		4.51	□□□□□ -1.69
ABCF3-215	ENST00000481116		A6NED7	52 aa		4.45	□□□□□ -1.7
ABCF3-215	ENST00000481116	KRTAP12-3	P60328	96 aa		4.44	□□□□□ -1.7
ABCF3-215	ENST00000481116	KRTAP25-1	Q3LHN0	102 aa		4.44	□□□□□ -1.7
ABCF3-215	ENST00000481116	KRTAP4-7	Q9BYR0	210 aa		4.42	□□□□□ -1.7
ABCF3-215	ENST00000481116	LCE1D	Q5T752	114 aa		4.41	□□□□□ -1.7
ABCF3-215	ENST00000481116	MT4	P47944	62 aa		4.38	□□□□□ -1.71
ABCF3-215	ENST00000481116	LCE4A	Q5TA78	99 aa		4.37	□□□□□ -1.71
ABCF3-215	ENST00000481116	KRTAP5-4	Q6L8H1	288 aa		4.31	□□□□□ -1.72
ABCF3-215	ENST00000481116	KRTAP23-1	A1A580	65 aa		4.3	□□□□□ -1.72
ABCF3-215	ENST00000481116	CDC42SE1	Q9NRR8	79 aa		4.29	□□□□□ -1.72
ABCF3-215	ENST00000481116	HMCN1	Q96RW7	5635 aa		4.28	□□□□□ -1.72
ABCF3-215	ENST00000481116	KRTAP4-6	Q9BYQ5	205 aa		4.26	□□□□□ -1.73
ABCF3-215	ENST00000481116	GPR98	Q8WXG9	6306 aa		4.23	□□□□□ -1.73
ABCF3-215	ENST00000481116	ROMO1	P60602	79 aa		4.23	□□□□□ -1.73
ABCF3-215	ENST00000481116	LOC100996750	A0A140TA64	210 aa		4.19	□□□□□ -1.74
ABCF3-215	ENST00000481116	KRTAP19-4	Q3LI73	84 aa		4.19	□□□□□ -1.74
ABCF3-215	ENST00000481116	KRTAP5-5	Q701N2	237 aa	Predicted RBP	4.17	□□□□□ -1.74
ABCF3-215	ENST00000481116	KRTAP15-1	Q3LI76	137 aa		4.16	□□□□□ -1.74
ABCF3-215	ENST00000481116	AHNAK2	Q8IVF2	5795 aa		4.15	□□□□□ -1.75
ABCF3-215	ENST00000481116	LCE3C	Q5T5A8	94 aa		4.1	□□□□□ -1.75
ABCF3-215	ENST00000481116	KRTAP20-2	Q3LI61	65 aa		4.08	□□□□□ -1.76
ABCF3-215	ENST00000481116	KRTAP5-10	Q6L8G5	202 aa		4.06	□□□□□ -1.76
ABCF3-215	ENST00000481116	SPRR5	A0A1B0GTR4	108 aa		4.03	□□□□□ -1.76
ABCF3-215	ENST00000481116	KRTAP12-4	P60329	112 aa		4.03	□□□□□ -1.76
ABCF3-215	ENST00000481116	SYNE1	Q8NF91	8797 aa	Known RBP	3.99	□□□□□ -1.77
ABCF3-215	ENST00000481116	KRTAP5-3	Q6L8H2	238 aa		3.98	□□□□□ -1.77
ABCF3-215	ENST00000481116	BRK1	Q8WUW1	75 aa		3.96	□□□□□ -1.78
ABCF3-215	ENST00000481116	KRTAP9-6	A8MVA2	160 aa		3.91	□□□□□ -1.78
ABCF3-215	ENST00000481116	KRTAP6-1	Q3LI64	71 aa		3.9	□□□□□ -1.79
ABCF3-215	ENST00000481116	MT1A	P04731	61 aa		3.89	□□□□□ -1.79
ABCF3-215	ENST00000481116	KRTAP5-7	Q6L8G8	165 aa		3.88	□□□□□ -1.79
ABCF3-215	ENST00000481116	SVIP	Q8NHG7	77 aa		3.83	□□□□□ -1.8
ABCF3-215	ENST00000481116	KRTAP5-2	Q701N4	177 aa		3.78	□□□□□ -1.8
ABCF3-215	ENST00000481116	KRTAP9-4	Q9BYQ2	154 aa		3.77	□□□□□ -1.81
ABCF3-215	ENST00000481116	PMAIP1	Q13794	54 aa		3.73	□□□□□ -1.81
