RNA–Protein interactions for RNA: ENST00000591239.1

DNMT1-223, Transcript of DNA methyltransferase 1, human

TSL 2

Gene DNMT1, Length 550 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DNMT1-223	ENST00000591239	LOC101927531	A0A1B0GV80	90 aa		4.31	□□□□□ -1.72
DNMT1-223	ENST00000591239	C5orf47	Q569G3	176 aa		4.31	□□□□□ -1.72
DNMT1-223	ENST00000591239		S4R3F8	94 aa		4.31	□□□□□ -1.72
DNMT1-223	ENST00000591239		H0Y9P7	68 aa		4.29	□□□□□ -1.72
DNMT1-223	ENST00000591239		J3QR89	54 aa		4.29	□□□□□ -1.72
DNMT1-223	ENST00000591239	ATOX1	O00244	68 aa		4.29	□□□□□ -1.72
DNMT1-223	ENST00000591239	LCA10	Q71F78	164 aa		4.29	□□□□□ -1.72
DNMT1-223	ENST00000591239	SSPO	A2VEC9	5147 aa		4.28	□□□□□ -1.72
DNMT1-223	ENST00000591239		K7ERU9	68 aa		4.27	□□□□□ -1.73
DNMT1-223	ENST00000591239	CSAG1	Q6PB30	78 aa		4.27	□□□□□ -1.73
DNMT1-223	ENST00000591239	OCR1	Q9BZK8	76 aa		4.25	□□□□□ -1.73
DNMT1-223	ENST00000591239	FAM236A	A0A1B0GUQ0	79 aa		4.23	□□□□□ -1.73
DNMT1-223	ENST00000591239	FAM236B	A0A1B0GV22	79 aa		4.23	□□□□□ -1.73
DNMT1-223	ENST00000591239	LINC00208	Q96KT6	92 aa		4.23	□□□□□ -1.73
DNMT1-223	ENST00000591239	KRTAP9-4	Q9BYQ2	154 aa		4.23	□□□□□ -1.73
DNMT1-223	ENST00000591239	FCGBP	Q9Y6R7	5405 aa	Predicted RBP	4.22	□□□□□ -1.73
DNMT1-223	ENST00000591239	MP68	P56378	58 aa		4.21	□□□□□ -1.74
DNMT1-223	ENST00000591239	KRTAP9-9	Q9BYP9	154 aa		4.21	□□□□□ -1.74
DNMT1-223	ENST00000591239	KLKP1	Q107X0	134 aa		4.2	□□□□□ -1.74
DNMT1-223	ENST00000591239	SCGB1A1	P11684	91 aa		4.19	□□□□□ -1.74
DNMT1-223	ENST00000591239	KRTAP19-6	Q3LI70	58 aa		4.19	□□□□□ -1.74
DNMT1-223	ENST00000591239		A8MUN3	132 aa		4.18	□□□□□ -1.74
DNMT1-223	ENST00000591239	NDUFC1	O43677	76 aa		4.17	□□□□□ -1.74
DNMT1-223	ENST00000591239		H3BPC8	53 aa		4.16	□□□□□ -1.74
DNMT1-223	ENST00000591239	IMUP	Q9GZP8	106 aa		4.16	□□□□□ -1.74
DNMT1-223	ENST00000591239	MT-ATP8	P03928	68 aa		4.14	□□□□□ -1.75
DNMT1-223	ENST00000591239	SPRR2G	Q9BYE4	73 aa		4.14	□□□□□ -1.75
DNMT1-223	ENST00000591239	LCE5A	Q5TCM9	118 aa		4.12	□□□□□ -1.75
DNMT1-223	ENST00000591239		H0YAA0	97 aa		4.11	□□□□□ -1.75
DNMT1-223	ENST00000591239	LCE1D	Q5T752	114 aa		4.11	□□□□□ -1.75
DNMT1-223	ENST00000591239		Q5VV11	94 aa		4.11	□□□□□ -1.75
DNMT1-223	ENST00000591239	MT1B	P07438	61 aa		4.1	□□□□□ -1.75
