RNA–Protein interactions for RNA: ENST00000216456.6

VTI1B-201, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 1 (best)

Gene VTI1B, Length 1,103 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-201ENST00000216456 KRTAP4-7Q9BYR0 210 aa7.6□□□□□ -1.19
VTI1B-201ENST00000216456 KRTAP4-6Q9BYQ5 205 aa7.59□□□□□ -1.19
VTI1B-201ENST00000216456 AHNAK2Q8IVF2 5795 aa7.59□□□□□ -1.2
VTI1B-201ENST00000216456 ANAPC13Q9BS18 74 aa7.55□□□□□ -1.2
VTI1B-201ENST00000216456 CCDC179H3BU77 68 aa7.52□□□□□ -1.21
VTI1B-201ENST00000216456 KRTAP12-3P60328 96 aa7.45□□□□□ -1.22
VTI1B-201ENST00000216456 KRTAP5-10Q6L8G5 202 aa7.41□□□□□ -1.22
VTI1B-201ENST00000216456 PRR15LQ9BU68 103 aa7.41□□□□□ -1.22
VTI1B-201ENST00000216456 LINC01558Q9Y6Z2 57 aa7.38□□□□□ -1.23
VTI1B-201ENST00000216456 ATP5EP56381 51 aaPredicted RBP7.29□□□□□ -1.24
VTI1B-201ENST00000216456 KRTAP5-5Q701N2 237 aaPredicted RBP7.25□□□□□ -1.25
VTI1B-201ENST00000216456 KRTAP20-2Q3LI61 65 aa7.22□□□□□ -1.25
VTI1B-201ENST00000216456 LOC100996750A0A140TA64 210 aa7.2□□□□□ -1.26
VTI1B-201ENST00000216456 UQCR11O14957 56 aa7.2□□□□□ -1.26
VTI1B-201ENST00000216456 KRTAP5-3Q6L8H2 238 aa7.2□□□□□ -1.26
VTI1B-201ENST00000216456 KRTAP5-7Q6L8G8 165 aa7.11□□□□□ -1.27
VTI1B-201ENST00000216456 KRTAP25-1Q3LHN0 102 aa7.08□□□□□ -1.28
VTI1B-201ENST00000216456 SYNE1Q8NF91 8797 aaKnown RBP7.07□□□□□ -1.28
VTI1B-201ENST00000216456 SPRR5A0A1B0GTR4 108 aa7.07□□□□□ -1.28
VTI1B-201ENST00000216456 TMEM258P61165 79 aa7.06□□□□□ -1.28
VTI1B-201ENST00000216456 MIR22HGQ0VDD5 57 aa7.06□□□□□ -1.28
VTI1B-201ENST00000216456 KRTAP12-4P60329 112 aa7.02□□□□□ -1.29
VTI1B-201ENST00000216456 PSPHP1O15172 72 aa6.88□□□□□ -1.31
VTI1B-201ENST00000216456 KRTAP15-1Q3LI76 137 aa6.87□□□□□ -1.31
VTI1B-201ENST00000216456 K7ERS5 55 aa6.85□□□□□ -1.31
VTI1B-201ENST00000216456 LCE3CQ5T5A8 94 aa6.84□□□□□ -1.31
VTI1B-201ENST00000216456 KRTAP19-4Q3LI73 84 aa6.78□□□□□ -1.32
VTI1B-201ENST00000216456 KRTAP23-1A1A580 65 aa6.74□□□□□ -1.33
VTI1B-201ENST00000216456 KRTAP6-1Q3LI64 71 aa6.71□□□□□ -1.34
VTI1B-201ENST00000216456 Q1T7F1 81 aa6.69□□□□□ -1.34
VTI1B-201ENST00000216456 MT1AP04731 61 aa6.66□□□□□ -1.34
VTI1B-201ENST00000216456 V9GYY9 64 aa6.66□□□□□ -1.34
VTI1B-201ENST00000216456 KRTAP5-2Q701N4 177 aa6.63□□□□□ -1.35
VTI1B-201ENST00000216456 KRTAP4-11Q9BYQ6 195 aa6.62□□□□□ -1.35
VTI1B-201ENST00000216456 KRTAP9-6A8MVA2 160 aa6.58□□□□□ -1.36
VTI1B-201ENST00000216456 A6NED7 52 aa6.56□□□□□ -1.36
VTI1B-201ENST00000216456 CDC42SE1Q9NRR8 79 aa6.53□□□□□ -1.36
VTI1B-201ENST00000216456 KRTAP9-4Q9BYQ2 154 aa6.46□□□□□ -1.38
