RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 CRIPTQ9P021 101 aa6.08□□□□□ -1.44
TRIM28-211ENST00000597968 KRTAP10-5P60370 271 aa6.07□□□□□ -1.44
TRIM28-211ENST00000597968 CYP4F30PQ9H0H9 118 aa6.02□□□□□ -1.45
TRIM28-211ENST00000597968 KRTAP3-3Q9BYR6 98 aa6.01□□□□□ -1.45
TRIM28-211ENST00000597968 NEBP20929 6669 aa6□□□□□ -1.45
TRIM28-211ENST00000597968 A0A087WVE0 104 aa6□□□□□ -1.45
TRIM28-211ENST00000597968 KRTAP5-9P26371 169 aa6□□□□□ -1.45
TRIM28-211ENST00000597968 LOC101927531A0A1B0GV80 90 aa5.97□□□□□ -1.45
TRIM28-211ENST00000597968 IMUPQ9GZP8 106 aa5.97□□□□□ -1.45
TRIM28-211ENST00000597968 TRAV22A0A0B4J277 110 aa5.95□□□□□ -1.46
TRIM28-211ENST00000597968 H0YAA0 97 aa5.95□□□□□ -1.46
TRIM28-211ENST00000597968 HIST1H4AP62805 103 aaKnown RBP5.93□□□□□ -1.46
TRIM28-211ENST00000597968 KRTAP20-1Q3LI63 56 aa5.93□□□□□ -1.46
TRIM28-211ENST00000597968 ACYP1P07311 99 aa5.92□□□□□ -1.46
TRIM28-211ENST00000597968 ANAPC13Q9BS18 74 aa5.91□□□□□ -1.46
TRIM28-211ENST00000597968 KMT2DO14686 5537 aa5.91□□□□□ -1.46
TRIM28-211ENST00000597968 NDUFC1O43677 76 aa5.9□□□□□ -1.46
TRIM28-211ENST00000597968 MT-ATP8P03928 68 aa5.9□□□□□ -1.46
TRIM28-211ENST00000597968 MDN1Q9NU22 5596 aa5.89□□□□□ -1.47
TRIM28-211ENST00000597968 FAM240AA0A1B0GVK7 77 aa5.88□□□□□ -1.47
TRIM28-211ENST00000597968 H0Y9P7 68 aa5.88□□□□□ -1.47
TRIM28-211ENST00000597968 ATOX1O00244 68 aa5.88□□□□□ -1.47
TRIM28-211ENST00000597968 UQCRQO14949 82 aa5.88□□□□□ -1.47
TRIM28-211ENST00000597968 A8MUN3 132 aa5.87□□□□□ -1.47
TRIM28-211ENST00000597968 ATP5EP2Q5VTU8 51 aa5.87□□□□□ -1.47
TRIM28-211ENST00000597968 PRO2289Q9P1D8 64 aa5.84□□□□□ -1.47
TRIM28-211ENST00000597968 LINC00643Q86TS7 51 aa5.81□□□□□ -1.48
TRIM28-211ENST00000597968 SMIM20Q8N5G0 67 aa5.79□□□□□ -1.48
TRIM28-211ENST00000597968 LINC00208Q96KT6 92 aa5.79□□□□□ -1.48
TRIM28-211ENST00000597968 CCDC179H3BU77 68 aa5.78□□□□□ -1.48
TRIM28-211ENST00000597968 RPS28P62857 69 aaKnown RBP5.78□□□□□ -1.48
TRIM28-211ENST00000597968 KRTAP2-3P0C7H8 128 aa5.77□□□□□ -1.49
TRIM28-211ENST00000597968 KRTAP2-4Q9BYR9 128 aa5.77□□□□□ -1.49
TRIM28-211ENST00000597968 ADM2Q7Z4H4 148 aa5.76□□□□□ -1.49
TRIM28-211ENST00000597968 PLAC4Q8WY50 150 aa5.74□□□□□ -1.49
TRIM28-211ENST00000597968 OCR1Q9BZK8 76 aa5.74□□□□□ -1.49
TRIM28-211ENST00000597968 C20orf197Q8N268 126 aa5.72□□□□□ -1.49
TRIM28-211ENST00000597968 SPRR2FQ96RM1 72 aa5.72□□□□□ -1.49
TRIM28-211ENST00000597968 MP68P56378 58 aa5.71□□□□□ -1.5
TRIM28-211ENST00000597968 MT1XP80297 61 aa5.71□□□□□ -1.5
TRIM28-211ENST00000597968 KRTAP12-2P59991 146 aa5.7□□□□□ -1.5
TRIM28-211ENST00000597968 R4GN34 69 aa5.69□□□□□ -1.5
TRIM28-211ENST00000597968 SPRR2EP22531 72 aa5.67□□□□□ -1.5
TRIM28-211ENST00000597968 SPRR2BP35325 72 aa5.67□□□□□ -1.5
TRIM28-211ENST00000597968 SPRR2AP35326 72 aa5.67□□□□□ -1.5
TRIM28-211ENST00000597968 KRTAP8-1Q8IUC2 63 aa5.66□□□□□ -1.5
TRIM28-211ENST00000597968 COX7CP15954 63 aa5.65□□□□□ -1.5
TRIM28-211ENST00000597968 P0C880 135 aa5.63□□□□□ -1.51
TRIM28-211ENST00000597968 H3BPC8 53 aa5.62□□□□□ -1.51
TRIM28-211ENST00000597968 TMEM258P61165 79 aa5.62□□□□□ -1.51
TRIM28-211ENST00000597968 M0QZ58 72 aa5.59□□□□□ -1.51
