RNA–Protein interactions for RNA: ENST00000342988.7

SMAD4-201, Transcript of SMAD family member 4, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SMAD4, Length 8,769 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-201ENST00000342988 MYCBP2O75592 4640 aa4.73□□□□□ -1.65
SMAD4-201ENST00000342988 FAT3Q8TDW7 4589 aa4.71□□□□□ -1.66
SMAD4-201ENST00000342988 RYR3Q15413 4870 aa4.69□□□□□ -1.66
SMAD4-201ENST00000342988 KRTAP4-3Q9BYR4 195 aa4.65□□□□□ -1.66
SMAD4-201ENST00000342988 KRTAP4-9Q9BYQ8 210 aa4.64□□□□□ -1.67
SMAD4-201ENST00000342988 LCE4AQ5TA78 99 aa4.64□□□□□ -1.67
SMAD4-201ENST00000342988 KRTAP9-2Q9BYQ4 174 aa4.63□□□□□ -1.67
SMAD4-201ENST00000342988 HERC1Q15751 4861 aa4.61□□□□□ -1.67
SMAD4-201ENST00000342988 RYR2Q92736 4967 aa4.56□□□□□ -1.68
SMAD4-201ENST00000342988 SYNE2Q8WXH0 6885 aaKnown RBP4.53□□□□□ -1.68
SMAD4-201ENST00000342988 MUC17Q685J3 4493 aa4.52□□□□□ -1.69
SMAD4-201ENST00000342988 KRTAP9-4Q9BYQ2 154 aa4.52□□□□□ -1.69
SMAD4-201ENST00000342988 KRTAP9-9Q9BYP9 154 aa4.45□□□□□ -1.7
SMAD4-201ENST00000342988 KRTAP2-2Q9BYT5 123 aa4.45□□□□□ -1.7
SMAD4-201ENST00000342988 HERC2O95714 4834 aa4.4□□□□□ -1.71
SMAD4-201ENST00000342988 HYDINQ4G0P3 5121 aa4.4□□□□□ -1.71
SMAD4-201ENST00000342988 LPAP08519 4548 aa4.38□□□□□ -1.71
SMAD4-201ENST00000342988 KRTAP9-6A0A140TA67 174 aa4.37□□□□□ -1.71
SMAD4-201ENST00000342988 KRTAP6-1Q3LI64 71 aa4.37□□□□□ -1.71
SMAD4-201ENST00000342988 KRTAP19-7Q3SYF9 63 aa4.36□□□□□ -1.71
SMAD4-201ENST00000342988 LRP2P98164 4655 aa4.35□□□□□ -1.71
SMAD4-201ENST00000342988 BIRC6Q9NR09 4857 aa4.32□□□□□ -1.72
SMAD4-201ENST00000342988 LCE2AQ5TA79 106 aaPredicted RBP4.3□□□□□ -1.72
SMAD4-201ENST00000342988 ABCA13Q86UQ4 5058 aa4.29□□□□□ -1.72
SMAD4-201ENST00000342988 KRTAP9-7A8MTY7 169 aa4.29□□□□□ -1.72
SMAD4-201ENST00000342988 KRTAP6-3Q3LI67 103 aa4.21□□□□□ -1.74
SMAD4-201ENST00000342988 KMT2CQ8NEZ4 4911 aaKnown RBP4.19□□□□□ -1.74
SMAD4-201ENST00000342988 KRTAP19-2Q3LHN2 52 aa4.14□□□□□ -1.75
SMAD4-201ENST00000342988 PCLOQ9Y6V0 5065 aa4.12□□□□□ -1.75
SMAD4-201ENST00000342988 EPPK1P58107 5090 aaKnown RBP4.06□□□□□ -1.76
SMAD4-201ENST00000342988 KRTAP4-11Q9BYQ6 195 aa4.01□□□□□ -1.77
SMAD4-201ENST00000342988 SYNE1Q8NF91 8797 aaKnown RBP4.01□□□□□ -1.77
SMAD4-201ENST00000342988 KRTAP20-2Q3LI61 65 aa3.99□□□□□ -1.77
SMAD4-201ENST00000342988 FAT4Q6V0I7 4981 aa3.92□□□□□ -1.78
SMAD4-201ENST00000342988 KRTAP9-6A8MVA2 160 aa3.92□□□□□ -1.78
SMAD4-201ENST00000342988 UBR4Q5T4S7 5183 aa3.92□□□□□ -1.78
SMAD4-201ENST00000342988 FSIP2Q5CZC0 6907 aa3.88□□□□□ -1.79
SMAD4-201ENST00000342988 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.86□□□□□ -1.79
