RNA–Protein interactions for RNA: ENST00000414174.1

SF3B1-203, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 4

Gene SF3B1, Length 593 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-203ENST00000414174 SMR3BP02814 79 aaPredicted RBP0.98□□□□□ -2.25
SF3B1-203ENST00000414174 PLECQ15149 4684 aaKnown RBP0.98□□□□□ -2.25
SF3B1-203ENST00000414174 HECTD4Q9Y4D8 3996 aa0.97□□□□□ -2.25
SF3B1-203ENST00000414174 DEFB4AO15263 64 aa0.97□□□□□ -2.25
SF3B1-203ENST00000414174 DNAH10Q8IVF4 4471 aa0.96□□□□□ -2.26
SF3B1-203ENST00000414174 FRAS1Q86XX4 4008 aa0.96□□□□□ -2.26
SF3B1-203ENST00000414174 HUWE1Q7Z6Z7 4374 aaKnown RBP0.96□□□□□ -2.26
SF3B1-203ENST00000414174 PKHD1L1Q86WI1 4243 aa0.95□□□□□ -2.26
SF3B1-203ENST00000414174 DYNC1H1Q14204 4646 aaKnown RBP0.95□□□□□ -2.26
SF3B1-203ENST00000414174 KRTAP19-5Q3LI72 72 aa0.94□□□□□ -2.26
SF3B1-203ENST00000414174 HSPG2P98160 4391 aa0.94□□□□□ -2.26
SF3B1-203ENST00000414174 HMCN2Q8NDA2 5059 aa0.93□□□□□ -2.26
SF3B1-203ENST00000414174 PKHD1P08F94 4074 aa0.92□□□□□ -2.26
SF3B1-203ENST00000414174 FAT2Q9NYQ8 4349 aa0.92□□□□□ -2.26
SF3B1-203ENST00000414174 APOBP04114 4563 aaKnown RBP0.92□□□□□ -2.26
SF3B1-203ENST00000414174 DNAH2Q9P225 4427 aa0.92□□□□□ -2.26
SF3B1-203ENST00000414174 DNAH5Q8TE73 4624 aa0.92□□□□□ -2.26
SF3B1-203ENST00000414174 LRP1BQ9NZR2 4599 aa0.92□□□□□ -2.26
SF3B1-203ENST00000414174 DNAH17Q9UFH2 4485 aa0.91□□□□□ -2.26
SF3B1-203ENST00000414174 MT1AP04731 61 aa0.91□□□□□ -2.26
SF3B1-203ENST00000414174 DNAH6Q9C0G6 4158 aa0.91□□□□□ -2.26
SF3B1-203ENST00000414174 KRTAP19-3Q7Z4W3 81 aa0.9□□□□□ -2.27
SF3B1-203ENST00000414174 MUC2Q02817 5179 aa0.9□□□□□ -2.27
SF3B1-203ENST00000414174 MT1HL1P0DM35 61 aa0.89□□□□□ -2.27
SF3B1-203ENST00000414174 SYNE1Q8NF91 8797 aaKnown RBP0.89□□□□□ -2.27
SF3B1-203ENST00000414174 PKD1P98161 4303 aa0.89□□□□□ -2.27
SF3B1-203ENST00000414174 FAT4Q6V0I7 4981 aa0.88□□□□□ -2.27
SF3B1-203ENST00000414174 LRP2P98164 4655 aa0.88□□□□□ -2.27
SF3B1-203ENST00000414174 FAT1Q14517 4588 aa0.88□□□□□ -2.27
SF3B1-203ENST00000414174 RNF213Q63HN8 5207 aa0.88□□□□□ -2.27
SF3B1-203ENST00000414174 FAT3Q8TDW7 4589 aa0.88□□□□□ -2.27
SF3B1-203ENST00000414174 FLGP20930 4061 aaPredicted RBP0.85□□□□□ -2.27
SF3B1-203ENST00000414174 SPRR2DP22532 72 aa0.85□□□□□ -2.27
SF3B1-203ENST00000414174 SPRR2BP35325 72 aa0.85□□□□□ -2.27
SF3B1-203ENST00000414174 LRP1Q07954 4544 aaKnown RBP0.84□□□□□ -2.27
SF3B1-203ENST00000414174 SPRR2AP35326 72 aa0.82□□□□□ -2.28
SF3B1-203ENST00000414174 KRTAP6-2Q3LI66 62 aa0.82□□□□□ -2.28
