RNA–Protein interactions for RNA: ENST00000472880.1

COL9A3-210, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 959 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-210ENST00000472880 UQCR11O14957 56 aa6.98□□□□□ -1.29
COL9A3-210ENST00000472880 C10orf95Q9H7T3 257 aa6.98□□□□□ -1.29
COL9A3-210ENST00000472880 HMCN1Q96RW7 5635 aa6.95□□□□□ -1.3
COL9A3-210ENST00000472880 TNP1P09430 55 aa6.92□□□□□ -1.3
COL9A3-210ENST00000472880 LCE3AQ5TA76 89 aa6.91□□□□□ -1.3
COL9A3-210ENST00000472880 KRTAP4-3Q9BYR4 195 aa6.87□□□□□ -1.31
COL9A3-210ENST00000472880 MIR22HGQ0VDD5 57 aa6.84□□□□□ -1.31
COL9A3-210ENST00000472880 KRTAP5-4Q6L8H1 288 aa6.84□□□□□ -1.31
COL9A3-210ENST00000472880 V9GYY9 64 aa6.83□□□□□ -1.32
COL9A3-210ENST00000472880 Q1T7F1 81 aa6.79□□□□□ -1.32
COL9A3-210ENST00000472880 PSPHP1O15172 72 aa6.78□□□□□ -1.32
COL9A3-210ENST00000472880 AHNAK2Q8IVF2 5795 aa6.77□□□□□ -1.33
COL9A3-210ENST00000472880 KRTAP4-6Q9BYQ5 205 aa6.74□□□□□ -1.33
COL9A3-210ENST00000472880 KRTAP5-10Q6L8G5 202 aa6.7□□□□□ -1.34
COL9A3-210ENST00000472880 K7ERS5 55 aa6.67□□□□□ -1.34
COL9A3-210ENST00000472880 KRTAP12-3P60328 96 aa6.65□□□□□ -1.34
COL9A3-210ENST00000472880 KRTAP4-7Q9BYR0 210 aa6.64□□□□□ -1.35
COL9A3-210ENST00000472880 KRTAP25-1Q3LHN0 102 aa6.6□□□□□ -1.35
COL9A3-210ENST00000472880 A6NED7 52 aa6.56□□□□□ -1.36
COL9A3-210ENST00000472880 PCP4P48539 62 aa6.56□□□□□ -1.36
COL9A3-210ENST00000472880 RPS28P62857 69 aaKnown RBP6.54□□□□□ -1.36
COL9A3-210ENST00000472880 KRTAP5-3Q6L8H2 238 aa6.5□□□□□ -1.37
COL9A3-210ENST00000472880 KRTAP20-2Q3LI61 65 aa6.49□□□□□ -1.37
COL9A3-210ENST00000472880 KRTAP5-7Q6L8G8 165 aa6.48□□□□□ -1.37
COL9A3-210ENST00000472880 KRTAP5-5Q701N2 237 aaPredicted RBP6.46□□□□□ -1.38
COL9A3-210ENST00000472880 SPRR5A0A1B0GTR4 108 aa6.43□□□□□ -1.38
COL9A3-210ENST00000472880 KRTAP12-4P60329 112 aa6.39□□□□□ -1.39
COL9A3-210ENST00000472880 KRTAP23-1A1A580 65 aa6.36□□□□□ -1.39
COL9A3-210ENST00000472880 CDC42SE1Q9NRR8 79 aa6.35□□□□□ -1.39
COL9A3-210ENST00000472880 LOC100996750A0A140TA64 210 aa6.31□□□□□ -1.4
COL9A3-210ENST00000472880 ROMO1P60602 79 aa6.25□□□□□ -1.41
COL9A3-210ENST00000472880 KRTAP19-4Q3LI73 84 aa6.24□□□□□ -1.41
COL9A3-210ENST00000472880 SYNE1Q8NF91 8797 aaKnown RBP6.22□□□□□ -1.41
COL9A3-210ENST00000472880 KRTAP15-1Q3LI76 137 aa6.2□□□□□ -1.42
COL9A3-210ENST00000472880 LCE3CQ5T5A8 94 aa6.09□□□□□ -1.43
COL9A3-210ENST00000472880 MT1AP04731 61 aa5.97□□□□□ -1.45
COL9A3-210ENST00000472880 KRTAP4-11Q9BYQ6 195 aa5.97□□□□□ -1.45
COL9A3-210ENST00000472880 KRTAP5-2Q701N4 177 aa5.95□□□□□ -1.46
