RNA–Protein interactions for RNA: ENST00000343200.9

VCAN-203, Transcript of versican, humanhuman

TSL 1 (best) BASIC

Gene VCAN, Length 9,455 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-203ENST00000343200 LOC100996750A0A140TA64 210 aa1.7□□□□□ -2.14
VCAN-203ENST00000343200 KRTAP9-7A8MTY7 169 aa1.68□□□□□ -2.14
VCAN-203ENST00000343200 KRTAP9-3Q9BYQ3 159 aa1.68□□□□□ -2.14
VCAN-203ENST00000343200 HERC2O95714 4834 aa1.68□□□□□ -2.14
VCAN-203ENST00000343200 RYR3Q15413 4870 aa1.68□□□□□ -2.14
VCAN-203ENST00000343200 PCLOQ9Y6V0 5065 aa1.67□□□□□ -2.14
VCAN-203ENST00000343200 KIAA1109Q2LD37 5005 aa1.67□□□□□ -2.14
VCAN-203ENST00000343200 ABCA13Q86UQ4 5058 aa1.67□□□□□ -2.14
VCAN-203ENST00000343200 SYNE2Q8WXH0 6885 aaKnown RBP1.66□□□□□ -2.14
VCAN-203ENST00000343200 FSIP2Q5CZC0 6907 aa1.65□□□□□ -2.14
VCAN-203ENST00000343200 KMT2CQ8NEZ4 4911 aaKnown RBP1.65□□□□□ -2.15
VCAN-203ENST00000343200 KRTAP2-2Q9BYT5 123 aa1.63□□□□□ -2.15
VCAN-203ENST00000343200 KRTAP4-9Q9BYQ8 210 aa1.63□□□□□ -2.15
VCAN-203ENST00000343200 KRTAP19-6Q3LI70 58 aa1.63□□□□□ -2.15
VCAN-203ENST00000343200 KRTAP20-1Q3LI63 56 aa1.62□□□□□ -2.15
VCAN-203ENST00000343200 LRP2P98164 4655 aa1.62□□□□□ -2.15
VCAN-203ENST00000343200 HERC1Q15751 4861 aa1.61□□□□□ -2.15
VCAN-203ENST00000343200 EPPK1P58107 5090 aaKnown RBP1.61□□□□□ -2.15
VCAN-203ENST00000343200 SYNE1Q8NF91 8797 aaKnown RBP1.61□□□□□ -2.15
VCAN-203ENST00000343200 LCE1AQ5T7P2 110 aa1.6□□□□□ -2.15
VCAN-203ENST00000343200 LCE5AQ5TCM9 118 aa1.59□□□□□ -2.16
VCAN-203ENST00000343200 UBR4Q5T4S7 5183 aa1.57□□□□□ -2.16
VCAN-203ENST00000343200 KRTAP4-3Q9BYR4 195 aa1.56□□□□□ -2.16
VCAN-203ENST00000343200 LCE4AQ5TA78 99 aa1.55□□□□□ -2.16
VCAN-203ENST00000343200 LCE1CQ5T751 118 aa1.54□□□□□ -2.16
VCAN-203ENST00000343200 LCE1EQ5T753 118 aa1.54□□□□□ -2.16
VCAN-203ENST00000343200 LCE1FQ5T754 118 aa1.54□□□□□ -2.16
VCAN-203ENST00000343200 RNF213Q63HN8 5207 aa1.54□□□□□ -2.16
VCAN-203ENST00000343200 KRTAP19-7Q3SYF9 63 aa1.52□□□□□ -2.17
VCAN-203ENST00000343200 KRTAP9-1A8MXZ3 250 aaPredicted RBP1.51□□□□□ -2.17
VCAN-203ENST00000343200 DSTQ03001 7570 aaKnown RBP1.51□□□□□ -2.17
VCAN-203ENST00000343200 KRTAP9-6A8MVA2 160 aa1.51□□□□□ -2.17
VCAN-203ENST00000343200 KRTAP6-1Q3LI64 71 aa1.5□□□□□ -2.17
VCAN-203ENST00000343200 HMCN2Q8NDA2 5059 aa1.49□□□□□ -2.17
VCAN-203ENST00000343200 KRTAP9-4Q9BYQ2 154 aa1.48□□□□□ -2.17
VCAN-203ENST00000343200 KRTAP19-2Q3LHN2 52 aa1.45□□□□□ -2.18
VCAN-203ENST00000343200 MACF1Q9UPN3 7388 aaKnown RBP1.45□□□□□ -2.18