SF3B1-203ENST00000414174 FSIP2Q5CZC0 6907 aa0.8□□□□□ -2.28
SF3B1-203ENST00000414174 LPAP08519 4548 aa0.8□□□□□ -2.28
SF3B1-203ENST00000414174 KRTAP21-1Q3LI58 79 aa0.8□□□□□ -2.28
SF3B1-203ENST00000414174 SSPOA2VEC9 5147 aa0.79□□□□□ -2.28
SF3B1-203ENST00000414174 SPRR2FQ96RM1 72 aa0.78□□□□□ -2.28
SF3B1-203ENST00000414174 MT1EP04732 61 aa0.76□□□□□ -2.29
SF3B1-203ENST00000414174 MT1HP80294 61 aa0.76□□□□□ -2.29
SF3B1-203ENST00000414174 KRTAP19-2Q3LHN2 52 aa0.76□□□□□ -2.29
SF3B1-203ENST00000414174 KRTAP20-1Q3LI63 56 aa0.76□□□□□ -2.29
SF3B1-203ENST00000414174 SPRR2GQ9BYE4 73 aa0.75□□□□□ -2.29
SF3B1-203ENST00000414174 SPRR2EP22531 72 aa0.74□□□□□ -2.29
SF3B1-203ENST00000414174 KRTAP19-6Q3LI70 58 aa0.74□□□□□ -2.29
SF3B1-203ENST00000414174 MUC17Q685J3 4493 aa0.74□□□□□ -2.29
SF3B1-203ENST00000414174 USH2AO75445 5202 aa0.73□□□□□ -2.29
SF3B1-203ENST00000414174 MACF1Q9UPN3 7388 aaKnown RBP0.73□□□□□ -2.29
SF3B1-203ENST00000414174 MT1LQ93083 61 aa0.72□□□□□ -2.29
SF3B1-203ENST00000414174 NEBP20929 6669 aa0.69□□□□□ -2.3
SF3B1-203ENST00000414174 SYNE2Q8WXH0 6885 aaKnown RBP0.69□□□□□ -2.3
SF3B1-203ENST00000414174 KMT2DO14686 5537 aa0.67□□□□□ -2.3
SF3B1-203ENST00000414174 MT2AP02795 61 aa0.67□□□□□ -2.3
SF3B1-203ENST00000414174 AHNAK2Q8IVF2 5795 aa0.67□□□□□ -2.3
SF3B1-203ENST00000414174 MT1FP04733 61 aa0.66□□□□□ -2.3
SF3B1-203ENST00000414174 MUC12Q9UKN1 5478 aa0.66□□□□□ -2.3
SF3B1-203ENST00000414174 MT1XP80297 61 aa0.65□□□□□ -2.31
SF3B1-203ENST00000414174 KRTAP19-8Q3LI54 63 aa0.65□□□□□ -2.31
SF3B1-203ENST00000414174 GPR98Q8WXG9 6306 aa0.64□□□□□ -2.31
SF3B1-203ENST00000414174 KRTAP5-10Q6L8G5 202 aa0.64□□□□□ -2.31
SF3B1-203ENST00000414174 AHNAKQ09666 5890 aaKnown RBP0.62□□□□□ -2.31
SF3B1-203ENST00000414174 MDN1Q9NU22 5596 aa0.61□□□□□ -2.31
SF3B1-203ENST00000414174 MUC5BQ9HC84 5762 aaPredicted RBP0.6□□□□□ -2.31
SF3B1-203ENST00000414174 MT1BP07438 61 aa0.58□□□□□ -2.32
SF3B1-203ENST00000414174 KRTAP19-7Q3SYF9 63 aa0.58□□□□□ -2.32
SF3B1-203ENST00000414174 MUC16Q8WXI7 14507 aa0.58□□□□□ -2.32
SF3B1-203ENST00000414174 DSTQ03001 7570 aaKnown RBP0.56□□□□□ -2.32
SF3B1-203ENST00000414174 MT1GP13640 62 aa0.53□□□□□ -2.32
SF3B1-203ENST00000414174 MT4P47944 62 aa0.5□□□□□ -2.33
SF3B1-203ENST00000414174 KRTAP20-2Q3LI61 65 aa0.49□□□□□ -2.33
SF3B1-203ENST00000414174 MT1MQ8N339 61 aa0.49□□□□□ -2.33
SF3B1-203ENST00000414174 MUC5ACP98088 5654 aa0.48□□□□□ -2.33
SF3B1-203ENST00000414174 KRTAP6-1Q3LI64 71 aa0.48□□□□□ -2.33
SF3B1-203ENST00000414174 PHGR1C9JFL3 82 aa0.35□□□□□ -2.35
Retrieved 78 of 20,778 RNA–protein pairs in 10.8 ms