RNA–Protein interactions for RNA: ENST00000446349.5

PTPN3-204, Transcript of protein tyrosine phosphatase, non-receptor type 3, humanhuman

TSL 1 (best) BASIC

Gene PTPN3, Length 8,630 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN3-204ENST00000446349 LCE4AQ5TA78 99 aa2.57□□□□□ -2
PTPN3-204ENST00000446349 MT1AP04731 61 aa2.57□□□□□ -2
PTPN3-204ENST00000446349 LRP2P98164 4655 aa2.57□□□□□ -2
PTPN3-204ENST00000446349 KRTAP9-7A8MTY7 169 aa2.56□□□□□ -2
PTPN3-204ENST00000446349 KIAA1109Q2LD37 5005 aa2.55□□□□□ -2
PTPN3-204ENST00000446349 PCLOQ9Y6V0 5065 aa2.54□□□□□ -2
PTPN3-204ENST00000446349 LPAP08519 4548 aa2.52□□□□□ -2.01
PTPN3-204ENST00000446349 LCE1DQ5T752 114 aa2.5□□□□□ -2.01
PTPN3-204ENST00000446349 KRTAP4-7Q9BYR0 210 aa2.48□□□□□ -2.01
PTPN3-204ENST00000446349 LCE1BQ5T7P3 118 aa2.48□□□□□ -2.01
PTPN3-204ENST00000446349 KRTAP19-7Q3SYF9 63 aa2.48□□□□□ -2.01
PTPN3-204ENST00000446349 KRTAP2-2Q9BYT5 123 aa2.48□□□□□ -2.01
PTPN3-204ENST00000446349 KRTAP2-1Q9BYU5 128 aa2.48□□□□□ -2.01
PTPN3-204ENST00000446349 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.43□□□□□ -2.02
PTPN3-204ENST00000446349 KMT2CQ8NEZ4 4911 aaKnown RBP2.43□□□□□ -2.02
PTPN3-204ENST00000446349 PRM1P04553 51 aa2.43□□□□□ -2.02
PTPN3-204ENST00000446349 HYDINQ4G0P3 5121 aa2.42□□□□□ -2.02
PTPN3-204ENST00000446349 LCE5AQ5TCM9 118 aa2.4□□□□□ -2.03
PTPN3-204ENST00000446349 LOC100996750A0A140TA64 210 aa2.38□□□□□ -2.03
PTPN3-204ENST00000446349 KRTAP9-4Q9BYQ2 154 aa2.37□□□□□ -2.03
PTPN3-204ENST00000446349 KRTAP4-3Q9BYR4 195 aa2.36□□□□□ -2.03
PTPN3-204ENST00000446349 EPPK1P58107 5090 aaKnown RBP2.3□□□□□ -2.04
PTPN3-204ENST00000446349 KRTAP6-2Q3LI66 62 aa2.28□□□□□ -2.05
PTPN3-204ENST00000446349 HMCN2Q8NDA2 5059 aa2.27□□□□□ -2.05
PTPN3-204ENST00000446349 KRTAP6-1Q3LI64 71 aa2.25□□□□□ -2.05
PTPN3-204ENST00000446349 KRTAP9-9Q9BYP9 154 aa2.22□□□□□ -2.05
PTPN3-204ENST00000446349 RNF213Q63HN8 5207 aa2.21□□□□□ -2.06
PTPN3-204ENST00000446349 FAT4Q6V0I7 4981 aa2.2□□□□□ -2.06
PTPN3-204ENST00000446349 LCE1CQ5T751 118 aa2.19□□□□□ -2.06
PTPN3-204ENST00000446349 LCE1EQ5T753 118 aa2.19□□□□□ -2.06
PTPN3-204ENST00000446349 LCE1FQ5T754 118 aa2.19□□□□□ -2.06
PTPN3-204ENST00000446349 KRTAP4-9Q9BYQ8 210 aa2.18□□□□□ -2.06
PTPN3-204ENST00000446349 KRTAP5-9P26371 169 aa2.18□□□□□ -2.06
PTPN3-204ENST00000446349 SYNE2Q8WXH0 6885 aaKnown RBP2.18□□□□□ -2.06
PTPN3-204ENST00000446349 ABCA13Q86UQ4 5058 aa2.15□□□□□ -2.06
PTPN3-204ENST00000446349 SYNE1Q8NF91 8797 aaKnown RBP2.13□□□□□ -2.07
PTPN3-204ENST00000446349 KRTAP9-6A8MVA2 160 aa2.07□□□□□ -2.08
PTPN3-204ENST00000446349 UBR4Q5T4S7 5183 aa2.06□□□□□ -2.08
PTPN3-204ENST00000446349 FSIP2Q5CZC0 6907 aa2.03□□□□□ -2.08
PTPN3-204ENST00000446349 MUC2Q02817 5179 aa2□□□□□ -2.09
PTPN3-204ENST00000446349 OBSCNQ5VST9 7968 aa1.99□□□□□ -2.09
PTPN3-204ENST00000446349 KRTAP20-2Q3LI61 65 aa1.97□□□□□ -2.09
PTPN3-204ENST00000446349 KRTAP5-4Q6L8H1 288 aa1.96□□□□□ -2.1
PTPN3-204ENST00000446349 NEBP20929 6669 aa1.92□□□□□ -2.1
PTPN3-204ENST00000446349 KRTAP4-6Q9BYQ5 205 aa1.87□□□□□ -2.11
PTPN3-204ENST00000446349 KRTAP4-11Q9BYQ6 195 aa1.81□□□□□ -2.12
PTPN3-204ENST00000446349 SSPOA2VEC9 5147 aa1.81□□□□□ -2.12
PTPN3-204ENST00000446349 DSTQ03001 7570 aaKnown RBP1.79□□□□□ -2.12
PTPN3-204ENST00000446349 MACF1Q9UPN3 7388 aaKnown RBP1.76□□□□□ -2.13
PTPN3-204ENST00000446349 KRTAP5-5Q701N2 237 aaPredicted RBP1.71□□□□□ -2.14
PTPN3-204ENST00000446349 KRTAP5-3Q6L8H2 238 aa1.69□□□□□ -2.14
PTPN3-204ENST00000446349 FCGBPQ9Y6R7 5405 aaPredicted RBP1.67□□□□□ -2.14
PTPN3-204ENST00000446349 MUC12Q9UKN1 5478 aa1.66□□□□□ -2.14
PTPN3-204ENST00000446349 MDN1Q9NU22 5596 aa1.66□□□□□ -2.14
PTPN3-204ENST00000446349 GPR98Q8WXG9 6306 aa1.66□□□□□ -2.14
PTPN3-204ENST00000446349 USH2AO75445 5202 aa1.66□□□□□ -2.14
PTPN3-204ENST00000446349 KMT2DO14686 5537 aa1.63□□□□□ -2.15
PTPN3-204ENST00000446349 KRTAP4-12Q9BQ66 201 aa1.59□□□□□ -2.15
PTPN3-204ENST00000446349 KRTAP4-2Q9BYR5 136 aa1.59□□□□□ -2.15
PTPN3-204ENST00000446349 MUC5ACP98088 5654 aa1.59□□□□□ -2.15
PTPN3-204ENST00000446349 KRTAP4-4Q9BYR3 166 aa1.56□□□□□ -2.16
PTPN3-204ENST00000446349 AHNAK2Q8IVF2 5795 aa1.49□□□□□ -2.17
PTPN3-204ENST00000446349 KRTAP5-2Q701N4 177 aa1.47□□□□□ -2.17
PTPN3-204ENST00000446349 KRTAP5-8O75690 187 aa1.44□□□□□ -2.18
PTPN3-204ENST00000446349 MUC19Q7Z5P9 8384 aa1.43□□□□□ -2.18
PTPN3-204ENST00000446349 PHGR1C9JFL3 82 aa1.38□□□□□ -2.19
PTPN3-204ENST00000446349 KRTAP5-11Q6L8G4 156 aa1.38□□□□□ -2.19
PTPN3-204ENST00000446349 HMCN1Q96RW7 5635 aa1.34□□□□□ -2.19
PTPN3-204ENST00000446349 KRTAP5-10Q6L8G5 202 aa1.34□□□□□ -2.19
PTPN3-204ENST00000446349 MUC5BQ9HC84 5762 aaPredicted RBP1.33□□□□□ -2.2
PTPN3-204ENST00000446349 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.23□□□□□ -2.21
PTPN3-204ENST00000446349 AHNAKQ09666 5890 aaKnown RBP1.23□□□□□ -2.21
PTPN3-204ENST00000446349 KRTAP5-7Q6L8G8 165 aa1.22□□□□□ -2.21
PTPN3-204ENST00000446349 KRTAP5-1Q6L8H4 278 aa1.22□□□□□ -2.21
PTPN3-204ENST00000446349 KRTAP21-2Q3LI59 83 aa1.15□□□□□ -2.23
PTPN3-204ENST00000446349 KRTAP21-1Q3LI58 79 aa1.08□□□□□ -2.24
PTPN3-204ENST00000446349 MUC16Q8WXI7 14507 aa0.84□□□□□ -2.28
Retrieved 77 of 20,778 RNA–protein pairs in 6.3 ms