TRIM28-211ENST00000597968 LCE1AQ5T7P2 110 aa5.59□□□□□ -1.51
TRIM28-211ENST00000597968 DMAC1Q96GE9 116 aa5.59□□□□□ -1.51
TRIM28-211ENST00000597968 KRTAP2-2Q9BYT5 123 aa5.58□□□□□ -1.52
TRIM28-211ENST00000597968 KRTAP2-1Q9BYU5 128 aa5.58□□□□□ -1.52
TRIM28-211ENST00000597968 KRTAP3-2Q9BYR7 98 aa5.57□□□□□ -1.52
TRIM28-211ENST00000597968 SERP2Q8N6R1 65 aa5.55□□□□□ -1.52
TRIM28-211ENST00000597968 LINC01554Q52M75 96 aa5.51□□□□□ -1.53
TRIM28-211ENST00000597968 TRAV7A0A075B6U4 112 aa5.5□□□□□ -1.53
TRIM28-211ENST00000597968 SPRR2DP22532 72 aa5.49□□□□□ -1.53
TRIM28-211ENST00000597968 KRTAP4-8A0A0G2JLE6 195 aa5.47□□□□□ -1.53
TRIM28-211ENST00000597968 KRTAP10-12P60413 245 aa5.47□□□□□ -1.53
TRIM28-211ENST00000597968 KRTAP4-8Q9BYQ9 185 aa5.47□□□□□ -1.53
TRIM28-211ENST00000597968 PRO0628Q9UI54 55 aa5.46□□□□□ -1.54
TRIM28-211ENST00000597968 SERP1Q9Y6X1 66 aa5.45□□□□□ -1.54
TRIM28-211ENST00000597968 ACYP2P14621 99 aa5.44□□□□□ -1.54
TRIM28-211ENST00000597968 SPTSSBQ8NFR3 76 aa5.44□□□□□ -1.54
TRIM28-211ENST00000597968 KRTAP10-7P60409 375 aaPredicted RBP5.42□□□□□ -1.54
TRIM28-211ENST00000597968 ATP5EP56381 51 aaPredicted RBP5.41□□□□□ -1.54
TRIM28-211ENST00000597968 CYSTM1Q9H1C7 97 aa5.41□□□□□ -1.54
TRIM28-211ENST00000597968 SMIM26A0A096LP01 95 aa5.4□□□□□ -1.54
TRIM28-211ENST00000597968 SNURFQ9Y675 71 aa5.37□□□□□ -1.55
TRIM28-211ENST00000597968 H7BZZ5 65 aa5.36□□□□□ -1.55
TRIM28-211ENST00000597968 LCE3BQ5TA77 95 aa5.36□□□□□ -1.55
TRIM28-211ENST00000597968 CHKB-CPT1BH3BT56 60 aa5.34□□□□□ -1.55
TRIM28-211ENST00000597968 V9GYY9 64 aa5.27□□□□□ -1.57
TRIM28-211ENST00000597968 SEC61GP60059 68 aa5.25□□□□□ -1.57
TRIM28-211ENST00000597968 KRTAP13-4Q3LI77 160 aa5.25□□□□□ -1.57
TRIM28-211ENST00000597968 SPANXA2-OT1Q8N9U9 137 aa5.22□□□□□ -1.57
TRIM28-211ENST00000597968 CAMK2N1Q7Z7J9 78 aa5.18□□□□□ -1.58
TRIM28-211ENST00000597968 Q1T7F1 81 aa5.16□□□□□ -1.58
TRIM28-211ENST00000597968 BRK1Q8WUW1 75 aa5.16□□□□□ -1.58
TRIM28-211ENST00000597968 LCE5AQ5TCM9 118 aa5.15□□□□□ -1.59
TRIM28-211ENST00000597968 PMAIP1Q13794 54 aa5.14□□□□□ -1.59
TRIM28-211ENST00000597968 COA5Q86WW8 74 aa5.12□□□□□ -1.59
TRIM28-211ENST00000597968 KRTAP19-7Q3SYF9 63 aa5.11□□□□□ -1.59
TRIM28-211ENST00000597968 KRTAP19-3Q7Z4W3 81 aa5.1□□□□□ -1.59
TRIM28-211ENST00000597968 DSTQ03001 7570 aaKnown RBP5.09□□□□□ -1.59
TRIM28-211ENST00000597968 A0A0D9SG42 100 aa5.08□□□□□ -1.6
TRIM28-211ENST00000597968 MT1EP04732 61 aa5.08□□□□□ -1.6
TRIM28-211ENST00000597968 SPATA8Q6RVD6 105 aa5.05□□□□□ -1.6
TRIM28-211ENST00000597968 MT1GP13640 62 aa5□□□□□ -1.61
TRIM28-211ENST00000597968 A0A1B0GU33 70 aa4.99□□□□□ -1.61
TRIM28-211ENST00000597968 SPINT4Q6UDR6 99 aa4.99□□□□□ -1.61
TRIM28-211ENST00000597968 PP632Q6XCG6 107 aa4.98□□□□□ -1.61
TRIM28-211ENST00000597968 KTN1-AS1Q86SY8 53 aa4.97□□□□□ -1.61
TRIM28-211ENST00000597968 KRTAP4-9Q9BYQ8 210 aa4.97□□□□□ -1.61
TRIM28-211ENST00000597968 GPR98Q8WXG9 6306 aa4.96□□□□□ -1.62
TRIM28-211ENST00000597968 KRTAP12-1P59990 96 aa4.94□□□□□ -1.62
TRIM28-211ENST00000597968 LCE4AQ5TA78 99 aa4.92□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 73.4 ms