RNA–Protein interactions for RNA: ENST00000589706.1

SMAD4-208, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 563 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-208ENST00000589706 KRTAP10-12P60413 245 aa3.4□□□□□ -1.87
SMAD4-208ENST00000589706 LINC00483Q53H64 154 aa3.4□□□□□ -1.87
SMAD4-208ENST00000589706 CLPSL2Q6UWE3 100 aa3.4□□□□□ -1.87
SMAD4-208ENST00000589706 CAMK2N2Q96S95 79 aa3.4□□□□□ -1.87
SMAD4-208ENST00000589706 PRO0255Q9UI72 69 aa3.4□□□□□ -1.87
SMAD4-208ENST00000589706 P0C880 135 aa3.38□□□□□ -1.87
SMAD4-208ENST00000589706 IGFL1Q6UW32 110 aa3.38□□□□□ -1.87
SMAD4-208ENST00000589706 LINC00472Q9H8W2 130 aa3.38□□□□□ -1.87
SMAD4-208ENST00000589706 FAT1Q14517 4588 aa3.37□□□□□ -1.87
SMAD4-208ENST00000589706 NBDYA0A0U1RRE5 68 aa3.37□□□□□ -1.87
SMAD4-208ENST00000589706 TLX1NBP0CAT3 122 aa3.37□□□□□ -1.87
SMAD4-208ENST00000589706 A0A1B0GVX0 72 aa3.36□□□□□ -1.87
SMAD4-208ENST00000589706 IGLV7-43P04211 117 aa3.36□□□□□ -1.87
SMAD4-208ENST00000589706 C15orf56Q8N910 161 aa3.36□□□□□ -1.87
SMAD4-208ENST00000589706 A8MUU9 505 aa3.35□□□□□ -1.87
SMAD4-208ENST00000589706 K7ERS5 55 aa3.35□□□□□ -1.87
SMAD4-208ENST00000589706 KRTAP10-1P60331 282 aa3.35□□□□□ -1.87
SMAD4-208ENST00000589706 RPL37AP61513 92 aaKnown RBP3.35□□□□□ -1.87
SMAD4-208ENST00000589706 LELP1Q5T871 98 aa3.35□□□□□ -1.87
SMAD4-208ENST00000589706 C20orf166-AS1Q96NR2 134 aa3.35□□□□□ -1.87
SMAD4-208ENST00000589706 SPRR1BP22528 89 aa3.33□□□□□ -1.88
SMAD4-208ENST00000589706 KRTAP26-1Q6PEX3 210 aa3.33□□□□□ -1.88
SMAD4-208ENST00000589706 MRPL34Q9BQ48 92 aaKnown RBP3.32□□□□□ -1.88
SMAD4-208ENST00000589706 C8orf17Q9NRJ1 99 aa3.32□□□□□ -1.88
SMAD4-208ENST00000589706 ANAPC11Q9NYG5 84 aa3.32□□□□□ -1.88
SMAD4-208ENST00000589706 LRP2P98164 4655 aa3.31□□□□□ -1.88
SMAD4-208ENST00000589706 DNAH10OSP0CZ25 163 aa3.31□□□□□ -1.88
SMAD4-208ENST00000589706 LCE3CQ5T5A8 94 aa3.31□□□□□ -1.88
SMAD4-208ENST00000589706 Q5W150 140 aa3.31□□□□□ -1.88
SMAD4-208ENST00000589706 LRP1Q07954 4544 aaKnown RBP3.29□□□□□ -1.88
SMAD4-208ENST00000589706 LINC00304Q8N9R0 145 aa3.29□□□□□ -1.88
SMAD4-208ENST00000589706 DEFB130BP0DP73 79 aa3.28□□□□□ -1.88
SMAD4-208ENST00000589706 DEFB130AP0DP74 79 aa3.28□□□□□ -1.88
SMAD4-208ENST00000589706 HTN3P15516 51 aa3.28□□□□□ -1.88
SMAD4-208ENST00000589706 LUZP6Q538Z0 58 aa3.28□□□□□ -1.88
SMAD4-208ENST00000589706 FAT4Q6V0I7 4981 aa3.27□□□□□ -1.89
SMAD4-208ENST00000589706 SPART-AS1P0CW21 52 aa3.27□□□□□ -1.89
SMAD4-208ENST00000589706 KRTAP13-3Q3SY46 172 aa3.27□□□□□ -1.89
SMAD4-208ENST00000589706 Q6ZRN7 208 aaPredicted RBP3.27□□□□□ -1.89
