RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 ACYP2P14621 99 aa2.91□□□□□ -1.94
VPS41-208ENST00000448833 SPANXA2-OT1Q8N9U9 137 aa2.91□□□□□ -1.94
VPS41-208ENST00000448833 CYSTM1Q9H1C7 97 aa2.9□□□□□ -1.95
VPS41-208ENST00000448833 KRTAP2-2Q9BYT5 123 aa2.89□□□□□ -1.95
VPS41-208ENST00000448833 KRTAP2-1Q9BYU5 128 aa2.89□□□□□ -1.95
VPS41-208ENST00000448833 SPRR2DP22532 72 aa2.85□□□□□ -1.95
VPS41-208ENST00000448833 MT3P25713 68 aa2.85□□□□□ -1.95
VPS41-208ENST00000448833 ROMO1P60602 79 aa2.85□□□□□ -1.95
VPS41-208ENST00000448833 CHKB-CPT1BH3BT56 60 aa2.84□□□□□ -1.95
VPS41-208ENST00000448833 KRTAP10-12P60413 245 aa2.83□□□□□ -1.96
VPS41-208ENST00000448833 CDC42SE1Q9NRR8 79 aa2.83□□□□□ -1.96
VPS41-208ENST00000448833 COA5Q86WW8 74 aa2.81□□□□□ -1.96
VPS41-208ENST00000448833 NDUFAF8A1L188 74 aa2.77□□□□□ -1.97
VPS41-208ENST00000448833 KRTAP5-1Q6L8H4 278 aa2.77□□□□□ -1.97
VPS41-208ENST00000448833 MIR22HGQ0VDD5 57 aa2.76□□□□□ -1.97
VPS41-208ENST00000448833 PRR15LQ9BU68 103 aa2.75□□□□□ -1.97
VPS41-208ENST00000448833 KRTAP5-4Q6L8H1 288 aa2.73□□□□□ -1.97
VPS41-208ENST00000448833 A0A1B0GU33 70 aa2.7□□□□□ -1.98
VPS41-208ENST00000448833 A0A1B0GU69 56 aa2.7□□□□□ -1.98
VPS41-208ENST00000448833 LCE1EQ5T753 118 aa2.69□□□□□ -1.98
VPS41-208ENST00000448833 KRTAP4-4Q9BYR3 166 aa2.69□□□□□ -1.98
VPS41-208ENST00000448833 LINC01558Q9Y6Z2 57 aa2.69□□□□□ -1.98
VPS41-208ENST00000448833 DSTQ03001 7570 aaKnown RBP2.69□□□□□ -1.98
VPS41-208ENST00000448833 KRTAP13-4Q3LI77 160 aa2.67□□□□□ -1.98
VPS41-208ENST00000448833 KRTAP19-3Q7Z4W3 81 aa2.64□□□□□ -1.99
VPS41-208ENST00000448833 UQCR11O14957 56 aa2.63□□□□□ -1.99
VPS41-208ENST00000448833 KRTAP19-7Q3SYF9 63 aa2.63□□□□□ -1.99
VPS41-208ENST00000448833 PP632Q6XCG6 107 aa2.63□□□□□ -1.99
VPS41-208ENST00000448833 A0A0D9SG42 100 aa2.62□□□□□ -1.99
VPS41-208ENST00000448833 MT1EP04732 61 aa2.62□□□□□ -1.99
VPS41-208ENST00000448833 SPINT4Q6UDR6 99 aa2.62□□□□□ -1.99
VPS41-208ENST00000448833 A8MU10 97 aa2.61□□□□□ -1.99
VPS41-208ENST00000448833 MT1GP13640 62 aa2.61□□□□□ -1.99
VPS41-208ENST00000448833 KRTAP25-1Q3LHN0 102 aa2.6□□□□□ -1.99
VPS41-208ENST00000448833 SPATA8Q6RVD6 105 aa2.59□□□□□ -1.99
VPS41-208ENST00000448833 GPR98Q8WXG9 6306 aa2.58□□□□□ -2
VPS41-208ENST00000448833 LCE1FQ5T754 118 aa2.57□□□□□ -2
VPS41-208ENST00000448833 KRTAP12-1P59990 96 aa2.56□□□□□ -2
VPS41-208ENST00000448833 KRTAP19-5Q3LI72 72 aa2.55□□□□□ -2
VPS41-208ENST00000448833 TNP1P09430 55 aa2.54□□□□□ -2