VTI1B-201ENST00000216456 ROMO1P60602 79 aa6.45□□□□□ -1.38
VTI1B-201ENST00000216456 KRTAP5-8O75690 187 aa6.43□□□□□ -1.38
VTI1B-201ENST00000216456 KRTAP6-2Q3LI66 62 aa6.43□□□□□ -1.38
VTI1B-201ENST00000216456 RPS28P62857 69 aaKnown RBP6.39□□□□□ -1.39
VTI1B-201ENST00000216456 OBSCNQ5VST9 7968 aa6.31□□□□□ -1.4
VTI1B-201ENST00000216456 MUC5BQ9HC84 5762 aaPredicted RBP6.25□□□□□ -1.41
VTI1B-201ENST00000216456 AHNAKQ09666 5890 aaKnown RBP6.25□□□□□ -1.41
VTI1B-201ENST00000216456 SVIPQ8NHG7 77 aa6.24□□□□□ -1.41
VTI1B-201ENST00000216456 MUC5ACP98088 5654 aa6.22□□□□□ -1.41
VTI1B-201ENST00000216456 KRTAP9-9Q9BYP9 154 aa6.07□□□□□ -1.44
VTI1B-201ENST00000216456 MT3P25713 68 aa6.06□□□□□ -1.44
VTI1B-201ENST00000216456 KRTAP5-1Q6L8H4 278 aa6.01□□□□□ -1.45
VTI1B-201ENST00000216456 H3BS24 57 aa5.95□□□□□ -1.46
VTI1B-201ENST00000216456 KRTAP4-12Q9BQ66 201 aa5.84□□□□□ -1.47
VTI1B-201ENST00000216456 PCP4P48539 62 aa5.8□□□□□ -1.48
VTI1B-201ENST00000216456 LCE1EQ5T753 118 aa5.57□□□□□ -1.52
VTI1B-201ENST00000216456 KRTAP4-2Q9BYR5 136 aa5.41□□□□□ -1.54
VTI1B-201ENST00000216456 LCE1BQ5T7P3 118 aa5.4□□□□□ -1.54
VTI1B-201ENST00000216456 BRK1Q8WUW1 75 aa5.35□□□□□ -1.55
VTI1B-201ENST00000216456 LCE1CQ5T751 118 aa5.2□□□□□ -1.58
VTI1B-201ENST00000216456 PRAC1Q96KF2 57 aa5.03□□□□□ -1.6
VTI1B-201ENST00000216456 PMAIP1Q13794 54 aa4.97□□□□□ -1.61
VTI1B-201ENST00000216456 A0A0A0MQY5 61 aa4.91□□□□□ -1.62
VTI1B-201ENST00000216456 LCE3DQ9BYE3 92 aa4.86□□□□□ -1.63
VTI1B-201ENST00000216456 KRTAP5-11Q6L8G4 156 aa4.74□□□□□ -1.65
VTI1B-201ENST00000216456 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.7□□□□□ -1.66
VTI1B-201ENST00000216456 LCE1FQ5T754 118 aa4.59□□□□□ -1.67
VTI1B-201ENST00000216456 LCE3EQ5T5B0 92 aa4.53□□□□□ -1.68
VTI1B-201ENST00000216456 KRTAP21-2Q3LI59 83 aa4.41□□□□□ -1.7
VTI1B-201ENST00000216456 PHGR1C9JFL3 82 aa4.33□□□□□ -1.72
VTI1B-201ENST00000216456 PRO0628Q9UI54 55 aa4.28□□□□□ -1.72
VTI1B-201ENST00000216456 KTN1-AS1Q86SY8 53 aa4.2□□□□□ -1.74
VTI1B-201ENST00000216456 KRTAP4-4Q9BYR3 166 aa4.16□□□□□ -1.74
VTI1B-201ENST00000216456 LUZP6Q538Z0 58 aa4.07□□□□□ -1.76
VTI1B-201ENST00000216456 MUC19Q7Z5P9 8384 aa3.91□□□□□ -1.78
VTI1B-201ENST00000216456 NDUFAF8A1L188 74 aa3.69□□□□□ -1.82
VTI1B-201ENST00000216456 PRM1P04553 51 aa3.35□□□□□ -1.87
VTI1B-201ENST00000216456 KRTAP21-1Q3LI58 79 aa3.22□□□□□ -1.89
VTI1B-201ENST00000216456 MUC16Q8WXI7 14507 aa2.77□□□□□ -1.97
VTI1B-201ENST00000216456 INE1O15225 51 aa2.37□□□□□ -2.03
Retrieved 78 of 20,778 RNA–protein pairs in 12.6 ms