RNA–Protein interactions for RNA: ENST00000298281.8

PCF11-201, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCF11, Length 7,677 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-201ENST00000298281 LOC100996750A0A140TA64 210 aa3.59□□□□□ -1.84
PCF11-201ENST00000298281 KRTAP20-1Q3LI63 56 aa3.58□□□□□ -1.84
PCF11-201ENST00000298281 RYR2Q92736 4967 aa3.57□□□□□ -1.84
PCF11-201ENST00000298281 HERC1Q15751 4861 aa3.54□□□□□ -1.84
PCF11-201ENST00000298281 SYNE1Q8NF91 8797 aaKnown RBP3.54□□□□□ -1.84
PCF11-201ENST00000298281 KRTAP19-2Q3LHN2 52 aa3.54□□□□□ -1.84
PCF11-201ENST00000298281 KIAA1109Q2LD37 5005 aa3.52□□□□□ -1.85
PCF11-201ENST00000298281 LRP2P98164 4655 aa3.5□□□□□ -1.85
PCF11-201ENST00000298281 LCE4AQ5TA78 99 aa3.49□□□□□ -1.85
PCF11-201ENST00000298281 MT1AP04731 61 aa3.48□□□□□ -1.85
PCF11-201ENST00000298281 HERC2O95714 4834 aa3.47□□□□□ -1.85
PCF11-201ENST00000298281 PCLOQ9Y6V0 5065 aa3.47□□□□□ -1.85
PCF11-201ENST00000298281 BIRC6Q9NR09 4857 aa3.46□□□□□ -1.86
PCF11-201ENST00000298281 KMT2CQ8NEZ4 4911 aaKnown RBP3.45□□□□□ -1.86
PCF11-201ENST00000298281 KRTAP9-7A8MTY7 169 aa3.45□□□□□ -1.86
PCF11-201ENST00000298281 KRTAP4-3Q9BYR4 195 aa3.45□□□□□ -1.86
PCF11-201ENST00000298281 KRTAP4-9Q9BYQ8 210 aa3.41□□□□□ -1.86
PCF11-201ENST00000298281 SYNE2Q8WXH0 6885 aaKnown RBP3.39□□□□□ -1.87
PCF11-201ENST00000298281 KRTAP2-3P0C7H8 128 aa3.39□□□□□ -1.87
PCF11-201ENST00000298281 KRTAP2-4Q9BYR9 128 aa3.39□□□□□ -1.87
PCF11-201ENST00000298281 KRTAP2-1Q9BYU5 128 aa3.39□□□□□ -1.87
PCF11-201ENST00000298281 LCE2AQ5TA79 106 aaPredicted RBP3.38□□□□□ -1.87
PCF11-201ENST00000298281 KRTAP19-7Q3SYF9 63 aa3.37□□□□□ -1.87
PCF11-201ENST00000298281 EPPK1P58107 5090 aaKnown RBP3.36□□□□□ -1.87
PCF11-201ENST00000298281 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.27□□□□□ -1.89
PCF11-201ENST00000298281 KRTAP6-2Q3LI66 62 aa3.25□□□□□ -1.89
PCF11-201ENST00000298281 ABCA13Q86UQ4 5058 aa3.22□□□□□ -1.89
PCF11-201ENST00000298281 KRTAP6-3Q3LI67 103 aa3.22□□□□□ -1.89
PCF11-201ENST00000298281 KRTAP9-9Q9BYP9 154 aa3.21□□□□□ -1.9
PCF11-201ENST00000298281 FSIP2Q5CZC0 6907 aa3.2□□□□□ -1.9
PCF11-201ENST00000298281 KRTAP9-4Q9BYQ2 154 aa3.18□□□□□ -1.9
PCF11-201ENST00000298281 OBSCNQ5VST9 7968 aa3.16□□□□□ -1.9
PCF11-201ENST00000298281 KRTAP6-1Q3LI64 71 aa3.13□□□□□ -1.91
PCF11-201ENST00000298281 KRTAP2-2Q9BYT5 123 aa3.11□□□□□ -1.91
PCF11-201ENST00000298281 KRTAP20-2Q3LI61 65 aa3.04□□□□□ -1.92
PCF11-201ENST00000298281 HMCN2Q8NDA2 5059 aa3.04□□□□□ -1.92
PCF11-201ENST00000298281 RNF213Q63HN8 5207 aa3□□□□□ -1.93
