RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 KLKP1Q107X0 134 aa9.12□□□□□ -0.95
CLN3-260ENST00000637578 KRTAP19-1Q8IUB9 90 aa9.07□□□□□ -0.96
CLN3-260ENST00000637578 FCGBPQ9Y6R7 5405 aaPredicted RBP9.07□□□□□ -0.96
CLN3-260ENST00000637578 KRTAP9-1A8MXZ3 250 aaPredicted RBP9.04□□□□□ -0.96
CLN3-260ENST00000637578 SERP2Q8N6R1 65 aa9.02□□□□□ -0.97
CLN3-260ENST00000637578 S4R3F8 94 aa9□□□□□ -0.97
CLN3-260ENST00000637578 LCA10Q71F78 164 aa8.96□□□□□ -0.97
CLN3-260ENST00000637578 SNURFQ9Y675 71 aa8.95□□□□□ -0.98
CLN3-260ENST00000637578 A8MUN3 132 aa8.95□□□□□ -0.98
CLN3-260ENST00000637578 KRTAP19-6Q3LI70 58 aa8.95□□□□□ -0.98
CLN3-260ENST00000637578 C20orf197Q8N268 126 aa8.93□□□□□ -0.98
CLN3-260ENST00000637578 KRTAP9-7A8MTY7 169 aa8.9□□□□□ -0.98
CLN3-260ENST00000637578 KRTAP3-3Q9BYR6 98 aa8.89□□□□□ -0.99
CLN3-260ENST00000637578 DMAC1Q96GE9 116 aa8.87□□□□□ -0.99
CLN3-260ENST00000637578 COX7CP15954 63 aa8.86□□□□□ -0.99
CLN3-260ENST00000637578 CSAG1Q6PB30 78 aa8.86□□□□□ -0.99
CLN3-260ENST00000637578 ANAPC13Q9BS18 74 aa8.8□□□□□ -1
CLN3-260ENST00000637578 NDUFC1O43677 76 aa8.79□□□□□ -1
CLN3-260ENST00000637578 MACF1Q9UPN3 7388 aaKnown RBP8.75□□□□□ -1.01
CLN3-260ENST00000637578 SPANXA2-OT1Q8N9U9 137 aa8.73□□□□□ -1.01
CLN3-260ENST00000637578 ACYP2P14621 99 aa8.72□□□□□ -1.01
CLN3-260ENST00000637578 CYSTM1Q9H1C7 97 aa8.7□□□□□ -1.02
CLN3-260ENST00000637578 SPRR2GQ9BYE4 73 aa8.69□□□□□ -1.02
CLN3-260ENST00000637578 SYNE2Q8WXH0 6885 aaKnown RBP8.65□□□□□ -1.03
CLN3-260ENST00000637578 H7BZZ5 65 aa8.65□□□□□ -1.03
CLN3-260ENST00000637578 MT1BP07438 61 aa8.64□□□□□ -1.03
CLN3-260ENST00000637578 KRTAP19-8Q3LI54 63 aa8.64□□□□□ -1.03
CLN3-260ENST00000637578 CCDC179H3BU77 68 aa8.62□□□□□ -1.03
CLN3-260ENST00000637578 H0YAA0 97 aa8.59□□□□□ -1.03
CLN3-260ENST00000637578 Q5VV11 94 aa8.58□□□□□ -1.04
CLN3-260ENST00000637578 CHKB-CPT1BH3BT56 60 aa8.57□□□□□ -1.04
CLN3-260ENST00000637578 ADM2Q7Z4H4 148 aa8.53□□□□□ -1.04
CLN3-260ENST00000637578 CRIPTQ9P021 101 aa8.53□□□□□ -1.04
CLN3-260ENST00000637578 SPTSSBQ8NFR3 76 aa8.52□□□□□ -1.05
CLN3-260ENST00000637578 COA5Q86WW8 74 aa8.49□□□□□ -1.05
CLN3-260ENST00000637578 A6NN06 94 aa8.48□□□□□ -1.05
CLN3-260ENST00000637578 KRTAP6-3Q3LI67 103 aa8.48□□□□□ -1.05
CLN3-260ENST00000637578 KRTAP10-5P60370 271 aa8.43□□□□□ -1.06
CLN3-260ENST00000637578 KRTAP3-2Q9BYR7 98 aa8.42□□□□□ -1.06
CLN3-260ENST00000637578 P0C880 135 aa8.41□□□□□ -1.06
CLN3-260ENST00000637578 ATP5EP56381 51 aaPredicted RBP8.34□□□□□ -1.07
CLN3-260ENST00000637578 TMEM258P61165 79 aa8.3□□□□□ -1.08
CLN3-260ENST00000637578 R4GN34 69 aa8.27□□□□□ -1.09
CLN3-260ENST00000637578 M0QZ58 72 aa8.24□□□□□ -1.09
CLN3-260ENST00000637578 NEBP20929 6669 aa8.16□□□□□ -1.1
CLN3-260ENST00000637578 SEC61GP60059 68 aa8.14□□□□□ -1.11
CLN3-260ENST00000637578 MUC12Q9UKN1 5478 aa8.13□□□□□ -1.11
CLN3-260ENST00000637578 KRTAP5-9P26371 169 aa8.13□□□□□ -1.11
CLN3-260ENST00000637578 SERP1Q9Y6X1 66 aa8.12□□□□□ -1.11
CLN3-260ENST00000637578 PCP4P48539 62 aa8.11□□□□□ -1.11
