RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 LCA10Q71F78 164 aa7.22□□□□□ -1.25
CLN3-246ENST00000636228 SPRR2GQ9BYE4 73 aa7.22□□□□□ -1.25
CLN3-246ENST00000636228 C1orf64Q8NEQ6 169 aa7.21□□□□□ -1.26
CLN3-246ENST00000636228 TP53AIP1Q9HCN2 124 aa7.2□□□□□ -1.26
CLN3-246ENST00000636228 KRTAP10-5P60370 271 aa7.18□□□□□ -1.26
CLN3-246ENST00000636228 MDN1Q9NU22 5596 aa7.14□□□□□ -1.27
CLN3-246ENST00000636228 KLKP1Q107X0 134 aa7.13□□□□□ -1.27
CLN3-246ENST00000636228 KRTAP20-1Q3LI63 56 aa7.12□□□□□ -1.27
CLN3-246ENST00000636228 OCR1Q9BZK8 76 aa7.12□□□□□ -1.27
CLN3-246ENST00000636228 KMT2DO14686 5537 aa7.11□□□□□ -1.27
CLN3-246ENST00000636228 UQCRQO14949 82 aa7.11□□□□□ -1.27
CLN3-246ENST00000636228 TRAV22A0A0B4J277 110 aa7.1□□□□□ -1.27
CLN3-246ENST00000636228 KRTAP3-3Q9BYR6 98 aa7.1□□□□□ -1.27
CLN3-246ENST00000636228 SCGB1A1P11684 91 aa7.07□□□□□ -1.28
CLN3-246ENST00000636228 KRTAP5-9P26371 169 aa7.07□□□□□ -1.28
CLN3-246ENST00000636228 H0Y9P7 68 aa7.04□□□□□ -1.28
CLN3-246ENST00000636228 ATOX1O00244 68 aa7.02□□□□□ -1.29
CLN3-246ENST00000636228 LOC101927531A0A1B0GV80 90 aa7.01□□□□□ -1.29
CLN3-246ENST00000636228 SMIM20Q8N5G0 67 aa7□□□□□ -1.29
CLN3-246ENST00000636228 CYP4F30PQ9H0H9 118 aa6.99□□□□□ -1.29
CLN3-246ENST00000636228 TRAV7A0A075B6U4 112 aa6.98□□□□□ -1.29
CLN3-246ENST00000636228 MP68P56378 58 aa6.98□□□□□ -1.29
CLN3-246ENST00000636228 LINC00208Q96KT6 92 aa6.96□□□□□ -1.3
CLN3-246ENST00000636228 CRIPTQ9P021 101 aa6.96□□□□□ -1.3
CLN3-246ENST00000636228 H3BPC8 53 aa6.95□□□□□ -1.3
CLN3-246ENST00000636228 SERP2Q8N6R1 65 aa6.9□□□□□ -1.3
CLN3-246ENST00000636228 KRTAP2-3P0C7H8 128 aa6.87□□□□□ -1.31
CLN3-246ENST00000636228 KRTAP2-4Q9BYR9 128 aa6.87□□□□□ -1.31
CLN3-246ENST00000636228 SPRR2FQ96RM1 72 aa6.85□□□□□ -1.31
CLN3-246ENST00000636228 NDUFC1O43677 76 aa6.84□□□□□ -1.31
CLN3-246ENST00000636228 SPRR2EP22531 72 aa6.82□□□□□ -1.32
CLN3-246ENST00000636228 SPRR2BP35325 72 aa6.82□□□□□ -1.32
CLN3-246ENST00000636228 SPRR2AP35326 72 aa6.82□□□□□ -1.32
CLN3-246ENST00000636228 ADM2Q7Z4H4 148 aa6.82□□□□□ -1.32
CLN3-246ENST00000636228 H0YAA0 97 aa6.81□□□□□ -1.32
CLN3-246ENST00000636228 COX7CP15954 63 aa6.8□□□□□ -1.32
CLN3-246ENST00000636228 C20orf197Q8N268 126 aa6.8□□□□□ -1.32
CLN3-246ENST00000636228 MT1XP80297 61 aa6.79□□□□□ -1.32
CLN3-246ENST00000636228 SNURFQ9Y675 71 aa6.79□□□□□ -1.32
CLN3-246ENST00000636228 A8MUN3 132 aa6.78□□□□□ -1.32
CLN3-246ENST00000636228 ANAPC13Q9BS18 74 aa6.76□□□□□ -1.33
CLN3-246ENST00000636228 PRO2289Q9P1D8 64 aa6.76□□□□□ -1.33
CLN3-246ENST00000636228 KRTAP8-1Q8IUC2 63 aa6.73□□□□□ -1.33
CLN3-246ENST00000636228 PLAC4Q8WY50 150 aa6.72□□□□□ -1.33
CLN3-246ENST00000636228 DMAC1Q96GE9 116 aa6.7□□□□□ -1.34
CLN3-246ENST00000636228 LCE1AQ5T7P2 110 aa6.68□□□□□ -1.34
CLN3-246ENST00000636228 SPANXA2-OT1Q8N9U9 137 aa6.66□□□□□ -1.34
CLN3-246ENST00000636228 CYSTM1Q9H1C7 97 aa6.66□□□□□ -1.34
CLN3-246ENST00000636228 KRTAP4-8A0A0G2JLE6 195 aa6.64□□□□□ -1.35
CLN3-246ENST00000636228 CCDC179H3BU77 68 aa6.64□□□□□ -1.35