COL9A3-210ENST00000472880 KRTAP6-1Q3LI64 71 aa5.94□□□□□ -1.46
COL9A3-210ENST00000472880 KRTAP9-4Q9BYQ2 154 aa5.78□□□□□ -1.48
COL9A3-210ENST00000472880 KRTAP5-8O75690 187 aa5.77□□□□□ -1.49
COL9A3-210ENST00000472880 BRK1Q8WUW1 75 aa5.76□□□□□ -1.49
COL9A3-210ENST00000472880 KRTAP9-6A8MVA2 160 aa5.73□□□□□ -1.49
COL9A3-210ENST00000472880 KRTAP6-2Q3LI66 62 aa5.73□□□□□ -1.49
COL9A3-210ENST00000472880 SVIPQ8NHG7 77 aa5.72□□□□□ -1.49
COL9A3-210ENST00000472880 MUC5ACP98088 5654 aa5.64□□□□□ -1.51
COL9A3-210ENST00000472880 OBSCNQ5VST9 7968 aa5.61□□□□□ -1.51
COL9A3-210ENST00000472880 AHNAKQ09666 5890 aaKnown RBP5.61□□□□□ -1.51
COL9A3-210ENST00000472880 MUC5BQ9HC84 5762 aaPredicted RBP5.57□□□□□ -1.52
COL9A3-210ENST00000472880 KRTAP9-9Q9BYP9 154 aa5.55□□□□□ -1.52
COL9A3-210ENST00000472880 MT3P25713 68 aa5.48□□□□□ -1.53
COL9A3-210ENST00000472880 PMAIP1Q13794 54 aa5.41□□□□□ -1.54
COL9A3-210ENST00000472880 KRTAP5-1Q6L8H4 278 aa5.37□□□□□ -1.55
COL9A3-210ENST00000472880 PRAC1Q96KF2 57 aa5.21□□□□□ -1.58
COL9A3-210ENST00000472880 PRO0628Q9UI54 55 aa5.09□□□□□ -1.59
COL9A3-210ENST00000472880 LCE1EQ5T753 118 aa5.06□□□□□ -1.6
COL9A3-210ENST00000472880 KTN1-AS1Q86SY8 53 aa4.86□□□□□ -1.63
COL9A3-210ENST00000472880 LCE1BQ5T7P3 118 aa4.82□□□□□ -1.64
COL9A3-210ENST00000472880 KRTAP4-2Q9BYR5 136 aa4.81□□□□□ -1.64
COL9A3-210ENST00000472880 LCE1CQ5T751 118 aa4.7□□□□□ -1.66
COL9A3-210ENST00000472880 KRTAP4-12Q9BQ66 201 aa4.46□□□□□ -1.7
COL9A3-210ENST00000472880 H3BS24 57 aa4.45□□□□□ -1.7
COL9A3-210ENST00000472880 LCE3DQ9BYE3 92 aa4.4□□□□□ -1.71
COL9A3-210ENST00000472880 LUZP6Q538Z0 58 aa4.36□□□□□ -1.71
COL9A3-210ENST00000472880 KRTAP5-11Q6L8G4 156 aa4.3□□□□□ -1.72
COL9A3-210ENST00000472880 A0A0A0MQY5 61 aa4.27□□□□□ -1.73
COL9A3-210ENST00000472880 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.24□□□□□ -1.73
COL9A3-210ENST00000472880 LCE1FQ5T754 118 aa4.23□□□□□ -1.73
COL9A3-210ENST00000472880 LCE3EQ5T5B0 92 aa4.17□□□□□ -1.74
COL9A3-210ENST00000472880 PHGR1C9JFL3 82 aa3.94□□□□□ -1.78
COL9A3-210ENST00000472880 KRTAP21-2Q3LI59 83 aa3.9□□□□□ -1.79
COL9A3-210ENST00000472880 KRTAP4-4Q9BYR3 166 aa3.63□□□□□ -1.83
COL9A3-210ENST00000472880 NDUFAF8A1L188 74 aa3.58□□□□□ -1.84
COL9A3-210ENST00000472880 MUC19Q7Z5P9 8384 aa3.48□□□□□ -1.85
COL9A3-210ENST00000472880 PRM1P04553 51 aa3.21□□□□□ -1.9
COL9A3-210ENST00000472880 KRTAP21-1Q3LI58 79 aa3□□□□□ -1.93
COL9A3-210ENST00000472880 INE1O15225 51 aa2.89□□□□□ -1.95
COL9A3-210ENST00000472880 MUC16Q8WXI7 14507 aa2.47□□□□□ -2.01
Retrieved 78 of 20,778 RNA–protein pairs in 108.6 ms