VPS41-208ENST00000448833 MT1MQ8N339 61 aa2.5□□□□□ -2.01
VPS41-208ENST00000448833 MT1LQ93083 61 aa2.49□□□□□ -2.01
VPS41-208ENST00000448833 C10orf95Q9H7T3 257 aa2.48□□□□□ -2.01
VPS41-208ENST00000448833 HMCN1Q96RW7 5635 aa2.48□□□□□ -2.01
VPS41-208ENST00000448833 MT4P47944 62 aa2.47□□□□□ -2.01
VPS41-208ENST00000448833 LCE3AQ5TA76 89 aa2.46□□□□□ -2.02
VPS41-208ENST00000448833 OBSCNQ5VST9 7968 aa2.46□□□□□ -2.02
VPS41-208ENST00000448833 KRTAP12-3P60328 96 aa2.41□□□□□ -2.02
VPS41-208ENST00000448833 LCE3CQ5T5A8 94 aa2.41□□□□□ -2.02
VPS41-208ENST00000448833 KRTAP4-3Q9BYR4 195 aa2.4□□□□□ -2.03
VPS41-208ENST00000448833 AHNAK2Q8IVF2 5795 aa2.4□□□□□ -2.03
VPS41-208ENST00000448833 INE1O15225 51 aa2.37□□□□□ -2.03
VPS41-208ENST00000448833 KRTAP5-10Q6L8G5 202 aa2.37□□□□□ -2.03
VPS41-208ENST00000448833 SPRR5A0A1B0GTR4 108 aa2.34□□□□□ -2.03
VPS41-208ENST00000448833 KRTAP12-4P60329 112 aa2.34□□□□□ -2.03
VPS41-208ENST00000448833 KRTAP5-2Q701N4 177 aa2.32□□□□□ -2.04
VPS41-208ENST00000448833 KRTAP5-7Q6L8G8 165 aa2.31□□□□□ -2.04
VPS41-208ENST00000448833 KRTAP20-2Q3LI61 65 aa2.3□□□□□ -2.04
VPS41-208ENST00000448833 KRTAP5-5Q701N2 237 aaPredicted RBP2.29□□□□□ -2.04
VPS41-208ENST00000448833 KRTAP9-6A8MVA2 160 aa2.23□□□□□ -2.05
VPS41-208ENST00000448833 LCE3EQ5T5B0 92 aa2.21□□□□□ -2.06
VPS41-208ENST00000448833 SYNE1Q8NF91 8797 aaKnown RBP2.15□□□□□ -2.07
VPS41-208ENST00000448833 MT1AP04731 61 aa2.14□□□□□ -2.07
VPS41-208ENST00000448833 KRTAP6-1Q3LI64 71 aa2.1□□□□□ -2.07
VPS41-208ENST00000448833 KRTAP5-8O75690 187 aa2.04□□□□□ -2.08
VPS41-208ENST00000448833 KRTAP6-2Q3LI66 62 aa2.04□□□□□ -2.08
VPS41-208ENST00000448833 AHNAKQ09666 5890 aaKnown RBP1.99□□□□□ -2.09
VPS41-208ENST00000448833 MUC5ACP98088 5654 aa1.99□□□□□ -2.09
VPS41-208ENST00000448833 MUC5BQ9HC84 5762 aaPredicted RBP1.98□□□□□ -2.09
VPS41-208ENST00000448833 LCE3DQ9BYE3 92 aa1.86□□□□□ -2.11
VPS41-208ENST00000448833 LCE1CQ5T751 118 aa1.72□□□□□ -2.13
VPS41-208ENST00000448833 LCE1BQ5T7P3 118 aa1.72□□□□□ -2.13
VPS41-208ENST00000448833 MUC19Q7Z5P9 8384 aa1.5□□□□□ -2.17
VPS41-208ENST00000448833 PHGR1C9JFL3 82 aa1.39□□□□□ -2.19
VPS41-208ENST00000448833 KRTAP21-2Q3LI59 83 aa1.39□□□□□ -2.19
VPS41-208ENST00000448833 PRM1P04553 51 aa1.21□□□□□ -2.22
VPS41-208ENST00000448833 KRTAP21-1Q3LI58 79 aa1.09□□□□□ -2.23
VPS41-208ENST00000448833 MUC16Q8WXI7 14507 aa0.86□□□□□ -2.27
Retrieved 78 of 20,778 RNA–protein pairs in 13 ms