RNA–Protein interactions for RNA: ENST00000476972.6

GMDS-204, Transcript of GDP-mannose 4,6-dehydratase, human

TSL 2

Gene GMDS, Length 591 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
GMDS-204	ENST00000476972	MT1L	Q93083	61 aa		6.79	□□□□□ -1.32
GMDS-204	ENST00000476972	MT4	P47944	62 aa		6.78	□□□□□ -1.32
GMDS-204	ENST00000476972	PP632	Q6XCG6	107 aa		6.78	□□□□□ -1.32
GMDS-204	ENST00000476972	LCE4A	Q5TA78	99 aa		6.77	□□□□□ -1.33
GMDS-204	ENST00000476972	MT1M	Q8N339	61 aa		6.75	□□□□□ -1.33
GMDS-204	ENST00000476972	MIR22HG	Q0VDD5	57 aa		6.69	□□□□□ -1.34
GMDS-204	ENST00000476972	AHNAK2	Q8IVF2	5795 aa		6.68	□□□□□ -1.34
GMDS-204	ENST00000476972	PSPHP1	O15172	72 aa		6.6	□□□□□ -1.35
GMDS-204	ENST00000476972	KRTAP4-3	Q9BYR4	195 aa		6.6	□□□□□ -1.35
GMDS-204	ENST00000476972		V9GYY9	64 aa		6.6	□□□□□ -1.35
GMDS-204	ENST00000476972	KRTAP12-3	P60328	96 aa		6.59	□□□□□ -1.35
GMDS-204	ENST00000476972	KRTAP5-4	Q6L8H1	288 aa		6.59	□□□□□ -1.35
GMDS-204	ENST00000476972	KRTAP5-10	Q6L8G5	202 aa		6.58	□□□□□ -1.36
GMDS-204	ENST00000476972	KRTAP4-6	Q9BYQ5	205 aa		6.57	□□□□□ -1.36
GMDS-204	ENST00000476972		Q1T7F1	81 aa		6.56	□□□□□ -1.36
GMDS-204	ENST00000476972		K7ERS5	55 aa		6.53	□□□□□ -1.36
GMDS-204	ENST00000476972	KRTAP25-1	Q3LHN0	102 aa		6.53	□□□□□ -1.36
GMDS-204	ENST00000476972	KRTAP4-7	Q9BYR0	210 aa		6.47	□□□□□ -1.37
GMDS-204	ENST00000476972		A6NED7	52 aa		6.36	□□□□□ -1.39
GMDS-204	ENST00000476972	KRTAP5-7	Q6L8G8	165 aa		6.36	□□□□□ -1.39
GMDS-204	ENST00000476972	KRTAP5-3	Q6L8H2	238 aa		6.35	□□□□□ -1.39
GMDS-204	ENST00000476972	KRTAP23-1	A1A580	65 aa		6.27	□□□□□ -1.41
GMDS-204	ENST00000476972	KRTAP20-2	Q3LI61	65 aa		6.25	□□□□□ -1.41
GMDS-204	ENST00000476972	RPS28	P62857	69 aa	Known RBP	6.22	□□□□□ -1.41
GMDS-204	ENST00000476972	CDC42SE1	Q9NRR8	79 aa		6.21	□□□□□ -1.42
GMDS-204	ENST00000476972	KRTAP5-5	Q701N2	237 aa	Predicted RBP	6.19	□□□□□ -1.42
GMDS-204	ENST00000476972	SPRR5	A0A1B0GTR4	108 aa		6.17	□□□□□ -1.42
GMDS-204	ENST00000476972	PCP4	P48539	62 aa		6.17	□□□□□ -1.42
GMDS-204	ENST00000476972	KRTAP19-4	Q3LI73	84 aa		6.17	□□□□□ -1.42
GMDS-204	ENST00000476972	KRTAP15-1	Q3LI76	137 aa		6.17	□□□□□ -1.42
GMDS-204	ENST00000476972	LOC100996750	A0A140TA64	210 aa		6.12	□□□□□ -1.43
GMDS-204	ENST00000476972	KRTAP12-4	P60329	112 aa		6.11	□□□□□ -1.43
GMDS-204	ENST00000476972	ROMO1	P60602	79 aa		6.11	□□□□□ -1.43
GMDS-204	ENST00000476972	LCE3C	Q5T5A8	94 aa		6.07	□□□□□ -1.44
GMDS-204	ENST00000476972	SYNE1	Q8NF91	8797 aa	Known RBP	6	□□□□□ -1.45
GMDS-204	ENST00000476972	KRTAP4-11	Q9BYQ6	195 aa		5.8	□□□□□ -1.48
GMDS-204	ENST00000476972	MT1A	P04731	61 aa		5.77	□□□□□ -1.49
GMDS-204	ENST00000476972	KRTAP9-6	A8MVA2	160 aa		5.75	□□□□□ -1.49
