RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 ACYP2P14621 99 aa7.29□□□□□ -1.24
VRK3-212ENST00000596814 LCE2CQ5TA81 110 aa7.26□□□□□ -1.25
VRK3-212ENST00000596814 SERP1Q9Y6X1 66 aa7.24□□□□□ -1.25
VRK3-212ENST00000596814 S4R3F8 94 aa7.22□□□□□ -1.25
VRK3-212ENST00000596814 FLGP20930 4061 aaPredicted RBP7.2□□□□□ -1.26
VRK3-212ENST00000596814 SMIM26A0A096LP01 95 aa7.2□□□□□ -1.26
VRK3-212ENST00000596814 COA5Q86WW8 74 aa7.2□□□□□ -1.26
VRK3-212ENST00000596814 FAT4Q6V0I7 4981 aa7.18□□□□□ -1.26
VRK3-212ENST00000596814 CHKB-CPT1BH3BT56 60 aa7.18□□□□□ -1.26
VRK3-212ENST00000596814 LCA10Q71F78 164 aa7.18□□□□□ -1.26
VRK3-212ENST00000596814 MT1HP80294 61 aa7.15□□□□□ -1.27
VRK3-212ENST00000596814 KRTAP3-3Q9BYR6 98 aa7.13□□□□□ -1.27
VRK3-212ENST00000596814 M0R2T5 61 aa7.08□□□□□ -1.28
VRK3-212ENST00000596814 SPTSSBQ8NFR3 76 aa7.08□□□□□ -1.28
VRK3-212ENST00000596814 CSAG1Q6PB30 78 aa7.07□□□□□ -1.28
VRK3-212ENST00000596814 BRK1Q8WUW1 75 aa7.01□□□□□ -1.29
VRK3-212ENST00000596814 LCE2AQ5TA79 106 aaPredicted RBP7.01□□□□□ -1.29
VRK3-212ENST00000596814 PMAIP1Q13794 54 aa7□□□□□ -1.29
VRK3-212ENST00000596814 KRTAP10-6P60371 365 aaPredicted RBP6.92□□□□□ -1.3
VRK3-212ENST00000596814 H0YAA0 97 aa6.9□□□□□ -1.31
VRK3-212ENST00000596814 LORP23490 312 aaPredicted RBP6.88□□□□□ -1.31
VRK3-212ENST00000596814 ADM2Q7Z4H4 148 aa6.87□□□□□ -1.31
VRK3-212ENST00000596814 KRTAP9-8Q9BYQ0 159 aa6.84□□□□□ -1.31
VRK3-212ENST00000596814 LINC01558Q9Y6Z2 57 aa6.84□□□□□ -1.31
VRK3-212ENST00000596814 A0A1B0GU69 56 aa6.81□□□□□ -1.32
VRK3-212ENST00000596814 MT2AP02795 61 aa6.81□□□□□ -1.32
VRK3-212ENST00000596814 Q1T7F1 81 aa6.81□□□□□ -1.32
VRK3-212ENST00000596814 KRTAP3-2Q9BYR7 98 aa6.81□□□□□ -1.32
VRK3-212ENST00000596814 P0C880 135 aa6.79□□□□□ -1.32
VRK3-212ENST00000596814 PRR15LQ9BU68 103 aa6.78□□□□□ -1.32
VRK3-212ENST00000596814 MT1FP04733 61 aa6.77□□□□□ -1.33
VRK3-212ENST00000596814 KRTAP10-10P60014 251 aa6.76□□□□□ -1.33
VRK3-212ENST00000596814 KTN1-AS1Q86SY8 53 aa6.73□□□□□ -1.33
VRK3-212ENST00000596814 PSPHP1O15172 72 aa6.7□□□□□ -1.34
VRK3-212ENST00000596814 CRIPTQ9P021 101 aa6.67□□□□□ -1.34
VRK3-212ENST00000596814 A0A1B0GU33 70 aa6.66□□□□□ -1.34
VRK3-212ENST00000596814 Q5VV11 94 aa6.64□□□□□ -1.35
VRK3-212ENST00000596814 R4GN34 69 aa6.64□□□□□ -1.35
VRK3-212ENST00000596814 M0QZ58 72 aa6.62□□□□□ -1.35
VRK3-212ENST00000596814 KRTAP9-3Q9BYQ3 159 aa6.6□□□□□ -1.35
VRK3-212ENST00000596814 KRTAP13-4Q3LI77 160 aa6.59□□□□□ -1.36
VRK3-212ENST00000596814 SPRR2GQ9BYE4 73 aa6.58□□□□□ -1.36
VRK3-212ENST00000596814 UQCR11O14957 56 aa6.56□□□□□ -1.36
VRK3-212ENST00000596814 KRTAP19-1Q8IUB9 90 aa6.56□□□□□ -1.36
VRK3-212ENST00000596814 SPATA8Q6RVD6 105 aa6.56□□□□□ -1.36
VRK3-212ENST00000596814 A6NED7 52 aa6.51□□□□□ -1.37
VRK3-212ENST00000596814 LINC01554Q52M75 96 aa6.5□□□□□ -1.37
VRK3-212ENST00000596814 A6NN06 94 aa6.49□□□□□ -1.37
VRK3-212ENST00000596814 MIR22HGQ0VDD5 57 aa6.47□□□□□ -1.37
VRK3-212ENST00000596814 CDC42SE1Q9NRR8 79 aa6.47□□□□□ -1.37
VRK3-212ENST00000596814 A0A0D9SG42 100 aa6.45□□□□□ -1.38
VRK3-212ENST00000596814 LCE2BO14633 110 aa6.45□□□□□ -1.38
VRK3-212ENST00000596814 LCE2DQ5TA82 110 aaPredicted RBP6.45□□□□□ -1.38
VRK3-212ENST00000596814 KRTAP19-8Q3LI54 63 aa6.44□□□□□ -1.38
VRK3-212ENST00000596814 A8MU10 97 aa6.43□□□□□ -1.38
VRK3-212ENST00000596814 H3BS24 57 aa6.37□□□□□ -1.39
VRK3-212ENST00000596814 MT1BP07438 61 aa6.36□□□□□ -1.39
VRK3-212ENST00000596814 KRTAP12-1P59990 96 aa6.33□□□□□ -1.4
VRK3-212ENST00000596814 PLAC4Q8WY50 150 aa6.33□□□□□ -1.4
VRK3-212ENST00000596814 SPINT4Q6UDR6 99 aa6.32□□□□□ -1.4
VRK3-212ENST00000596814 KRTAP9-2Q9BYQ4 174 aa6.3□□□□□ -1.4
VRK3-212ENST00000596814 KRTAP12-2P59991 146 aa6.3□□□□□ -1.4
VRK3-212ENST00000596814 USH2AO75445 5202 aa6.27□□□□□ -1.41
VRK3-212ENST00000596814 K7ERS5 55 aa6.24□□□□□ -1.41
VRK3-212ENST00000596814 CAMK2N1Q7Z7J9 78 aa6.2□□□□□ -1.42
VRK3-212ENST00000596814 KRTAP19-6Q3LI70 58 aa6.12□□□□□ -1.43
VRK3-212ENST00000596814 FSIP2Q5CZC0 6907 aa6.12□□□□□ -1.43
VRK3-212ENST00000596814 MT1XP80297 61 aa6.11□□□□□ -1.43
VRK3-212ENST00000596814 SSPOA2VEC9 5147 aa6.11□□□□□ -1.43
VRK3-212ENST00000596814 PRO2289Q9P1D8 64 aa6.1□□□□□ -1.43
VRK3-212ENST00000596814 KRTAP10-5P60370 271 aa6.09□□□□□ -1.43
VRK3-212ENST00000596814 CRCT1Q9UGL9 99 aa6.05□□□□□ -1.44
VRK3-212ENST00000596814 PRAC1Q96KF2 57 aa6.04□□□□□ -1.44
VRK3-212ENST00000596814 C10orf95Q9H7T3 257 aa5.99□□□□□ -1.45
VRK3-212ENST00000596814 ROMO1P60602 79 aa5.93□□□□□ -1.46
VRK3-212ENST00000596814 KRTAP9-6A0A140TA67 174 aa5.89□□□□□ -1.47
VRK3-212ENST00000596814 FCGBPQ9Y6R7 5405 aaPredicted RBP5.89□□□□□ -1.47
VRK3-212ENST00000596814 TNP1P09430 55 aa5.87□□□□□ -1.47
VRK3-212ENST00000596814 KRTAP10-7P60409 375 aaPredicted RBP5.85□□□□□ -1.47
VRK3-212ENST00000596814 KRTAP25-1Q3LHN0 102 aa5.82□□□□□ -1.48
VRK3-212ENST00000596814 KRTAP10-12P60413 245 aa5.8□□□□□ -1.48
VRK3-212ENST00000596814 KRTAP4-8A0A0G2JLE6 195 aa5.66□□□□□ -1.5
VRK3-212ENST00000596814 KRTAP4-8Q9BYQ9 185 aa5.66□□□□□ -1.5
VRK3-212ENST00000596814 LCE3AQ5TA76 89 aa5.65□□□□□ -1.51
VRK3-212ENST00000596814 A0A0A0MQY5 61 aa5.62□□□□□ -1.51
VRK3-212ENST00000596814 MACF1Q9UPN3 7388 aaKnown RBP5.62□□□□□ -1.51
VRK3-212ENST00000596814 KMT2DO14686 5537 aa5.62□□□□□ -1.51
VRK3-212ENST00000596814 KRTAP23-1A1A580 65 aa5.61□□□□□ -1.51
VRK3-212ENST00000596814 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.61□□□□□ -1.51
VRK3-212ENST00000596814 KRTAP8-1Q8IUC2 63 aa5.59□□□□□ -1.51
VRK3-212ENST00000596814 PP632Q6XCG6 107 aa5.57□□□□□ -1.52
VRK3-212ENST00000596814 KRTAP19-5Q3LI72 72 aa5.48□□□□□ -1.53
VRK3-212ENST00000596814 SYNE2Q8WXH0 6885 aaKnown RBP5.47□□□□□ -1.53
VRK3-212ENST00000596814 KRTAP19-7Q3SYF9 63 aa5.45□□□□□ -1.54
VRK3-212ENST00000596814 KRTAP5-9P26371 169 aa5.43□□□□□ -1.54
VRK3-212ENST00000596814 KRTAP12-3P60328 96 aa5.43□□□□□ -1.54
VRK3-212ENST00000596814 KRTAP6-3Q3LI67 103 aa5.43□□□□□ -1.54
VRK3-212ENST00000596814 SPRR2FQ96RM1 72 aa5.43□□□□□ -1.54
VRK3-212ENST00000596814 MT1EP04732 61 aa5.38□□□□□ -1.55
VRK3-212ENST00000596814 NDUFAF8A1L188 74 aa5.37□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 115.9 ms