RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 H1FX-AS1Q4G0G2 97 aa5.81□□□□□ -1.48
LIG3-213ENST00000590630 OCR1Q9BZK8 76 aa5.79□□□□□ -1.48
LIG3-213ENST00000590630 TRAV22A0A0B4J277 110 aa5.77□□□□□ -1.49
LIG3-213ENST00000590630 MT2AP02795 61 aa5.76□□□□□ -1.49
LIG3-213ENST00000590630 KRTAP9-6A0A140TA67 174 aa5.74□□□□□ -1.49
LIG3-213ENST00000590630 BRK1Q8WUW1 75 aa5.73□□□□□ -1.49
LIG3-213ENST00000590630 V9GYY9 64 aa5.73□□□□□ -1.49
LIG3-213ENST00000590630 LOC101927531A0A1B0GV80 90 aa5.72□□□□□ -1.49
LIG3-213ENST00000590630 Q1T7F1 81 aa5.72□□□□□ -1.49
LIG3-213ENST00000590630 CYP4F30PQ9H0H9 118 aa5.72□□□□□ -1.49
LIG3-213ENST00000590630 MT1FP04733 61 aa5.71□□□□□ -1.5
LIG3-213ENST00000590630 KRTAP10-10P60014 251 aa5.7□□□□□ -1.5
LIG3-213ENST00000590630 C1orf64Q8NEQ6 169 aa5.7□□□□□ -1.5
LIG3-213ENST00000590630 CRCT1Q9UGL9 99 aa5.69□□□□□ -1.5
LIG3-213ENST00000590630 H0Y9P7 68 aa5.68□□□□□ -1.5
LIG3-213ENST00000590630 KRTAP3-1Q9BYR8 98 aa5.68□□□□□ -1.5
LIG3-213ENST00000590630 SEC61GP60059 68 aa5.65□□□□□ -1.5
LIG3-213ENST00000590630 KRTAP9-3Q9BYQ3 159 aa5.64□□□□□ -1.51
LIG3-213ENST00000590630 S4R3F8 94 aa5.64□□□□□ -1.51
LIG3-213ENST00000590630 H3BPC8 53 aa5.63□□□□□ -1.51
LIG3-213ENST00000590630 MP68P56378 58 aa5.62□□□□□ -1.51
LIG3-213ENST00000590630 PMAIP1Q13794 54 aa5.61□□□□□ -1.51
LIG3-213ENST00000590630 USH2AO75445 5202 aa5.6□□□□□ -1.51
LIG3-213ENST00000590630 LCA10Q71F78 164 aa5.6□□□□□ -1.51
LIG3-213ENST00000590630 SPANXA2-OT1Q8N9U9 137 aa5.6□□□□□ -1.51
LIG3-213ENST00000590630 LINC00208Q96KT6 92 aa5.6□□□□□ -1.51
LIG3-213ENST00000590630 CSAG1Q6PB30 78 aa5.58□□□□□ -1.52
LIG3-213ENST00000590630 LCE2BO14633 110 aa5.57□□□□□ -1.52
LIG3-213ENST00000590630 A8MUN3 132 aa5.54□□□□□ -1.52
LIG3-213ENST00000590630 SSPOA2VEC9 5147 aa5.51□□□□□ -1.53
LIG3-213ENST00000590630 PSPHP1O15172 72 aa5.49□□□□□ -1.53
LIG3-213ENST00000590630 Q5VV11 94 aa5.49□□□□□ -1.53
LIG3-213ENST00000590630 KTN1-AS1Q86SY8 53 aa5.45□□□□□ -1.54
LIG3-213ENST00000590630 CHKB-CPT1BH3BT56 60 aa5.44□□□□□ -1.54
LIG3-213ENST00000590630 DMAC1Q96GE9 116 aa5.42□□□□□ -1.54
LIG3-213ENST00000590630 KRTAP19-1Q8IUB9 90 aa5.41□□□□□ -1.54
LIG3-213ENST00000590630 PRR15LQ9BU68 103 aa5.41□□□□□ -1.54
LIG3-213ENST00000590630 H0YAA0 97 aa5.4□□□□□ -1.54
LIG3-213ENST00000590630 CDC42SE1Q9NRR8 79 aa5.4□□□□□ -1.54
LIG3-213ENST00000590630 LINC01558Q9Y6Z2 57 aa5.4□□□□□ -1.54
LIG3-213ENST00000590630 FCGBPQ9Y6R7 5405 aaPredicted RBP5.4□□□□□ -1.55
LIG3-213ENST00000590630 COA5Q86WW8 74 aa5.39□□□□□ -1.55
LIG3-213ENST00000590630 SPRR2GQ9BYE4 73 aa5.38□□□□□ -1.55
LIG3-213ENST00000590630 A6NN06 94 aa5.37□□□□□ -1.55
LIG3-213ENST00000590630 KRTAP19-6Q3LI70 58 aa5.37□□□□□ -1.55
LIG3-213ENST00000590630 CRIPTQ9P021 101 aa5.37□□□□□ -1.55
LIG3-213ENST00000590630 A6NED7 52 aa5.36□□□□□ -1.55
LIG3-213ENST00000590630 ACYP2P14621 99 aa5.32□□□□□ -1.56
LIG3-213ENST00000590630 KRTAP19-8Q3LI54 63 aa5.31□□□□□ -1.56
LIG3-213ENST00000590630 ADM2Q7Z4H4 148 aa5.31□□□□□ -1.56
LIG3-213ENST00000590630 SPTSSBQ8NFR3 76 aa5.31□□□□□ -1.56