CLN3-246ENST00000636228 P0C880 135 aa6.64□□□□□ -1.35
CLN3-246ENST00000636228 KRTAP4-8Q9BYQ9 185 aa6.64□□□□□ -1.35
CLN3-246ENST00000636228 KRTAP2-2Q9BYT5 123 aa6.64□□□□□ -1.35
CLN3-246ENST00000636228 KRTAP2-1Q9BYU5 128 aa6.64□□□□□ -1.35
CLN3-246ENST00000636228 H7BZZ5 65 aa6.63□□□□□ -1.35
CLN3-246ENST00000636228 R4GN34 69 aa6.63□□□□□ -1.35
CLN3-246ENST00000636228 KRTAP12-2P59991 146 aa6.62□□□□□ -1.35
CLN3-246ENST00000636228 M0QZ58 72 aa6.58□□□□□ -1.36
CLN3-246ENST00000636228 ACYP2P14621 99 aa6.58□□□□□ -1.36
CLN3-246ENST00000636228 SPRR2DP22532 72 aa6.58□□□□□ -1.36
CLN3-246ENST00000636228 LINC01554Q52M75 96 aa6.55□□□□□ -1.36
CLN3-246ENST00000636228 KRTAP10-7P60409 375 aaPredicted RBP6.51□□□□□ -1.37
CLN3-246ENST00000636228 KRTAP3-2Q9BYR7 98 aa6.51□□□□□ -1.37
CLN3-246ENST00000636228 CHKB-CPT1BH3BT56 60 aa6.45□□□□□ -1.38
CLN3-246ENST00000636228 COA5Q86WW8 74 aa6.45□□□□□ -1.38
CLN3-246ENST00000636228 LCE3BQ5TA77 95 aa6.43□□□□□ -1.38
CLN3-246ENST00000636228 ATP5EP56381 51 aaPredicted RBP6.42□□□□□ -1.38
CLN3-246ENST00000636228 KRTAP10-12P60413 245 aa6.42□□□□□ -1.38
CLN3-246ENST00000636228 TMEM258P61165 79 aa6.41□□□□□ -1.38
CLN3-246ENST00000636228 SPTSSBQ8NFR3 76 aa6.41□□□□□ -1.38
CLN3-246ENST00000636228 PCP4P48539 62 aa6.36□□□□□ -1.39
CLN3-246ENST00000636228 SERP1Q9Y6X1 66 aa6.2□□□□□ -1.42
CLN3-246ENST00000636228 DSTQ03001 7570 aaKnown RBP6.18□□□□□ -1.42
CLN3-246ENST00000636228 GPR98Q8WXG9 6306 aa6.18□□□□□ -1.42
CLN3-246ENST00000636228 SEC61GP60059 68 aa6.13□□□□□ -1.43
CLN3-246ENST00000636228 KRTAP13-4Q3LI77 160 aa6.11□□□□□ -1.43
CLN3-246ENST00000636228 KRTAP4-9Q9BYQ8 210 aa6.11□□□□□ -1.43
CLN3-246ENST00000636228 A0A1B0GU69 56 aa6.08□□□□□ -1.44
CLN3-246ENST00000636228 KRTAP19-7Q3SYF9 63 aa6.08□□□□□ -1.44
CLN3-246ENST00000636228 LINC01558Q9Y6Z2 57 aa6.08□□□□□ -1.44
CLN3-246ENST00000636228 LCE5AQ5TCM9 118 aa6.07□□□□□ -1.44
CLN3-246ENST00000636228 CAMK2N1Q7Z7J9 78 aa6.07□□□□□ -1.44
CLN3-246ENST00000636228 MT1EP04732 61 aa6.04□□□□□ -1.44
CLN3-246ENST00000636228 A0A1B0GU33 70 aa6.02□□□□□ -1.45
CLN3-246ENST00000636228 RPS28P62857 69 aaKnown RBP6.02□□□□□ -1.45
CLN3-246ENST00000636228 KRTAP19-3Q7Z4W3 81 aa6.02□□□□□ -1.45
CLN3-246ENST00000636228 PRR15LQ9BU68 103 aa6.01□□□□□ -1.45
CLN3-246ENST00000636228 SMIM26A0A096LP01 95 aa5.98□□□□□ -1.45
CLN3-246ENST00000636228 Q1T7F1 81 aa5.96□□□□□ -1.46
CLN3-246ENST00000636228 SPATA8Q6RVD6 105 aa5.95□□□□□ -1.46
CLN3-246ENST00000636228 V9GYY9 64 aa5.95□□□□□ -1.46
CLN3-246ENST00000636228 A0A0D9SG42 100 aa5.9□□□□□ -1.46
CLN3-246ENST00000636228 LCE1DQ5T752 114 aa5.89□□□□□ -1.47
CLN3-246ENST00000636228 KRTAP19-5Q3LI72 72 aa5.88□□□□□ -1.47
CLN3-246ENST00000636228 PSPHP1O15172 72 aa5.86□□□□□ -1.47
CLN3-246ENST00000636228 SVIPQ8NHG7 77 aa5.84□□□□□ -1.47
CLN3-246ENST00000636228 UQCR11O14957 56 aa5.83□□□□□ -1.48
CLN3-246ENST00000636228 MT1GP13640 62 aa5.83□□□□□ -1.48
CLN3-246ENST00000636228 HMCN1Q96RW7 5635 aa5.83□□□□□ -1.48
CLN3-246ENST00000636228 MT4P47944 62 aa5.82□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 8.1 ms