PCF11-201ENST00000298281 KRTAP9-6A8MVA2 160 aa2.99□□□□□ -1.93
PCF11-201ENST00000298281 MUC2Q02817 5179 aa2.98□□□□□ -1.93
PCF11-201ENST00000298281 UBR4Q5T4S7 5183 aa2.98□□□□□ -1.93
PCF11-201ENST00000298281 FAT4Q6V0I7 4981 aa2.93□□□□□ -1.94
PCF11-201ENST00000298281 DSTQ03001 7570 aaKnown RBP2.92□□□□□ -1.94
PCF11-201ENST00000298281 KRTAP4-11Q9BYQ6 195 aa2.89□□□□□ -1.95
PCF11-201ENST00000298281 MACF1Q9UPN3 7388 aaKnown RBP2.75□□□□□ -1.97
PCF11-201ENST00000298281 FCGBPQ9Y6R7 5405 aaPredicted RBP2.74□□□□□ -1.97
PCF11-201ENST00000298281 KRTAP4-4Q9BYR3 166 aa2.74□□□□□ -1.97
PCF11-201ENST00000298281 KRTAP4-6Q9BYQ5 205 aa2.73□□□□□ -1.97
PCF11-201ENST00000298281 KRTAP4-12Q9BQ66 201 aa2.68□□□□□ -1.98
PCF11-201ENST00000298281 KRTAP4-2Q9BYR5 136 aa2.68□□□□□ -1.98
PCF11-201ENST00000298281 KRTAP5-9P26371 169 aa2.63□□□□□ -1.99
PCF11-201ENST00000298281 KMT2DO14686 5537 aa2.55□□□□□ -2
PCF11-201ENST00000298281 USH2AO75445 5202 aa2.55□□□□□ -2
PCF11-201ENST00000298281 MUC19Q7Z5P9 8384 aa2.53□□□□□ -2
PCF11-201ENST00000298281 NEBP20929 6669 aa2.51□□□□□ -2.01
PCF11-201ENST00000298281 GPR98Q8WXG9 6306 aa2.45□□□□□ -2.02
PCF11-201ENST00000298281 KRTAP5-4Q6L8H1 288 aa2.4□□□□□ -2.03
PCF11-201ENST00000298281 SSPOA2VEC9 5147 aa2.38□□□□□ -2.03
PCF11-201ENST00000298281 MUC12Q9UKN1 5478 aa2.35□□□□□ -2.03
PCF11-201ENST00000298281 MDN1Q9NU22 5596 aa2.34□□□□□ -2.03
PCF11-201ENST00000298281 KRTAP5-5Q701N2 237 aaPredicted RBP2.22□□□□□ -2.05
PCF11-201ENST00000298281 PHGR1C9JFL3 82 aa2.14□□□□□ -2.07
PCF11-201ENST00000298281 KRTAP5-3Q6L8H2 238 aa2.12□□□□□ -2.07
PCF11-201ENST00000298281 MUC5ACP98088 5654 aa1.99□□□□□ -2.09
PCF11-201ENST00000298281 KRTAP5-8O75690 187 aa1.92□□□□□ -2.1
PCF11-201ENST00000298281 AHNAK2Q8IVF2 5795 aa1.9□□□□□ -2.11
PCF11-201ENST00000298281 HMCN1Q96RW7 5635 aa1.88□□□□□ -2.11
PCF11-201ENST00000298281 KRTAP5-10Q6L8G5 202 aa1.85□□□□□ -2.11
PCF11-201ENST00000298281 KRTAP5-2Q701N4 177 aa1.76□□□□□ -2.13
PCF11-201ENST00000298281 MUC5BQ9HC84 5762 aaPredicted RBP1.75□□□□□ -2.13
PCF11-201ENST00000298281 KRTAP5-11Q6L8G4 156 aa1.72□□□□□ -2.13
PCF11-201ENST00000298281 AHNAKQ09666 5890 aaKnown RBP1.63□□□□□ -2.15
PCF11-201ENST00000298281 KRTAP5-7Q6L8G8 165 aa1.6□□□□□ -2.15
PCF11-201ENST00000298281 KRTAP5-1Q6L8H4 278 aa1.6□□□□□ -2.15
PCF11-201ENST00000298281 KRTAP21-2Q3LI59 83 aa1.52□□□□□ -2.17
PCF11-201ENST00000298281 KRTAP21-1Q3LI58 79 aa1.52□□□□□ -2.17
PCF11-201ENST00000298281 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.47□□□□□ -2.17
PCF11-201ENST00000298281 MUC16Q8WXI7 14507 aa1.33□□□□□ -2.2
Retrieved 77 of 20,778 RNA–protein pairs in 6.5 ms