RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 KRTAP4-3Q9BYR4 195 aa7.52□□□□□ -1.21
CCDC28B-201ENST00000373602 PCP4P48539 62 aa7.51□□□□□ -1.21
CCDC28B-201ENST00000373602 MT4P47944 62 aa7.47□□□□□ -1.21
CCDC28B-201ENST00000373602 TMEM258P61165 79 aa7.45□□□□□ -1.22
CCDC28B-201ENST00000373602 UQCR11O14957 56 aa7.44□□□□□ -1.22
CCDC28B-201ENST00000373602 KRTAP5-4Q6L8H1 288 aa7.42□□□□□ -1.22
CCDC28B-201ENST00000373602 KRTAP12-3P60328 96 aa7.41□□□□□ -1.22
CCDC28B-201ENST00000373602 HMCN1Q96RW7 5635 aa7.34□□□□□ -1.23
CCDC28B-201ENST00000373602 KRTAP4-7Q9BYR0 210 aa7.33□□□□□ -1.24
CCDC28B-201ENST00000373602 MIR22HGQ0VDD5 57 aa7.26□□□□□ -1.25
CCDC28B-201ENST00000373602 KRTAP4-6Q9BYQ5 205 aa7.26□□□□□ -1.25
CCDC28B-201ENST00000373602 KRTAP25-1Q3LHN0 102 aa7.24□□□□□ -1.25
CCDC28B-201ENST00000373602 K7ERS5 55 aa7.14□□□□□ -1.27
CCDC28B-201ENST00000373602 AHNAK2Q8IVF2 5795 aa7.11□□□□□ -1.27
CCDC28B-201ENST00000373602 KRTAP5-10Q6L8G5 202 aa7.09□□□□□ -1.27
CCDC28B-201ENST00000373602 KRTAP5-5Q701N2 237 aaPredicted RBP7.09□□□□□ -1.27
CCDC28B-201ENST00000373602 V9GYY9 64 aa7.08□□□□□ -1.28
CCDC28B-201ENST00000373602 PSPHP1O15172 72 aa7.06□□□□□ -1.28
CCDC28B-201ENST00000373602 Q1T7F1 81 aa7.03□□□□□ -1.28
CCDC28B-201ENST00000373602 KRTAP19-4Q3LI73 84 aa7.02□□□□□ -1.29
CCDC28B-201ENST00000373602 KRTAP20-2Q3LI61 65 aa6.99□□□□□ -1.29
CCDC28B-201ENST00000373602 KRTAP23-1A1A580 65 aa6.98□□□□□ -1.29
CCDC28B-201ENST00000373602 SPRR5A0A1B0GTR4 108 aa6.96□□□□□ -1.3
CCDC28B-201ENST00000373602 LOC100996750A0A140TA64 210 aa6.95□□□□□ -1.3
CCDC28B-201ENST00000373602 RPS28P62857 69 aaKnown RBP6.92□□□□□ -1.3
CCDC28B-201ENST00000373602 KRTAP12-4P60329 112 aa6.91□□□□□ -1.3
CCDC28B-201ENST00000373602 KRTAP5-3Q6L8H2 238 aa6.91□□□□□ -1.3
CCDC28B-201ENST00000373602 KRTAP15-1Q3LI76 137 aa6.9□□□□□ -1.3
CCDC28B-201ENST00000373602 SYNE1Q8NF91 8797 aaKnown RBP6.83□□□□□ -1.32
CCDC28B-201ENST00000373602 LCE3CQ5T5A8 94 aa6.82□□□□□ -1.32
CCDC28B-201ENST00000373602 KRTAP5-7Q6L8G8 165 aa6.82□□□□□ -1.32
CCDC28B-201ENST00000373602 A6NED7 52 aa6.81□□□□□ -1.32
CCDC28B-201ENST00000373602 CDC42SE1Q9NRR8 79 aa6.75□□□□□ -1.33
CCDC28B-201ENST00000373602 ROMO1P60602 79 aa6.64□□□□□ -1.35
CCDC28B-201ENST00000373602 SVIPQ8NHG7 77 aa6.61□□□□□ -1.35
CCDC28B-201ENST00000373602 MT1AP04731 61 aa6.58□□□□□ -1.36
CCDC28B-201ENST00000373602 KRTAP6-1Q3LI64 71 aa6.53□□□□□ -1.36
CCDC28B-201ENST00000373602 KRTAP5-2Q701N4 177 aa6.49□□□□□ -1.37
CCDC28B-201ENST00000373602 KRTAP9-6A8MVA2 160 aa6.44□□□□□ -1.38