DNMT1-223	ENST00000591239	KRTAP19-8	Q3LI54	63 aa		4.1	□□□□□ -1.75
DNMT1-223	ENST00000591239	CRIPT	Q9P021	101 aa		4.09	□□□□□ -1.75
DNMT1-223	ENST00000591239	TRAV7	A0A075B6U4	112 aa		4.08	□□□□□ -1.76
DNMT1-223	ENST00000591239	SMIM20	Q8N5G0	67 aa		4.08	□□□□□ -1.76
DNMT1-223	ENST00000591239	DMAC1	Q96GE9	116 aa		4.08	□□□□□ -1.76
DNMT1-223	ENST00000591239	KRTAP4-8	A0A0G2JLE6	195 aa		4.07	□□□□□ -1.76
DNMT1-223	ENST00000591239	ADM2	Q7Z4H4	148 aa		4.07	□□□□□ -1.76
DNMT1-223	ENST00000591239		A6NN06	94 aa		4.03	□□□□□ -1.76
DNMT1-223	ENST00000591239	MACF1	Q9UPN3	7388 aa	Known RBP	4.02	□□□□□ -1.77
DNMT1-223	ENST00000591239	ACYP2	P14621	99 aa		4.01	□□□□□ -1.77
DNMT1-223	ENST00000591239		P0C880	135 aa		3.99	□□□□□ -1.77
DNMT1-223	ENST00000591239	KRTAP10-5	P60370	271 aa		3.99	□□□□□ -1.77
DNMT1-223	ENST00000591239	SNURF	Q9Y675	71 aa		3.99	□□□□□ -1.77
DNMT1-223	ENST00000591239	C20orf197	Q8N268	126 aa		3.97	□□□□□ -1.77
DNMT1-223	ENST00000591239	SERP2	Q8N6R1	65 aa		3.96	□□□□□ -1.78
DNMT1-223	ENST00000591239		R4GN34	69 aa		3.96	□□□□□ -1.78
DNMT1-223	ENST00000591239	SPTSSB	Q8NFR3	76 aa		3.94	□□□□□ -1.78
DNMT1-223	ENST00000591239	KRTAP6-3	Q3LI67	103 aa		3.93	□□□□□ -1.78
DNMT1-223	ENST00000591239	CHKB-CPT1B	H3BT56	60 aa		3.92	□□□□□ -1.78
DNMT1-223	ENST00000591239		M0QZ58	72 aa		3.92	□□□□□ -1.78
DNMT1-223	ENST00000591239	SPANXA2-OT1	Q8N9U9	137 aa		3.92	□□□□□ -1.78
DNMT1-223	ENST00000591239	PLAC4	Q8WY50	150 aa		3.91	□□□□□ -1.78
DNMT1-223	ENST00000591239	KRTAP4-9	Q9BYQ8	210 aa		3.91	□□□□□ -1.78
DNMT1-223	ENST00000591239	KRTAP4-7	Q9BYR0	210 aa		3.91	□□□□□ -1.78
DNMT1-223	ENST00000591239	SYNE2	Q8WXH0	6885 aa	Known RBP	3.91	□□□□□ -1.78
DNMT1-223	ENST00000591239	ANAPC13	Q9BS18	74 aa		3.89	□□□□□ -1.79
DNMT1-223	ENST00000591239	COX7C	P15954	63 aa		3.88	□□□□□ -1.79
DNMT1-223	ENST00000591239	LINC01554	Q52M75	96 aa		3.87	□□□□□ -1.79
DNMT1-223	ENST00000591239	PRO2289	Q9P1D8	64 aa		3.87	□□□□□ -1.79
DNMT1-223	ENST00000591239	MT1X	P80297	61 aa		3.86	□□□□□ -1.79
DNMT1-223	ENST00000591239	KRTAP4-11	Q9BYQ6	195 aa		3.84	□□□□□ -1.79
DNMT1-223	ENST00000591239	CCDC179	H3BU77	68 aa		3.81	□□□□□ -1.8
DNMT1-223	ENST00000591239	COA5	Q86WW8	74 aa		3.81	□□□□□ -1.8
DNMT1-223	ENST00000591239	CYSTM1	Q9H1C7	97 aa		3.8	□□□□□ -1.8
DNMT1-223	ENST00000591239		H7BZZ5	65 aa		3.79	□□□□□ -1.8
