RNA–Protein interactions for RNA: ENST00000442510.6

PTPRC-209, Transcript of protein tyrosine phosphatase, receptor type C, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene PTPRC, Length 5,164 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRC-209ENST00000442510 SPRR2FQ96RM1 72 aa1.68□□□□□ -2.14
PTPRC-209ENST00000442510 LRP1BQ9NZR2 4599 aa1.67□□□□□ -2.14
PTPRC-209ENST00000442510 LCE1DQ5T752 114 aa1.67□□□□□ -2.14
PTPRC-209ENST00000442510 PKD1P98161 4303 aa1.67□□□□□ -2.14
PTPRC-209ENST00000442510 ABCA13Q86UQ4 5058 aa1.67□□□□□ -2.14
PTPRC-209ENST00000442510 HERC1Q15751 4861 aa1.67□□□□□ -2.14
PTPRC-209ENST00000442510 HSPG2P98160 4391 aa1.67□□□□□ -2.14
PTPRC-209ENST00000442510 DYNC1H1Q14204 4646 aaKnown RBP1.66□□□□□ -2.14
PTPRC-209ENST00000442510 LCE5AQ5TCM9 118 aa1.66□□□□□ -2.14
PTPRC-209ENST00000442510 KRTAP6-3Q3LI67 103 aa1.66□□□□□ -2.14
PTPRC-209ENST00000442510 LCE1FQ5T754 118 aa1.66□□□□□ -2.14
PTPRC-209ENST00000442510 KRTAP19-8Q3LI54 63 aa1.65□□□□□ -2.15
PTPRC-209ENST00000442510 FAT3Q8TDW7 4589 aa1.64□□□□□ -2.15
PTPRC-209ENST00000442510 RNF213Q63HN8 5207 aa1.64□□□□□ -2.15
PTPRC-209ENST00000442510 MT1LQ93083 61 aa1.62□□□□□ -2.15
PTPRC-209ENST00000442510 LRP1Q07954 4544 aaKnown RBP1.62□□□□□ -2.15
PTPRC-209ENST00000442510 KRTAP9-7A8MTY7 169 aa1.61□□□□□ -2.15
PTPRC-209ENST00000442510 LRP2P98164 4655 aa1.6□□□□□ -2.15
PTPRC-209ENST00000442510 KRTAP4-11Q9BYQ6 195 aa1.58□□□□□ -2.16
PTPRC-209ENST00000442510 KRTAP9-6A8MVA2 160 aa1.58□□□□□ -2.16
PTPRC-209ENST00000442510 KRTAP6-2Q3LI66 62 aa1.57□□□□□ -2.16
PTPRC-209ENST00000442510 MT1BP07438 61 aa1.56□□□□□ -2.16
PTPRC-209ENST00000442510 MUC19Q7Z5P9 8384 aa1.56□□□□□ -2.16
PTPRC-209ENST00000442510 LPAP08519 4548 aa1.56□□□□□ -2.16
PTPRC-209ENST00000442510 SPRR2EP22531 72 aa1.55□□□□□ -2.16
PTPRC-209ENST00000442510 SPRR2BP35325 72 aa1.55□□□□□ -2.16
PTPRC-209ENST00000442510 SPRR2AP35326 72 aa1.55□□□□□ -2.16
PTPRC-209ENST00000442510 MT1AP04731 61 aa1.54□□□□□ -2.16
PTPRC-209ENST00000442510 MUC2Q02817 5179 aa1.54□□□□□ -2.16
PTPRC-209ENST00000442510 MT1EP04732 61 aa1.53□□□□□ -2.16
PTPRC-209ENST00000442510 LCE4AQ5TA78 99 aa1.53□□□□□ -2.16
PTPRC-209ENST00000442510 KRTAP5-4Q6L8H1 288 aa1.53□□□□□ -2.17
PTPRC-209ENST00000442510 HMCN1Q96RW7 5635 aa1.52□□□□□ -2.17
PTPRC-209ENST00000442510 SPRR2DP22532 72 aa1.52□□□□□ -2.17
PTPRC-209ENST00000442510 DSTQ03001 7570 aaKnown RBP1.52□□□□□ -2.17
PTPRC-209ENST00000442510 KRTAP9-3Q9BYQ3 159 aa1.52□□□□□ -2.17
PTPRC-209ENST00000442510 SYNE2Q8WXH0 6885 aaKnown RBP1.49□□□□□ -2.17