SMAD4-201ENST00000342988 HMCN2Q8NDA2 5059 aa3.83□□□□□ -1.8
SMAD4-201ENST00000342988 RNF213Q63HN8 5207 aa3.79□□□□□ -1.8
SMAD4-201ENST00000342988 OBSCNQ5VST9 7968 aa3.78□□□□□ -1.81
SMAD4-201ENST00000342988 MUC2Q02817 5179 aa3.7□□□□□ -1.82
SMAD4-201ENST00000342988 KRTAP4-4Q9BYR3 166 aa3.58□□□□□ -1.84
SMAD4-201ENST00000342988 KRTAP4-6Q9BYQ5 205 aa3.46□□□□□ -1.86
SMAD4-201ENST00000342988 FCGBPQ9Y6R7 5405 aaPredicted RBP3.45□□□□□ -1.86
SMAD4-201ENST00000342988 KRTAP4-12Q9BQ66 201 aa3.43□□□□□ -1.86
SMAD4-201ENST00000342988 KRTAP4-2Q9BYR5 136 aa3.43□□□□□ -1.86
SMAD4-201ENST00000342988 USH2AO75445 5202 aa3.42□□□□□ -1.86
SMAD4-201ENST00000342988 DSTQ03001 7570 aaKnown RBP3.26□□□□□ -1.89
SMAD4-201ENST00000342988 KRTAP5-4Q6L8H1 288 aa3.24□□□□□ -1.89
SMAD4-201ENST00000342988 KMT2DO14686 5537 aa3.21□□□□□ -1.9
SMAD4-201ENST00000342988 KRTAP5-9P26371 169 aa3.18□□□□□ -1.9
SMAD4-201ENST00000342988 SSPOA2VEC9 5147 aa3.11□□□□□ -1.91
SMAD4-201ENST00000342988 MACF1Q9UPN3 7388 aaKnown RBP3.09□□□□□ -1.92
SMAD4-201ENST00000342988 KRTAP5-5Q701N2 237 aaPredicted RBP3.01□□□□□ -1.93
SMAD4-201ENST00000342988 MUC19Q7Z5P9 8384 aa3□□□□□ -1.93
SMAD4-201ENST00000342988 MUC12Q9UKN1 5478 aa2.98□□□□□ -1.93
SMAD4-201ENST00000342988 NEBP20929 6669 aa2.87□□□□□ -1.95
SMAD4-201ENST00000342988 MDN1Q9NU22 5596 aa2.8□□□□□ -1.96
SMAD4-201ENST00000342988 PHGR1C9JFL3 82 aa2.78□□□□□ -1.96
SMAD4-201ENST00000342988 KRTAP5-3Q6L8H2 238 aa2.76□□□□□ -1.97
SMAD4-201ENST00000342988 MUC5ACP98088 5654 aa2.64□□□□□ -1.99
SMAD4-201ENST00000342988 KRTAP5-10Q6L8G5 202 aa2.48□□□□□ -2.01
SMAD4-201ENST00000342988 GPR98Q8WXG9 6306 aa2.45□□□□□ -2.02
SMAD4-201ENST00000342988 HMCN1Q96RW7 5635 aa2.39□□□□□ -2.03
SMAD4-201ENST00000342988 KRTAP5-2Q701N4 177 aa2.37□□□□□ -2.03
SMAD4-201ENST00000342988 KRTAP5-8O75690 187 aa2.31□□□□□ -2.04
SMAD4-201ENST00000342988 MUC5BQ9HC84 5762 aaPredicted RBP2.31□□□□□ -2.04
SMAD4-201ENST00000342988 KRTAP21-1Q3LI58 79 aa2.29□□□□□ -2.04
SMAD4-201ENST00000342988 KRTAP5-11Q6L8G4 156 aa2.21□□□□□ -2.05
SMAD4-201ENST00000342988 KRTAP5-1Q6L8H4 278 aa2.13□□□□□ -2.07
SMAD4-201ENST00000342988 AHNAK2Q8IVF2 5795 aa2.01□□□□□ -2.09
SMAD4-201ENST00000342988 KRTAP21-2Q3LI59 83 aa1.95□□□□□ -2.1
SMAD4-201ENST00000342988 MUC16Q8WXI7 14507 aa1.84□□□□□ -2.11
SMAD4-201ENST00000342988 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.74□□□□□ -2.13
SMAD4-201ENST00000342988 AHNAKQ09666 5890 aaKnown RBP1.71□□□□□ -2.14
SMAD4-201ENST00000342988 KRTAP5-7Q6L8G8 165 aa1.41□□□□□ -2.18
Retrieved 77 of 20,778 RNA–protein pairs in 109 ms