DNMT1-223	ENST00000591239	KRTAP5-9	P26371	169 aa		3.79	□□□□□ -1.8
DNMT1-223	ENST00000591239	KRTAP20-1	Q3LI63	56 aa		3.77	□□□□□ -1.81
DNMT1-223	ENST00000591239	MUC12	Q9UKN1	5478 aa		3.76	□□□□□ -1.81
DNMT1-223	ENST00000591239	KMT2D	O14686	5537 aa		3.76	□□□□□ -1.81
DNMT1-223	ENST00000591239	KRTAP12-2	P59991	146 aa		3.75	□□□□□ -1.81
DNMT1-223	ENST00000591239	KRTAP13-4	Q3LI77	160 aa		3.75	□□□□□ -1.81
DNMT1-223	ENST00000591239	SEC61G	P60059	68 aa		3.73	□□□□□ -1.81
DNMT1-223	ENST00000591239	PRAC1	Q96KF2	57 aa		3.73	□□□□□ -1.81
DNMT1-223	ENST00000591239	MDN1	Q9NU22	5596 aa		3.72	□□□□□ -1.81
DNMT1-223	ENST00000591239	NEB	P20929	6669 aa		3.72	□□□□□ -1.81
DNMT1-223	ENST00000591239	KRTAP4-2	Q9BYR5	136 aa		3.71	□□□□□ -1.82
DNMT1-223	ENST00000591239	SERP1	Q9Y6X1	66 aa		3.71	□□□□□ -1.82
DNMT1-223	ENST00000591239	TMEM258	P61165	79 aa		3.7	□□□□□ -1.82
DNMT1-223	ENST00000591239	KRTAP8-1	Q8IUC2	63 aa		3.7	□□□□□ -1.82
DNMT1-223	ENST00000591239	KRTAP10-7	P60409	375 aa	Predicted RBP	3.69	□□□□□ -1.82
DNMT1-223	ENST00000591239	SPRR2F	Q96RM1	72 aa		3.69	□□□□□ -1.82
DNMT1-223	ENST00000591239	ATP5E	P56381	51 aa	Predicted RBP	3.68	□□□□□ -1.82
DNMT1-223	ENST00000591239	KRTAP10-12	P60413	245 aa		3.67	□□□□□ -1.82
DNMT1-223	ENST00000591239		A0A1B0GU33	70 aa		3.66	□□□□□ -1.82
DNMT1-223	ENST00000591239	SPATA8	Q6RVD6	105 aa		3.65	□□□□□ -1.83
DNMT1-223	ENST00000591239	CAMK2N1	Q7Z7J9	78 aa		3.65	□□□□□ -1.83
DNMT1-223	ENST00000591239		A0A0D9SG42	100 aa		3.64	□□□□□ -1.83
DNMT1-223	ENST00000591239	SPRR2E	P22531	72 aa		3.62	□□□□□ -1.83
DNMT1-223	ENST00000591239	SPRR2B	P35325	72 aa		3.62	□□□□□ -1.83
DNMT1-223	ENST00000591239	SPRR2A	P35326	72 aa		3.62	□□□□□ -1.83
DNMT1-223	ENST00000591239		A0A1B0GU69	56 aa		3.61	□□□□□ -1.83
DNMT1-223	ENST00000591239	LCE1A	Q5T7P2	110 aa		3.61	□□□□□ -1.83
DNMT1-223	ENST00000591239	SPINT4	Q6UDR6	99 aa		3.58	□□□□□ -1.84
DNMT1-223	ENST00000591239	KRTAP12-1	P59990	96 aa		3.57	□□□□□ -1.84
DNMT1-223	ENST00000591239	GPR98	Q8WXG9	6306 aa		3.55	□□□□□ -1.84
DNMT1-223	ENST00000591239	SMIM26	A0A096LP01	95 aa		3.55	□□□□□ -1.84
DNMT1-223	ENST00000591239	KRTAP2-3	P0C7H8	128 aa		3.54	□□□□□ -1.84
DNMT1-223	ENST00000591239	KRTAP2-4	Q9BYR9	128 aa		3.54	□□□□□ -1.84

Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms