RNA–Protein interactions for RNA: ENST00000448238.2

NIPBL-202, Transcript of NIPBL, cohesin loading factor, humanhuman

TSL 1 (best) BASIC

Gene NIPBL, Length 8,729 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-202ENST00000448238 KRTAP20-1Q3LI63 56 aa2.29□□□□□ -2.04
NIPBL-202ENST00000448238 LRP1BQ9NZR2 4599 aa2.29□□□□□ -2.04
NIPBL-202ENST00000448238 KRTAP4-3Q9BYR4 195 aa2.25□□□□□ -2.05
NIPBL-202ENST00000448238 KRTAP9-4Q9BYQ2 154 aa2.24□□□□□ -2.05
NIPBL-202ENST00000448238 SYNE2Q8WXH0 6885 aaKnown RBP2.22□□□□□ -2.05
NIPBL-202ENST00000448238 KRTAP9-9Q9BYP9 154 aa2.21□□□□□ -2.06
NIPBL-202ENST00000448238 TNXBP22105 4242 aa2.2□□□□□ -2.06
NIPBL-202ENST00000448238 KRTAP19-7Q3SYF9 63 aa2.17□□□□□ -2.06
NIPBL-202ENST00000448238 KRTAP9-2Q9BYQ4 174 aa2.17□□□□□ -2.06
NIPBL-202ENST00000448238 RYR1P21817 5038 aa2.16□□□□□ -2.06
NIPBL-202ENST00000448238 KRTAP9-7A8MTY7 169 aa2.15□□□□□ -2.06
NIPBL-202ENST00000448238 MUC17Q685J3 4493 aa2.15□□□□□ -2.07
NIPBL-202ENST00000448238 KRTAP6-1Q3LI64 71 aa2.15□□□□□ -2.07
NIPBL-202ENST00000448238 LCE2AQ5TA79 106 aaPredicted RBP2.14□□□□□ -2.07
NIPBL-202ENST00000448238 DNHD1Q96M86 4753 aa2.07□□□□□ -2.08
NIPBL-202ENST00000448238 LPAP08519 4548 aa2.06□□□□□ -2.08
NIPBL-202ENST00000448238 KRTAP4-11Q9BYQ6 195 aa2.04□□□□□ -2.08
NIPBL-202ENST00000448238 KRTAP9-6A0A140TA67 174 aa2.03□□□□□ -2.08
NIPBL-202ENST00000448238 KRTAP6-3Q3LI67 103 aa2.02□□□□□ -2.09
NIPBL-202ENST00000448238 LRP2P98164 4655 aa2.02□□□□□ -2.09
NIPBL-202ENST00000448238 KRTAP19-2Q3LHN2 52 aa2.01□□□□□ -2.09
NIPBL-202ENST00000448238 RYR3Q15413 4870 aa2□□□□□ -2.09
NIPBL-202ENST00000448238 KRTAP20-2Q3LI61 65 aa1.98□□□□□ -2.09
NIPBL-202ENST00000448238 OBSCNQ5VST9 7968 aa1.96□□□□□ -2.1
NIPBL-202ENST00000448238 FSIP2Q5CZC0 6907 aa1.94□□□□□ -2.1
NIPBL-202ENST00000448238 KRTAP9-6A8MVA2 160 aa1.93□□□□□ -2.1
NIPBL-202ENST00000448238 PCLOQ9Y6V0 5065 aa1.93□□□□□ -2.1
NIPBL-202ENST00000448238 KMT2CQ8NEZ4 4911 aaKnown RBP1.92□□□□□ -2.1
NIPBL-202ENST00000448238 KIAA1109Q2LD37 5005 aa1.91□□□□□ -2.1
NIPBL-202ENST00000448238 MUC19Q7Z5P9 8384 aa1.88□□□□□ -2.11
NIPBL-202ENST00000448238 HERC2O95714 4834 aa1.87□□□□□ -2.11
NIPBL-202ENST00000448238 RYR2Q92736 4967 aa1.85□□□□□ -2.11
NIPBL-202ENST00000448238 HERC1Q15751 4861 aa1.81□□□□□ -2.12
NIPBL-202ENST00000448238 BIRC6Q9NR09 4857 aa1.8□□□□□ -2.12
NIPBL-202ENST00000448238 KRTAP9-1A8MXZ3 250 aaPredicted RBP1.79□□□□□ -2.12
NIPBL-202ENST00000448238 MACF1Q9UPN3 7388 aaKnown RBP1.78□□□□□ -2.12
NIPBL-202ENST00000448238 DSTQ03001 7570 aaKnown RBP1.76□□□□□ -2.13