CCDC28B-201ENST00000373602 KRTAP4-11Q9BYQ6 195 aa6.4□□□□□ -1.38
CCDC28B-201ENST00000373602 KRTAP9-4Q9BYQ2 154 aa6.36□□□□□ -1.39
CCDC28B-201ENST00000373602 KRTAP6-2Q3LI66 62 aa6.26□□□□□ -1.41
CCDC28B-201ENST00000373602 KRTAP5-8O75690 187 aa6.2□□□□□ -1.42
CCDC28B-201ENST00000373602 PRO0628Q9UI54 55 aa6.17□□□□□ -1.42
CCDC28B-201ENST00000373602 BRK1Q8WUW1 75 aa6.14□□□□□ -1.43
CCDC28B-201ENST00000373602 MT3P25713 68 aa6.02□□□□□ -1.45
CCDC28B-201ENST00000373602 OBSCNQ5VST9 7968 aa5.97□□□□□ -1.45
CCDC28B-201ENST00000373602 KRTAP9-9Q9BYP9 154 aa5.88□□□□□ -1.47
CCDC28B-201ENST00000373602 PMAIP1Q13794 54 aa5.87□□□□□ -1.47
CCDC28B-201ENST00000373602 MUC5ACP98088 5654 aa5.86□□□□□ -1.47
CCDC28B-201ENST00000373602 AHNAKQ09666 5890 aaKnown RBP5.84□□□□□ -1.47
CCDC28B-201ENST00000373602 MUC5BQ9HC84 5762 aaPredicted RBP5.83□□□□□ -1.48
CCDC28B-201ENST00000373602 KRTAP5-1Q6L8H4 278 aa5.83□□□□□ -1.48
CCDC28B-201ENST00000373602 H3BS24 57 aa5.74□□□□□ -1.49
CCDC28B-201ENST00000373602 KTN1-AS1Q86SY8 53 aa5.68□□□□□ -1.5
CCDC28B-201ENST00000373602 LCE1EQ5T753 118 aa5.55□□□□□ -1.52
CCDC28B-201ENST00000373602 KRTAP4-2Q9BYR5 136 aa5.26□□□□□ -1.57
CCDC28B-201ENST00000373602 PRAC1Q96KF2 57 aa5.23□□□□□ -1.57
CCDC28B-201ENST00000373602 LCE1BQ5T7P3 118 aa5.21□□□□□ -1.58
CCDC28B-201ENST00000373602 KRTAP4-12Q9BQ66 201 aa5.19□□□□□ -1.58
CCDC28B-201ENST00000373602 LCE1CQ5T751 118 aa5.15□□□□□ -1.59
CCDC28B-201ENST00000373602 LCE3DQ9BYE3 92 aa4.89□□□□□ -1.63
CCDC28B-201ENST00000373602 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.69□□□□□ -1.66
CCDC28B-201ENST00000373602 KRTAP5-11Q6L8G4 156 aa4.68□□□□□ -1.66
CCDC28B-201ENST00000373602 LUZP6Q538Z0 58 aa4.65□□□□□ -1.67
CCDC28B-201ENST00000373602 LCE3EQ5T5B0 92 aa4.59□□□□□ -1.67
CCDC28B-201ENST00000373602 LCE1FQ5T754 118 aa4.57□□□□□ -1.68
CCDC28B-201ENST00000373602 A0A0A0MQY5 61 aa4.52□□□□□ -1.69
CCDC28B-201ENST00000373602 NDUFAF8A1L188 74 aa4.34□□□□□ -1.71
CCDC28B-201ENST00000373602 KRTAP21-2Q3LI59 83 aa4.32□□□□□ -1.72
CCDC28B-201ENST00000373602 PHGR1C9JFL3 82 aa4.12□□□□□ -1.75
CCDC28B-201ENST00000373602 KRTAP4-4Q9BYR3 166 aa3.95□□□□□ -1.78
CCDC28B-201ENST00000373602 INE1O15225 51 aa3.85□□□□□ -1.79
CCDC28B-201ENST00000373602 MUC19Q7Z5P9 8384 aa3.73□□□□□ -1.81
CCDC28B-201ENST00000373602 PRM1P04553 51 aa3.39□□□□□ -1.87
CCDC28B-201ENST00000373602 KRTAP21-1Q3LI58 79 aa3.13□□□□□ -1.91
CCDC28B-201ENST00000373602 MUC16Q8WXI7 14507 aa2.65□□□□□ -1.99
Retrieved 77 of 20,778 RNA–protein pairs in 10 ms