VCAN-203ENST00000343200 KRTAP6-3Q3LI67 103 aa1.44□□□□□ -2.18
VCAN-203ENST00000343200 LCE2AQ5TA79 106 aaPredicted RBP1.44□□□□□ -2.18
VCAN-203ENST00000343200 KRTAP4-11Q9BYQ6 195 aa1.4□□□□□ -2.19
VCAN-203ENST00000343200 FAT4Q6V0I7 4981 aa1.36□□□□□ -2.19
VCAN-203ENST00000343200 USH2AO75445 5202 aa1.36□□□□□ -2.19
VCAN-203ENST00000343200 MUC19Q7Z5P9 8384 aa1.35□□□□□ -2.19
VCAN-203ENST00000343200 KRTAP9-9Q9BYP9 154 aa1.35□□□□□ -2.19
VCAN-203ENST00000343200 KRTAP4-6Q9BYQ5 205 aa1.28□□□□□ -2.21
VCAN-203ENST00000343200 MUC2Q02817 5179 aa1.25□□□□□ -2.21
VCAN-203ENST00000343200 KMT2DO14686 5537 aa1.24□□□□□ -2.21
VCAN-203ENST00000343200 FCGBPQ9Y6R7 5405 aaPredicted RBP1.23□□□□□ -2.21
VCAN-203ENST00000343200 KRTAP20-2Q3LI61 65 aa1.22□□□□□ -2.21
VCAN-203ENST00000343200 KRTAP4-12Q9BQ66 201 aa1.21□□□□□ -2.22
VCAN-203ENST00000343200 KRTAP4-2Q9BYR5 136 aa1.21□□□□□ -2.22
VCAN-203ENST00000343200 KRTAP5-5Q701N2 237 aaPredicted RBP1.21□□□□□ -2.22
VCAN-203ENST00000343200 SSPOA2VEC9 5147 aa1.2□□□□□ -2.22
VCAN-203ENST00000343200 KRTAP5-9P26371 169 aa1.19□□□□□ -2.22
VCAN-203ENST00000343200 KRTAP4-4Q9BYR3 166 aa1.15□□□□□ -2.22
VCAN-203ENST00000343200 MDN1Q9NU22 5596 aa1.13□□□□□ -2.23
VCAN-203ENST00000343200 KRTAP5-4Q6L8H1 288 aa1.13□□□□□ -2.23
VCAN-203ENST00000343200 NEBP20929 6669 aa1.12□□□□□ -2.23
VCAN-203ENST00000343200 KRTAP5-2Q701N4 177 aa1.1□□□□□ -2.23
VCAN-203ENST00000343200 MUC5BQ9HC84 5762 aaPredicted RBP1.08□□□□□ -2.24
VCAN-203ENST00000343200 MUC12Q9UKN1 5478 aa1.05□□□□□ -2.24
VCAN-203ENST00000343200 MUC5ACP98088 5654 aa1.02□□□□□ -2.25
VCAN-203ENST00000343200 KRTAP5-3Q6L8H2 238 aa0.99□□□□□ -2.25
VCAN-203ENST00000343200 AHNAK2Q8IVF2 5795 aa0.98□□□□□ -2.25
VCAN-203ENST00000343200 GPR98Q8WXG9 6306 aa0.97□□□□□ -2.25
VCAN-203ENST00000343200 HMCN1Q96RW7 5635 aa0.96□□□□□ -2.26
VCAN-203ENST00000343200 PHGR1C9JFL3 82 aa0.95□□□□□ -2.26
VCAN-203ENST00000343200 KRTAP5-10Q6L8G5 202 aa0.94□□□□□ -2.26
VCAN-203ENST00000343200 KRTAP5-8O75690 187 aa0.9□□□□□ -2.27
VCAN-203ENST00000343200 AHNAKQ09666 5890 aaKnown RBP0.88□□□□□ -2.27
VCAN-203ENST00000343200 KRTAP5-11Q6L8G4 156 aa0.84□□□□□ -2.28
VCAN-203ENST00000343200 KRTAP21-1Q3LI58 79 aa0.83□□□□□ -2.28
VCAN-203ENST00000343200 KRTAP5-7Q6L8G8 165 aa0.77□□□□□ -2.29
VCAN-203ENST00000343200 KRTAP5-1Q6L8H4 278 aa0.76□□□□□ -2.29
VCAN-203ENST00000343200 KRTAP5-6Q6L8G9 129 aaPredicted RBP0.76□□□□□ -2.29
VCAN-203ENST00000343200 KRTAP21-2Q3LI59 83 aa0.71□□□□□ -2.3
VCAN-203ENST00000343200 MUC16Q8WXI7 14507 aa0.67□□□□□ -2.3
Retrieved 77 of 20,778 RNA–protein pairs in 1216.9 ms