RNA–Protein interactions for RNA: ENST00000440048.1

VARS-217, Transcript of valyl-tRNA synthetase, humanhuman

TSL 1 (best)

Gene VARS, Length 804 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-217ENST00000440048 PSPHP1O15172 72 aa8.46□□□□□ -1.06
VARS-217ENST00000440048 Q1T7F1 81 aa8.46□□□□□ -1.06
VARS-217ENST00000440048 SVIPQ8NHG7 77 aa8.45□□□□□ -1.06
VARS-217ENST00000440048 MT1LQ93083 61 aa8.43□□□□□ -1.06
VARS-217ENST00000440048 PP632Q6XCG6 107 aa8.41□□□□□ -1.06
VARS-217ENST00000440048 MT1MQ8N339 61 aa8.36□□□□□ -1.07
VARS-217ENST00000440048 K7ERS5 55 aa8.32□□□□□ -1.08
VARS-217ENST00000440048 KRTAP12-3P60328 96 aa8.25□□□□□ -1.09
VARS-217ENST00000440048 KRTAP25-1Q3LHN0 102 aa8.25□□□□□ -1.09
VARS-217ENST00000440048 KRTAP4-9Q9BYQ8 210 aa8.2□□□□□ -1.1
VARS-217ENST00000440048 A6NED7 52 aa8.17□□□□□ -1.1
VARS-217ENST00000440048 KRTAP4-3Q9BYR4 195 aa8.17□□□□□ -1.1
VARS-217ENST00000440048 GPR98Q8WXG9 6306 aa8.1□□□□□ -1.11
VARS-217ENST00000440048 LCE4AQ5TA78 99 aa8.08□□□□□ -1.12
VARS-217ENST00000440048 LCE1DQ5T752 114 aa8.04□□□□□ -1.12
VARS-217ENST00000440048 KRTAP4-7Q9BYR0 210 aa8.04□□□□□ -1.12
VARS-217ENST00000440048 KRTAP23-1A1A580 65 aa7.95□□□□□ -1.14
VARS-217ENST00000440048 HMCN1Q96RW7 5635 aa7.95□□□□□ -1.14
VARS-217ENST00000440048 MT4P47944 62 aa7.93□□□□□ -1.14
VARS-217ENST00000440048 CDC42SE1Q9NRR8 79 aa7.91□□□□□ -1.14
VARS-217ENST00000440048 KRTAP5-4Q6L8H1 288 aa7.89□□□□□ -1.15
VARS-217ENST00000440048 PRO0628Q9UI54 55 aa7.84□□□□□ -1.15
VARS-217ENST00000440048 ROMO1P60602 79 aa7.8□□□□□ -1.16
VARS-217ENST00000440048 KRTAP19-4Q3LI73 84 aa7.77□□□□□ -1.17
VARS-217ENST00000440048 KRTAP15-1Q3LI76 137 aa7.76□□□□□ -1.17
VARS-217ENST00000440048 KRTAP4-6Q9BYQ5 205 aa7.69□□□□□ -1.18
VARS-217ENST00000440048 AHNAK2Q8IVF2 5795 aa7.68□□□□□ -1.18
VARS-217ENST00000440048 KRTAP5-5Q701N2 237 aaPredicted RBP7.65□□□□□ -1.18
VARS-217ENST00000440048 LCE3CQ5T5A8 94 aa7.61□□□□□ -1.19
VARS-217ENST00000440048 LOC100996750A0A140TA64 210 aa7.6□□□□□ -1.19
VARS-217ENST00000440048 BRK1Q8WUW1 75 aa7.6□□□□□ -1.19
VARS-217ENST00000440048 KRTAP5-10Q6L8G5 202 aa7.5□□□□□ -1.21
VARS-217ENST00000440048 SPRR5A0A1B0GTR4 108 aa7.44□□□□□ -1.22
VARS-217ENST00000440048 KRTAP12-4P60329 112 aa7.43□□□□□ -1.22
VARS-217ENST00000440048 KRTAP20-2Q3LI61 65 aa7.43□□□□□ -1.22
VARS-217ENST00000440048 KRTAP5-3Q6L8H2 238 aa7.32□□□□□ -1.24
VARS-217ENST00000440048 SYNE1Q8NF91 8797 aaKnown RBP7.32□□□□□ -1.24
VARS-217ENST00000440048 PMAIP1Q13794 54 aa7.29□□□□□ -1.24