GMDS-204	ENST00000476972	KRTAP6-1	Q3LI64	71 aa		5.74	□□□□□ -1.49
GMDS-204	ENST00000476972	KRTAP5-2	Q701N4	177 aa		5.7	□□□□□ -1.5
GMDS-204	ENST00000476972	AHNAK	Q09666	5890 aa	Known RBP	5.64	□□□□□ -1.51
GMDS-204	ENST00000476972	KRTAP5-8	O75690	187 aa		5.61	□□□□□ -1.51
GMDS-204	ENST00000476972	MUC5AC	P98088	5654 aa		5.61	□□□□□ -1.51
GMDS-204	ENST00000476972	MUC5B	Q9HC84	5762 aa	Predicted RBP	5.6	□□□□□ -1.51
GMDS-204	ENST00000476972	KRTAP9-4	Q9BYQ2	154 aa		5.56	□□□□□ -1.52
GMDS-204	ENST00000476972	BRK1	Q8WUW1	75 aa		5.49	□□□□□ -1.53
GMDS-204	ENST00000476972	KRTAP6-2	Q3LI66	62 aa		5.48	□□□□□ -1.53
GMDS-204	ENST00000476972	OBSCN	Q5VST9	7968 aa		5.46	□□□□□ -1.53
GMDS-204	ENST00000476972	KRTAP9-9	Q9BYP9	154 aa		5.38	□□□□□ -1.55
GMDS-204	ENST00000476972	MT3	P25713	68 aa		5.26	□□□□□ -1.57
GMDS-204	ENST00000476972	KRTAP5-1	Q6L8H4	278 aa		5.19	□□□□□ -1.58
GMDS-204	ENST00000476972	PMAIP1	Q13794	54 aa		5.13	□□□□□ -1.59
GMDS-204	ENST00000476972	PRAC1	Q96KF2	57 aa		5	□□□□□ -1.61
GMDS-204	ENST00000476972	LCE1E	Q5T753	118 aa		4.84	□□□□□ -1.63
GMDS-204	ENST00000476972	PRO0628	Q9UI54	55 aa		4.75	□□□□□ -1.65
GMDS-204	ENST00000476972	LCE1B	Q5T7P3	118 aa		4.61	□□□□□ -1.67
GMDS-204	ENST00000476972	KRTAP4-2	Q9BYR5	136 aa		4.61	□□□□□ -1.67
GMDS-204	ENST00000476972	KTN1-AS1	Q86SY8	53 aa		4.57	□□□□□ -1.68
GMDS-204	ENST00000476972	LCE1C	Q5T751	118 aa		4.49	□□□□□ -1.69
GMDS-204	ENST00000476972	SVIP	Q8NHG7	77 aa		4.41	□□□□□ -1.7
GMDS-204	ENST00000476972	LCE3D	Q9BYE3	92 aa		4.38	□□□□□ -1.71
GMDS-204	ENST00000476972	KRTAP4-12	Q9BQ66	201 aa		4.35	□□□□□ -1.71
GMDS-204	ENST00000476972	LUZP6	Q538Z0	58 aa		4.18	□□□□□ -1.74
GMDS-204	ENST00000476972	LCE3E	Q5T5B0	92 aa		4.12	□□□□□ -1.75
GMDS-204	ENST00000476972	KRTAP5-6	Q6L8G9	129 aa	Predicted RBP	4.09	□□□□□ -1.75
GMDS-204	ENST00000476972	KRTAP5-11	Q6L8G4	156 aa		4.08	□□□□□ -1.76
GMDS-204	ENST00000476972	LCE1F	Q5T754	118 aa		4.06	□□□□□ -1.76
GMDS-204	ENST00000476972	PHGR1	C9JFL3	82 aa		3.85	□□□□□ -1.79
GMDS-204	ENST00000476972	KRTAP21-2	Q3LI59	83 aa		3.78	□□□□□ -1.8
GMDS-204	ENST00000476972	KRTAP4-4	Q9BYR3	166 aa		3.49	□□□□□ -1.85
GMDS-204	ENST00000476972	MUC19	Q7Z5P9	8384 aa		3.39	□□□□□ -1.87
GMDS-204	ENST00000476972	NDUFAF8	A1L188	74 aa		3.34	□□□□□ -1.87
GMDS-204	ENST00000476972	PRM1	P04553	51 aa		3.14	□□□□□ -1.91
GMDS-204	ENST00000476972	KRTAP21-1	Q3LI58	79 aa		2.92	□□□□□ -1.94
GMDS-204	ENST00000476972	INE1	O15225	51 aa		2.65	□□□□□ -1.99
GMDS-204	ENST00000476972		A0A0A0MQY5	61 aa		2.57	□□□□□ -2
GMDS-204	ENST00000476972		H3BS24	57 aa		2.43	□□□□□ -2.02
GMDS-204	ENST00000476972	MUC16	Q8WXI7	14507 aa		2.29	□□□□□ -2.04

Retrieved 78 of 20,778 RNA–protein pairs in 9.2 ms