ABCF3-215	ENST00000481116	KRTAP6-2	Q3LI66	62 aa		3.71	□□□□□ -1.82
ABCF3-215	ENST00000481116	KRTAP4-11	Q9BYQ6	195 aa		3.71	□□□□□ -1.82
ABCF3-215	ENST00000481116	PRO0628	Q9UI54	55 aa		3.61	□□□□□ -1.83
ABCF3-215	ENST00000481116	KRTAP5-8	O75690	187 aa		3.59	□□□□□ -1.83
ABCF3-215	ENST00000481116	PRAC1	Q96KF2	57 aa		3.55	□□□□□ -1.84
ABCF3-215	ENST00000481116	MT3	P25713	68 aa		3.54	□□□□□ -1.84
ABCF3-215	ENST00000481116	OBSCN	Q5VST9	7968 aa		3.51	□□□□□ -1.85
ABCF3-215	ENST00000481116	KRTAP5-1	Q6L8H4	278 aa		3.4	□□□□□ -1.87
ABCF3-215	ENST00000481116	KTN1-AS1	Q86SY8	53 aa		3.4	□□□□□ -1.87
ABCF3-215	ENST00000481116	KRTAP9-9	Q9BYP9	154 aa		3.38	□□□□□ -1.87
ABCF3-215	ENST00000481116	MUC5B	Q9HC84	5762 aa	Predicted RBP	3.37	□□□□□ -1.87
ABCF3-215	ENST00000481116	MUC5AC	P98088	5654 aa		3.35	□□□□□ -1.87
ABCF3-215	ENST00000481116	AHNAK	Q09666	5890 aa	Known RBP	3.34	□□□□□ -1.87
ABCF3-215	ENST00000481116	LCE1E	Q5T753	118 aa		3.22	□□□□□ -1.89
ABCF3-215	ENST00000481116	KRTAP4-12	Q9BQ66	201 aa		3.15	□□□□□ -1.91
ABCF3-215	ENST00000481116	LCE1B	Q5T7P3	118 aa		3.1	□□□□□ -1.91
ABCF3-215	ENST00000481116	KRTAP4-2	Q9BYR5	136 aa		3.09	□□□□□ -1.91
ABCF3-215	ENST00000481116	LUZP6	Q538Z0	58 aa		3.01	□□□□□ -1.93
ABCF3-215	ENST00000481116	LCE1C	Q5T751	118 aa		3	□□□□□ -1.93
ABCF3-215	ENST00000481116	LCE3D	Q9BYE3	92 aa		2.95	□□□□□ -1.94
ABCF3-215	ENST00000481116	LCE3E	Q5T5B0	92 aa		2.79	□□□□□ -1.96
ABCF3-215	ENST00000481116	KRTAP5-6	Q6L8G9	129 aa	Predicted RBP	2.72	□□□□□ -1.97
ABCF3-215	ENST00000481116	KRTAP5-11	Q6L8G4	156 aa		2.71	□□□□□ -1.98
ABCF3-215	ENST00000481116		H3BS24	57 aa		2.7	□□□□□ -1.98
ABCF3-215	ENST00000481116	NDUFAF8	A1L188	74 aa		2.62	□□□□□ -1.99
ABCF3-215	ENST00000481116	LCE1F	Q5T754	118 aa		2.61	□□□□□ -1.99
ABCF3-215	ENST00000481116	KRTAP21-2	Q3LI59	83 aa		2.55	□□□□□ -2
ABCF3-215	ENST00000481116		A0A0A0MQY5	61 aa		2.48	□□□□□ -2.01
ABCF3-215	ENST00000481116	KRTAP4-4	Q9BYR3	166 aa		2.39	□□□□□ -2.03
ABCF3-215	ENST00000481116	PHGR1	C9JFL3	82 aa		2.37	□□□□□ -2.03
ABCF3-215	ENST00000481116	INE1	O15225	51 aa		2.24	□□□□□ -2.05
ABCF3-215	ENST00000481116	MUC19	Q7Z5P9	8384 aa		2.17	□□□□□ -2.06
ABCF3-215	ENST00000481116	PRM1	P04553	51 aa		2.15	□□□□□ -2.07
ABCF3-215	ENST00000481116	KRTAP21-1	Q3LI58	79 aa		1.77	□□□□□ -2.13
ABCF3-215	ENST00000481116	MUC16	Q8WXI7	14507 aa		1.57	□□□□□ -2.16

Retrieved 78 of 20,778 RNA–protein pairs in 11.3 ms