PTPRC-209ENST00000442510 HMCN2Q8NDA2 5059 aa1.49□□□□□ -2.17
PTPRC-209ENST00000442510 FAT4Q6V0I7 4981 aa1.45□□□□□ -2.18
PTPRC-209ENST00000442510 MACF1Q9UPN3 7388 aaKnown RBP1.43□□□□□ -2.18
PTPRC-209ENST00000442510 KMT2DO14686 5537 aa1.43□□□□□ -2.18
PTPRC-209ENST00000442510 KRTAP19-3Q7Z4W3 81 aa1.43□□□□□ -2.18
PTPRC-209ENST00000442510 FLGP20930 4061 aaPredicted RBP1.42□□□□□ -2.18
PTPRC-209ENST00000442510 MT1MQ8N339 61 aa1.41□□□□□ -2.18
PTPRC-209ENST00000442510 KRTAP4-3Q9BYR4 195 aa1.4□□□□□ -2.18
PTPRC-209ENST00000442510 KRTAP19-7Q3SYF9 63 aa1.4□□□□□ -2.19
PTPRC-209ENST00000442510 MT4P47944 62 aa1.37□□□□□ -2.19
PTPRC-209ENST00000442510 KRTAP19-2Q3LHN2 52 aa1.36□□□□□ -2.19
PTPRC-209ENST00000442510 KRTAP5-8O75690 187 aa1.36□□□□□ -2.19
PTPRC-209ENST00000442510 USH2AO75445 5202 aa1.36□□□□□ -2.19
PTPRC-209ENST00000442510 LCE1BQ5T7P3 118 aa1.35□□□□□ -2.19
PTPRC-209ENST00000442510 MUC17Q685J3 4493 aa1.34□□□□□ -2.19
PTPRC-209ENST00000442510 SSPOA2VEC9 5147 aa1.34□□□□□ -2.2
PTPRC-209ENST00000442510 KRTAP5-5Q701N2 237 aaPredicted RBP1.33□□□□□ -2.2
PTPRC-209ENST00000442510 KRTAP6-1Q3LI64 71 aa1.31□□□□□ -2.2
PTPRC-209ENST00000442510 GPR98Q8WXG9 6306 aa1.3□□□□□ -2.2
PTPRC-209ENST00000442510 MUC5BQ9HC84 5762 aaPredicted RBP1.29□□□□□ -2.2
PTPRC-209ENST00000442510 MDN1Q9NU22 5596 aa1.29□□□□□ -2.2
PTPRC-209ENST00000442510 KRTAP19-6Q3LI70 58 aa1.26□□□□□ -2.21
PTPRC-209ENST00000442510 NEBP20929 6669 aa1.26□□□□□ -2.21
PTPRC-209ENST00000442510 KRTAP4-4Q9BYR3 166 aa1.25□□□□□ -2.21
PTPRC-209ENST00000442510 KRTAP20-1Q3LI63 56 aa1.24□□□□□ -2.21
PTPRC-209ENST00000442510 FCGBPQ9Y6R7 5405 aaPredicted RBP1.22□□□□□ -2.21
PTPRC-209ENST00000442510 KRTAP5-11Q6L8G4 156 aa1.2□□□□□ -2.22
PTPRC-209ENST00000442510 LCE1CQ5T751 118 aa1.18□□□□□ -2.22
PTPRC-209ENST00000442510 MUC12Q9UKN1 5478 aa1.16□□□□□ -2.22
PTPRC-209ENST00000442510 KRTAP5-1Q6L8H4 278 aa1.1□□□□□ -2.23
PTPRC-209ENST00000442510 AHNAK2Q8IVF2 5795 aa1.01□□□□□ -2.25
PTPRC-209ENST00000442510 KRTAP21-1Q3LI58 79 aa0.95□□□□□ -2.26
PTPRC-209ENST00000442510 KRTAP20-2Q3LI61 65 aa0.94□□□□□ -2.26
PTPRC-209ENST00000442510 KRTAP5-10Q6L8G5 202 aa0.93□□□□□ -2.26
PTPRC-209ENST00000442510 MUC5ACP98088 5654 aa0.91□□□□□ -2.26
PTPRC-209ENST00000442510 AHNAKQ09666 5890 aaKnown RBP0.91□□□□□ -2.26
PTPRC-209ENST00000442510 KRTAP5-7Q6L8G8 165 aa0.72□□□□□ -2.29
PTPRC-209ENST00000442510 PHGR1C9JFL3 82 aa0.67□□□□□ -2.3
PTPRC-209ENST00000442510 KRTAP21-2Q3LI59 83 aa0.65□□□□□ -2.3
PTPRC-209ENST00000442510 MUC16Q8WXI7 14507 aa0.55□□□□□ -2.32
Retrieved 77 of 20,778 RNA–protein pairs in 6.7 ms