LIG3-213ENST00000590630 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.29□□□□□ -1.56
LIG3-213ENST00000590630 A8MU10 97 aa5.28□□□□□ -1.56
LIG3-213ENST00000590630 MT1BP07438 61 aa5.28□□□□□ -1.56
LIG3-213ENST00000590630 MACF1Q9UPN3 7388 aaKnown RBP5.26□□□□□ -1.57
LIG3-213ENST00000590630 P0C880 135 aa5.2□□□□□ -1.58
LIG3-213ENST00000590630 R4GN34 69 aa5.19□□□□□ -1.58
LIG3-213ENST00000590630 KRTAP9-7A8MTY7 169 aa5.18□□□□□ -1.58
LIG3-213ENST00000590630 SYNE2Q8WXH0 6885 aaKnown RBP5.15□□□□□ -1.59
LIG3-213ENST00000590630 M0QZ58 72 aa5.14□□□□□ -1.59
LIG3-213ENST00000590630 KRTAP10-5P60370 271 aa5.14□□□□□ -1.59
LIG3-213ENST00000590630 SPATA8Q6RVD6 105 aa5.14□□□□□ -1.59
LIG3-213ENST00000590630 A0A1B0GU69 56 aa5.09□□□□□ -1.59
LIG3-213ENST00000590630 PLAC4Q8WY50 150 aa5.08□□□□□ -1.6
LIG3-213ENST00000590630 UQCR11O14957 56 aa5.06□□□□□ -1.6
LIG3-213ENST00000590630 LINC01554Q52M75 96 aa5.06□□□□□ -1.6
LIG3-213ENST00000590630 MIR22HGQ0VDD5 57 aa5.04□□□□□ -1.6
LIG3-213ENST00000590630 PRO2289Q9P1D8 64 aa5.04□□□□□ -1.6
LIG3-213ENST00000590630 KRTAP6-3Q3LI67 103 aa5□□□□□ -1.61
LIG3-213ENST00000590630 MT1XP80297 61 aa4.99□□□□□ -1.61
LIG3-213ENST00000590630 PRAC1Q96KF2 57 aa4.99□□□□□ -1.61
LIG3-213ENST00000590630 LOC100996750A0A140TA64 210 aa4.95□□□□□ -1.62
LIG3-213ENST00000590630 KRTAP4-6Q9BYQ5 205 aa4.95□□□□□ -1.62
LIG3-213ENST00000590630 KRTAP13-4Q3LI77 160 aa4.91□□□□□ -1.62
LIG3-213ENST00000590630 KRTAP12-2P59991 146 aa4.87□□□□□ -1.63
LIG3-213ENST00000590630 A0A1B0GU33 70 aa4.85□□□□□ -1.63
LIG3-213ENST00000590630 KRTAP5-9P26371 169 aa4.85□□□□□ -1.63
LIG3-213ENST00000590630 KMT2DO14686 5537 aa4.85□□□□□ -1.63
LIG3-213ENST00000590630 MUC12Q9UKN1 5478 aa4.83□□□□□ -1.64
LIG3-213ENST00000590630 H3BS24 57 aa4.82□□□□□ -1.64
LIG3-213ENST00000590630 KRTAP25-1Q3LHN0 102 aa4.81□□□□□ -1.64
LIG3-213ENST00000590630 NEBP20929 6669 aa4.8□□□□□ -1.64
LIG3-213ENST00000590630 CAMK2N1Q7Z7J9 78 aa4.79□□□□□ -1.64
LIG3-213ENST00000590630 A0A0D9SG42 100 aa4.78□□□□□ -1.64
LIG3-213ENST00000590630 K7ERS5 55 aa4.76□□□□□ -1.65
LIG3-213ENST00000590630 KRTAP10-7P60409 375 aaPredicted RBP4.76□□□□□ -1.65
LIG3-213ENST00000590630 KRTAP10-12P60413 245 aa4.76□□□□□ -1.65
LIG3-213ENST00000590630 KRTAP8-1Q8IUC2 63 aa4.76□□□□□ -1.65
LIG3-213ENST00000590630 MDN1Q9NU22 5596 aa4.76□□□□□ -1.65
LIG3-213ENST00000590630 SPRR2FQ96RM1 72 aa4.73□□□□□ -1.65
LIG3-213ENST00000590630 ROMO1P60602 79 aa4.72□□□□□ -1.65
LIG3-213ENST00000590630 KRTAP4-8A0A0G2JLE6 195 aa4.71□□□□□ -1.66
LIG3-213ENST00000590630 SPINT4Q6UDR6 99 aa4.71□□□□□ -1.66
LIG3-213ENST00000590630 KRTAP4-8Q9BYQ9 185 aa4.71□□□□□ -1.66
LIG3-213ENST00000590630 KRTAP12-1P59990 96 aa4.7□□□□□ -1.66
LIG3-213ENST00000590630 SPRR2EP22531 72 aa4.62□□□□□ -1.67
LIG3-213ENST00000590630 SPRR2BP35325 72 aa4.62□□□□□ -1.67
LIG3-213ENST00000590630 SPRR2AP35326 72 aa4.62□□□□□ -1.67
LIG3-213ENST00000590630 LCE1AQ5T7P2 110 aa4.58□□□□□ -1.68
LIG3-213ENST00000590630 KRTAP20-1Q3LI63 56 aa4.56□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms