RNA–Protein interactions for RNA: ENST00000594806.5

TRIM28-204, Transcript of tripartite motif containing 28, humanhuman

TSL 5

Gene TRIM28, Length 861 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-204ENST00000594806 TRAV7A0A075B6U4 112 aa12.08□□□□□ -0.48
TRIM28-204ENST00000594806 FSIP2Q5CZC0 6907 aa12.05□□□□□ -0.48
TRIM28-204ENST00000594806 KRTAP3-3Q9BYR6 98 aa12.02□□□□□ -0.49
TRIM28-204ENST00000594806 LCE2BO14633 110 aa11.97□□□□□ -0.49
TRIM28-204ENST00000594806 NDUFC1O43677 76 aa11.96□□□□□ -0.49
TRIM28-204ENST00000594806 DMAC1Q96GE9 116 aa11.88□□□□□ -0.51
TRIM28-204ENST00000594806 USH2AO75445 5202 aa11.83□□□□□ -0.52
TRIM28-204ENST00000594806 SERP2Q8N6R1 65 aa11.82□□□□□ -0.52
TRIM28-204ENST00000594806 H0YAA0 97 aa11.78□□□□□ -0.52
TRIM28-204ENST00000594806 SNURFQ9Y675 71 aa11.72□□□□□ -0.53
TRIM28-204ENST00000594806 ACYP2P14621 99 aa11.7□□□□□ -0.54
TRIM28-204ENST00000594806 C20orf197Q8N268 126 aa11.69□□□□□ -0.54
TRIM28-204ENST00000594806 CRIPTQ9P021 101 aa11.69□□□□□ -0.54
TRIM28-204ENST00000594806 KRTAP19-1Q8IUB9 90 aa11.68□□□□□ -0.54
TRIM28-204ENST00000594806 SPRR2GQ9BYE4 73 aa11.65□□□□□ -0.54
TRIM28-204ENST00000594806 SSPOA2VEC9 5147 aa11.63□□□□□ -0.55
TRIM28-204ENST00000594806 SPANXA2-OT1Q8N9U9 137 aa11.62□□□□□ -0.55
TRIM28-204ENST00000594806 ADM2Q7Z4H4 148 aa11.57□□□□□ -0.56
TRIM28-204ENST00000594806 COX7CP15954 63 aa11.56□□□□□ -0.56
TRIM28-204ENST00000594806 KRTAP19-6Q3LI70 58 aa11.55□□□□□ -0.56
TRIM28-204ENST00000594806 SPTSSBQ8NFR3 76 aa11.52□□□□□ -0.57
TRIM28-204ENST00000594806 KRTAP19-8Q3LI54 63 aa11.51□□□□□ -0.57
TRIM28-204ENST00000594806 Q5VV11 94 aa11.48□□□□□ -0.57
TRIM28-204ENST00000594806 CHKB-CPT1BH3BT56 60 aa11.46□□□□□ -0.57
TRIM28-204ENST00000594806 MT1BP07438 61 aa11.4□□□□□ -0.58
TRIM28-204ENST00000594806 FCGBPQ9Y6R7 5405 aaPredicted RBP11.35□□□□□ -0.59
TRIM28-204ENST00000594806 ANAPC13Q9BS18 74 aa11.34□□□□□ -0.59
TRIM28-204ENST00000594806 P0C880 135 aa11.33□□□□□ -0.6
TRIM28-204ENST00000594806 KRTAP3-2Q9BYR7 98 aa11.32□□□□□ -0.6
TRIM28-204ENST00000594806 R4GN34 69 aa11.29□□□□□ -0.6
TRIM28-204ENST00000594806 H7BZZ5 65 aa11.27□□□□□ -0.61
TRIM28-204ENST00000594806 KRTAP9-1A8MXZ3 250 aaPredicted RBP11.26□□□□□ -0.61
TRIM28-204ENST00000594806 COA5Q86WW8 74 aa11.2□□□□□ -0.62
TRIM28-204ENST00000594806 CYSTM1Q9H1C7 97 aa11.2□□□□□ -0.62
TRIM28-204ENST00000594806 M0QZ58 72 aa11.18□□□□□ -0.62
TRIM28-204ENST00000594806 A6NN06 94 aa11.16□□□□□ -0.62
TRIM28-204ENST00000594806 KRTAP10-5P60370 271 aa11.1□□□□□ -0.63
TRIM28-204ENST00000594806 PLAC4Q8WY50 150 aa11.06□□□□□ -0.64
TRIM28-204ENST00000594806 CCDC179H3BU77 68 aa11.05□□□□□ -0.64
TRIM28-204ENST00000594806 KRTAP9-7A8MTY7 169 aa11.01□□□□□ -0.65
TRIM28-204ENST00000594806 LINC01554Q52M75 96 aa10.96□□□□□ -0.65
TRIM28-204ENST00000594806 MACF1Q9UPN3 7388 aaKnown RBP10.95□□□□□ -0.66
TRIM28-204ENST00000594806 SEC61GP60059 68 aa10.94□□□□□ -0.66
TRIM28-204ENST00000594806 ATP5EP56381 51 aaPredicted RBP10.93□□□□□ -0.66
TRIM28-204ENST00000594806 PRO2289Q9P1D8 64 aa10.92□□□□□ -0.66
TRIM28-204ENST00000594806 SERP1Q9Y6X1 66 aa10.9□□□□□ -0.66
TRIM28-204ENST00000594806 MT1XP80297 61 aa10.79□□□□□ -0.68
TRIM28-204ENST00000594806 TMEM258P61165 79 aa10.75□□□□□ -0.69
TRIM28-204ENST00000594806 SYNE2Q8WXH0 6885 aaKnown RBP10.75□□□□□ -0.69
TRIM28-204ENST00000594806 KRTAP6-3Q3LI67 103 aa10.72□□□□□ -0.69
TRIM28-204ENST00000594806 KRTAP13-4Q3LI77 160 aa10.72□□□□□ -0.69
TRIM28-204ENST00000594806 A0A1B0GU33 70 aa10.67□□□□□ -0.7
TRIM28-204ENST00000594806 A0A1B0GU69 56 aa10.65□□□□□ -0.7
TRIM28-204ENST00000594806 KRTAP12-2P59991 146 aa10.53□□□□□ -0.72
TRIM28-204ENST00000594806 SPATA8Q6RVD6 105 aa10.52□□□□□ -0.73
TRIM28-204ENST00000594806 PRR15LQ9BU68 103 aa10.5□□□□□ -0.73
TRIM28-204ENST00000594806 LINC01558Q9Y6Z2 57 aa10.46□□□□□ -0.73
TRIM28-204ENST00000594806 A0A0D9SG42 100 aa10.45□□□□□ -0.74
TRIM28-204ENST00000594806 CAMK2N1Q7Z7J9 78 aa10.44□□□□□ -0.74
TRIM28-204ENST00000594806 SMIM26A0A096LP01 95 aa10.4□□□□□ -0.74
TRIM28-204ENST00000594806 KRTAP5-9P26371 169 aa10.39□□□□□ -0.75
TRIM28-204ENST00000594806 SPINT4Q6UDR6 99 aa10.31□□□□□ -0.76
TRIM28-204ENST00000594806 KRTAP12-1P59990 96 aa10.29□□□□□ -0.76
TRIM28-204ENST00000594806 KRTAP10-12P60413 245 aa10.29□□□□□ -0.76
TRIM28-204ENST00000594806 KRTAP10-7P60409 375 aaPredicted RBP10.28□□□□□ -0.76
TRIM28-204ENST00000594806 KRTAP8-1Q8IUC2 63 aa10.26□□□□□ -0.77
TRIM28-204ENST00000594806 KMT2DO14686 5537 aa10.19□□□□□ -0.78
TRIM28-204ENST00000594806 A8MU10 97 aa10.19□□□□□ -0.78
TRIM28-204ENST00000594806 KRTAP4-8A0A0G2JLE6 195 aa10.16□□□□□ -0.78
TRIM28-204ENST00000594806 KRTAP4-8Q9BYQ9 185 aa10.16□□□□□ -0.78
TRIM28-204ENST00000594806 V9GYY9 64 aa10.15□□□□□ -0.78
TRIM28-204ENST00000594806 UQCR11O14957 56 aa10.14□□□□□ -0.79
TRIM28-204ENST00000594806 SPRR2FQ96RM1 72 aa10.14□□□□□ -0.79
TRIM28-204ENST00000594806 MUC12Q9UKN1 5478 aa10.1□□□□□ -0.79
TRIM28-204ENST00000594806 NEBP20929 6669 aa10.09□□□□□ -0.79
TRIM28-204ENST00000594806 PCP4P48539 62 aa10.09□□□□□ -0.79
TRIM28-204ENST00000594806 Q1T7F1 81 aa10.05□□□□□ -0.8
TRIM28-204ENST00000594806 RPS28P62857 69 aaKnown RBP9.92□□□□□ -0.82
TRIM28-204ENST00000594806 MIR22HGQ0VDD5 57 aa9.92□□□□□ -0.82
TRIM28-204ENST00000594806 PSPHP1O15172 72 aa9.9□□□□□ -0.82
TRIM28-204ENST00000594806 SPRR2EP22531 72 aa9.89□□□□□ -0.83
TRIM28-204ENST00000594806 SPRR2BP35325 72 aa9.89□□□□□ -0.83
TRIM28-204ENST00000594806 SPRR2AP35326 72 aa9.89□□□□□ -0.83
TRIM28-204ENST00000594806 MDN1Q9NU22 5596 aa9.86□□□□□ -0.83
TRIM28-204ENST00000594806 LCE1AQ5T7P2 110 aa9.82□□□□□ -0.84
TRIM28-204ENST00000594806 C10orf95Q9H7T3 257 aa9.79□□□□□ -0.84
TRIM28-204ENST00000594806 TNP1P09430 55 aa9.76□□□□□ -0.85
TRIM28-204ENST00000594806 K7ERS5 55 aa9.73□□□□□ -0.85
TRIM28-204ENST00000594806 KRTAP20-1Q3LI63 56 aa9.71□□□□□ -0.86
TRIM28-204ENST00000594806 A6NED7 52 aa9.64□□□□□ -0.87
TRIM28-204ENST00000594806 KRTAP19-7Q3SYF9 63 aa9.64□□□□□ -0.87
TRIM28-204ENST00000594806 KRTAP2-3P0C7H8 128 aa9.6□□□□□ -0.87
TRIM28-204ENST00000594806 KRTAP2-4Q9BYR9 128 aa9.6□□□□□ -0.87
TRIM28-204ENST00000594806 SPRR2DP22532 72 aa9.57□□□□□ -0.88
TRIM28-204ENST00000594806 MT1EP04732 61 aa9.55□□□□□ -0.88
TRIM28-204ENST00000594806 KRTAP19-5Q3LI72 72 aa9.5□□□□□ -0.89
TRIM28-204ENST00000594806 LCE3AQ5TA76 89 aa9.48□□□□□ -0.89
TRIM28-204ENST00000594806 KRTAP25-1Q3LHN0 102 aa9.43□□□□□ -0.9
TRIM28-204ENST00000594806 KRTAP19-3Q7Z4W3 81 aa9.41□□□□□ -0.9
TRIM28-204ENST00000594806 LCE5AQ5TCM9 118 aa9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 71.1 ms