VARS-217ENST00000440048 KRTAP5-7Q6L8G8 165 aa7.25□□□□□ -1.25
VARS-217ENST00000440048 KRTAP9-6A8MVA2 160 aa7.19□□□□□ -1.26
VARS-217ENST00000440048 KTN1-AS1Q86SY8 53 aa7.19□□□□□ -1.26
VARS-217ENST00000440048 MT1AP04731 61 aa7.17□□□□□ -1.26
VARS-217ENST00000440048 KRTAP6-1Q3LI64 71 aa7.13□□□□□ -1.27
VARS-217ENST00000440048 KRTAP5-2Q701N4 177 aa6.94□□□□□ -1.3
VARS-217ENST00000440048 KRTAP9-4Q9BYQ2 154 aa6.92□□□□□ -1.3
VARS-217ENST00000440048 KRTAP4-11Q9BYQ6 195 aa6.82□□□□□ -1.32
VARS-217ENST00000440048 KRTAP6-2Q3LI66 62 aa6.78□□□□□ -1.32
VARS-217ENST00000440048 KRTAP5-8O75690 187 aa6.56□□□□□ -1.36
VARS-217ENST00000440048 MT3P25713 68 aa6.55□□□□□ -1.36
VARS-217ENST00000440048 PRAC1Q96KF2 57 aa6.54□□□□□ -1.36
VARS-217ENST00000440048 OBSCNQ5VST9 7968 aa6.44□□□□□ -1.38
VARS-217ENST00000440048 MUC5BQ9HC84 5762 aaPredicted RBP6.36□□□□□ -1.39
VARS-217ENST00000440048 AHNAKQ09666 5890 aaKnown RBP6.35□□□□□ -1.39
VARS-217ENST00000440048 MUC5ACP98088 5654 aa6.3□□□□□ -1.4
VARS-217ENST00000440048 KRTAP9-9Q9BYP9 154 aa6.29□□□□□ -1.4
VARS-217ENST00000440048 KRTAP5-1Q6L8H4 278 aa6.19□□□□□ -1.42
VARS-217ENST00000440048 LCE1EQ5T753 118 aa5.97□□□□□ -1.45
VARS-217ENST00000440048 H3BS24 57 aa5.74□□□□□ -1.49
VARS-217ENST00000440048 KRTAP4-2Q9BYR5 136 aa5.64□□□□□ -1.51
VARS-217ENST00000440048 LCE1BQ5T7P3 118 aa5.62□□□□□ -1.51
VARS-217ENST00000440048 NDUFAF8A1L188 74 aa5.55□□□□□ -1.52
VARS-217ENST00000440048 LCE1CQ5T751 118 aa5.55□□□□□ -1.52
VARS-217ENST00000440048 LUZP6Q538Z0 58 aa5.53□□□□□ -1.52
VARS-217ENST00000440048 LCE3DQ9BYE3 92 aa5.51□□□□□ -1.53
VARS-217ENST00000440048 A0A0A0MQY5 61 aa5.24□□□□□ -1.57
VARS-217ENST00000440048 LCE3EQ5T5B0 92 aa5.21□□□□□ -1.58
VARS-217ENST00000440048 KRTAP5-6Q6L8G9 129 aaPredicted RBP5.07□□□□□ -1.6
VARS-217ENST00000440048 KRTAP4-12Q9BQ66 201 aa5.06□□□□□ -1.6
VARS-217ENST00000440048 KRTAP5-11Q6L8G4 156 aa5.01□□□□□ -1.61
VARS-217ENST00000440048 LCE1FQ5T754 118 aa4.92□□□□□ -1.62
VARS-217ENST00000440048 INE1O15225 51 aa4.87□□□□□ -1.63
VARS-217ENST00000440048 KRTAP21-2Q3LI59 83 aa4.69□□□□□ -1.66
VARS-217ENST00000440048 PHGR1C9JFL3 82 aa4.37□□□□□ -1.71
VARS-217ENST00000440048 KRTAP4-4Q9BYR3 166 aa4.29□□□□□ -1.72
VARS-217ENST00000440048 PRM1P04553 51 aa4.01□□□□□ -1.77
VARS-217ENST00000440048 MUC19Q7Z5P9 8384 aa3.99□□□□□ -1.77
VARS-217ENST00000440048 KRTAP21-1Q3LI58 79 aa3.36□□□□□ -1.87
VARS-217ENST00000440048 MUC16Q8WXI7 14507 aa2.83□□□□□ -1.96
Retrieved 78 of 20,778 RNA–protein pairs in 11.9 ms