NIPBL-202ENST00000448238 EPPK1P58107 5090 aaKnown RBP1.75□□□□□ -2.13
NIPBL-202ENST00000448238 HYDINQ4G0P3 5121 aa1.74□□□□□ -2.13
NIPBL-202ENST00000448238 KRTAP4-4Q9BYR3 166 aa1.73□□□□□ -2.13
NIPBL-202ENST00000448238 HMCN2Q8NDA2 5059 aa1.69□□□□□ -2.14
NIPBL-202ENST00000448238 UBR4Q5T4S7 5183 aa1.64□□□□□ -2.15
NIPBL-202ENST00000448238 ABCA13Q86UQ4 5058 aa1.64□□□□□ -2.15
NIPBL-202ENST00000448238 KRTAP4-12Q9BQ66 201 aa1.63□□□□□ -2.15
NIPBL-202ENST00000448238 KRTAP4-2Q9BYR5 136 aa1.63□□□□□ -2.15
NIPBL-202ENST00000448238 KRTAP4-6Q9BYQ5 205 aa1.62□□□□□ -2.15
NIPBL-202ENST00000448238 RNF213Q63HN8 5207 aa1.62□□□□□ -2.15
NIPBL-202ENST00000448238 MUC2Q02817 5179 aa1.62□□□□□ -2.15
NIPBL-202ENST00000448238 KRTAP5-4Q6L8H1 288 aa1.52□□□□□ -2.17
NIPBL-202ENST00000448238 KMT2DO14686 5537 aa1.52□□□□□ -2.17
NIPBL-202ENST00000448238 FAT4Q6V0I7 4981 aa1.51□□□□□ -2.17
NIPBL-202ENST00000448238 MDN1Q9NU22 5596 aa1.5□□□□□ -2.17
NIPBL-202ENST00000448238 KRTAP5-9P26371 169 aa1.5□□□□□ -2.17
NIPBL-202ENST00000448238 FCGBPQ9Y6R7 5405 aaPredicted RBP1.49□□□□□ -2.17
NIPBL-202ENST00000448238 KRTAP5-5Q701N2 237 aaPredicted RBP1.49□□□□□ -2.17
NIPBL-202ENST00000448238 GPR98Q8WXG9 6306 aa1.46□□□□□ -2.18
NIPBL-202ENST00000448238 NEBP20929 6669 aa1.44□□□□□ -2.18
NIPBL-202ENST00000448238 MUC5BQ9HC84 5762 aaPredicted RBP1.42□□□□□ -2.18
NIPBL-202ENST00000448238 USH2AO75445 5202 aa1.36□□□□□ -2.19
NIPBL-202ENST00000448238 PHGR1C9JFL3 82 aa1.35□□□□□ -2.19
NIPBL-202ENST00000448238 KRTAP5-2Q701N4 177 aa1.35□□□□□ -2.19
NIPBL-202ENST00000448238 MUC5ACP98088 5654 aa1.33□□□□□ -2.2
NIPBL-202ENST00000448238 KRTAP5-3Q6L8H2 238 aa1.32□□□□□ -2.2
NIPBL-202ENST00000448238 MUC12Q9UKN1 5478 aa1.3□□□□□ -2.2
NIPBL-202ENST00000448238 HMCN1Q96RW7 5635 aa1.28□□□□□ -2.2
NIPBL-202ENST00000448238 KRTAP5-10Q6L8G5 202 aa1.24□□□□□ -2.21
NIPBL-202ENST00000448238 KRTAP21-1Q3LI58 79 aa1.24□□□□□ -2.21
NIPBL-202ENST00000448238 SSPOA2VEC9 5147 aa1.23□□□□□ -2.21
NIPBL-202ENST00000448238 KRTAP5-11Q6L8G4 156 aa1.1□□□□□ -2.23
NIPBL-202ENST00000448238 AHNAK2Q8IVF2 5795 aa1.09□□□□□ -2.23
NIPBL-202ENST00000448238 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.09□□□□□ -2.23
NIPBL-202ENST00000448238 KRTAP5-8O75690 187 aa1.09□□□□□ -2.24
NIPBL-202ENST00000448238 KRTAP5-1Q6L8H4 278 aa1.02□□□□□ -2.25
NIPBL-202ENST00000448238 AHNAKQ09666 5890 aaKnown RBP1.01□□□□□ -2.25
NIPBL-202ENST00000448238 KRTAP21-2Q3LI59 83 aa0.92□□□□□ -2.26
NIPBL-202ENST00000448238 MUC16Q8WXI7 14507 aa0.91□□□□□ -2.26
NIPBL-202ENST00000448238 KRTAP5-7Q6L8G8 165 aa0.69□□□□□ -2.3
Retrieved 77 of 20,778 RNA–protein pairs in 60.7 ms