CLN3-260ENST00000637578 MT1XP80297 61 aa8.1□□□□□ -1.11
CLN3-260ENST00000637578 LINC01554Q52M75 96 aa8.1□□□□□ -1.11
CLN3-260ENST00000637578 SVIPQ8NHG7 77 aa8.09□□□□□ -1.11
CLN3-260ENST00000637578 PLAC4Q8WY50 150 aa8.09□□□□□ -1.11
CLN3-260ENST00000637578 PRO2289Q9P1D8 64 aa8.08□□□□□ -1.12
CLN3-260ENST00000637578 KRTAP13-4Q3LI77 160 aa8.05□□□□□ -1.12
CLN3-260ENST00000637578 A0A1B0GU69 56 aa8.03□□□□□ -1.12
CLN3-260ENST00000637578 KMT2DO14686 5537 aa8.01□□□□□ -1.13
CLN3-260ENST00000637578 A0A1B0GU33 70 aa7.97□□□□□ -1.13
CLN3-260ENST00000637578 LINC01558Q9Y6Z2 57 aa7.95□□□□□ -1.14
CLN3-260ENST00000637578 MDN1Q9NU22 5596 aa7.93□□□□□ -1.14
CLN3-260ENST00000637578 KRTAP12-2P59991 146 aa7.92□□□□□ -1.14
CLN3-260ENST00000637578 SPATA8Q6RVD6 105 aa7.91□□□□□ -1.14
CLN3-260ENST00000637578 PRR15LQ9BU68 103 aa7.9□□□□□ -1.14
CLN3-260ENST00000637578 A0A0D9SG42 100 aa7.84□□□□□ -1.15
CLN3-260ENST00000637578 SPRR2FQ96RM1 72 aa7.81□□□□□ -1.16
CLN3-260ENST00000637578 KRTAP20-1Q3LI63 56 aa7.8□□□□□ -1.16
CLN3-260ENST00000637578 KRTAP8-1Q8IUC2 63 aa7.8□□□□□ -1.16
CLN3-260ENST00000637578 SMIM26A0A096LP01 95 aa7.73□□□□□ -1.17
CLN3-260ENST00000637578 Q1T7F1 81 aa7.73□□□□□ -1.17
CLN3-260ENST00000637578 V9GYY9 64 aa7.73□□□□□ -1.17
CLN3-260ENST00000637578 KRTAP4-8A0A0G2JLE6 195 aa7.72□□□□□ -1.17
CLN3-260ENST00000637578 KRTAP4-8Q9BYQ9 185 aa7.72□□□□□ -1.17
CLN3-260ENST00000637578 A8MU10 97 aa7.71□□□□□ -1.17
CLN3-260ENST00000637578 KRTAP10-7P60409 375 aaPredicted RBP7.71□□□□□ -1.17
CLN3-260ENST00000637578 RPS28P62857 69 aaKnown RBP7.71□□□□□ -1.17
CLN3-260ENST00000637578 KRTAP10-12P60413 245 aa7.71□□□□□ -1.18
CLN3-260ENST00000637578 SPRR2EP22531 72 aa7.69□□□□□ -1.18
CLN3-260ENST00000637578 SPRR2BP35325 72 aa7.69□□□□□ -1.18
CLN3-260ENST00000637578 SPRR2AP35326 72 aa7.69□□□□□ -1.18
CLN3-260ENST00000637578 KRTAP12-1P59990 96 aa7.69□□□□□ -1.18
CLN3-260ENST00000637578 SPINT4Q6UDR6 99 aa7.68□□□□□ -1.18
CLN3-260ENST00000637578 CAMK2N1Q7Z7J9 78 aa7.67□□□□□ -1.18
CLN3-260ENST00000637578 PSPHP1O15172 72 aa7.67□□□□□ -1.18
CLN3-260ENST00000637578 UQCR11O14957 56 aa7.66□□□□□ -1.18
CLN3-260ENST00000637578 LCE1AQ5T7P2 110 aa7.64□□□□□ -1.19
CLN3-260ENST00000637578 KRTAP2-3P0C7H8 128 aa7.63□□□□□ -1.19
CLN3-260ENST00000637578 KRTAP2-4Q9BYR9 128 aa7.63□□□□□ -1.19
CLN3-260ENST00000637578 MIR22HGQ0VDD5 57 aa7.54□□□□□ -1.2
CLN3-260ENST00000637578 SPRR2DP22532 72 aa7.43□□□□□ -1.22
CLN3-260ENST00000637578 A6NED7 52 aa7.42□□□□□ -1.22
CLN3-260ENST00000637578 KRTAP2-2Q9BYT5 123 aa7.39□□□□□ -1.23
CLN3-260ENST00000637578 KRTAP2-1Q9BYU5 128 aa7.39□□□□□ -1.23
CLN3-260ENST00000637578 C10orf95Q9H7T3 257 aa7.32□□□□□ -1.24
CLN3-260ENST00000637578 K7ERS5 55 aa7.29□□□□□ -1.24
CLN3-260ENST00000637578 KRTAP19-7Q3SYF9 63 aa7.25□□□□□ -1.25
CLN3-260ENST00000637578 LCE3BQ5TA77 95 aa7.25□□□□□ -1.25
CLN3-260ENST00000637578 TNP1P09430 55 aa7.18□□□□□ -1.26
CLN3-260ENST00000637578 CDC42SE1Q9NRR8 79 aa7.18□□□□□ -1.26
CLN3-260ENST00000637578 MT1EP04732 61 aa7.17□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 182.2 ms