SMAD4-208ENST00000589706 PKHD1L1Q86WI1 4243 aa3.26□□□□□ -1.89
SMAD4-208ENST00000589706 SPINT4Q6UDR6 99 aa3.26□□□□□ -1.89
SMAD4-208ENST00000589706 CRCT1Q9UGL9 99 aa3.26□□□□□ -1.89
SMAD4-208ENST00000589706 MUC2Q02817 5179 aa3.26□□□□□ -1.89
SMAD4-208ENST00000589706 A0A087WTM6 91 aa3.25□□□□□ -1.89
SMAD4-208ENST00000589706 MT1HL1P0DM35 61 aa3.25□□□□□ -1.89
SMAD4-208ENST00000589706 KRTAP11-1Q8IUC1 163 aa3.25□□□□□ -1.89
SMAD4-208ENST00000589706 A0A096LPF7 62 aa3.24□□□□□ -1.89
SMAD4-208ENST00000589706 KRTAP10-6P60371 365 aaPredicted RBP3.24□□□□□ -1.89
SMAD4-208ENST00000589706 KRTAP10-4P60372 401 aaPredicted RBP3.24□□□□□ -1.89
SMAD4-208ENST00000589706 H3BNG1 76 aa3.23□□□□□ -1.89
SMAD4-208ENST00000589706 Q96NJ1 140 aa3.23□□□□□ -1.89
SMAD4-208ENST00000589706 FSIP2Q5CZC0 6907 aa3.23□□□□□ -1.89
SMAD4-208ENST00000589706 FAT3Q8TDW7 4589 aa3.22□□□□□ -1.89
SMAD4-208ENST00000589706 CIRBP-AS1Q8TBR5 109 aa3.21□□□□□ -1.9
SMAD4-208ENST00000589706 A0A0G2JQZ4 141 aa3.2□□□□□ -1.9
SMAD4-208ENST00000589706 A0A1W2PNN7 141 aa3.2□□□□□ -1.9
SMAD4-208ENST00000589706 TNXBP22105 4242 aa3.19□□□□□ -1.9
SMAD4-208ENST00000589706 H0YAA0 97 aa3.18□□□□□ -1.9
SMAD4-208ENST00000589706 Q6ZSA8 131 aa3.18□□□□□ -1.9
SMAD4-208ENST00000589706 SSBP3-AS1Q7Z2R9 100 aa3.18□□□□□ -1.9
SMAD4-208ENST00000589706 LINC01556Q5JQF7 62 aa3.17□□□□□ -1.9
SMAD4-208ENST00000589706 A0A1B0GU33 70 aa3.16□□□□□ -1.9
SMAD4-208ENST00000589706 PSORS1C2Q9UIG4 136 aa3.16□□□□□ -1.9
SMAD4-208ENST00000589706 KRTAP10-5P60370 271 aa3.15□□□□□ -1.91
SMAD4-208ENST00000589706 COX6B2Q6YFQ2 88 aa3.15□□□□□ -1.91
SMAD4-208ENST00000589706 PRLHP81277 87 aa3.14□□□□□ -1.91
SMAD4-208ENST00000589706 H1FX-AS1Q4G0G2 97 aa3.14□□□□□ -1.91
SMAD4-208ENST00000589706 LPAP08519 4548 aa3.1□□□□□ -1.91
SMAD4-208ENST00000589706 DNAH8Q96JB1 4490 aa3.09□□□□□ -1.91
SMAD4-208ENST00000589706 TPRXLQ17RH7 258 aa3.09□□□□□ -1.91
SMAD4-208ENST00000589706 CRIPTQ9P021 101 aa3.09□□□□□ -1.91
SMAD4-208ENST00000589706 LCE1EQ5T753 118 aa3.07□□□□□ -1.92
SMAD4-208ENST00000589706 KRTAP13-1Q8IUC0 172 aa3.07□□□□□ -1.92
SMAD4-208ENST00000589706 KRTAP10-8P60410 259 aa3.06□□□□□ -1.92
SMAD4-208ENST00000589706 RPL37P61927 97 aaKnown RBP3.06□□□□□ -1.92
SMAD4-208ENST00000589706 KRTAP10-7P60409 375 aaPredicted RBP3.05□□□□□ -1.92
SMAD4-208ENST00000589706 A0A096LNI7 61 aa3.04□□□□□ -1.92
SMAD4-208ENST00000589706 LCE3EQ5T5B0 92 aa3.03□□□□□ -1.92
SMAD4-208ENST00000589706 SPINK1P00995 79 aa3□□□□□ -1.93
SMAD4-208ENST00000589706 SPINK6Q6UWN8 80 aa2.98□□□□□ -1.93
SMAD4-208ENST00000589706 KRTAP12-2P59991 146 aa2.97□□□□□ -1.93
SMAD4-208ENST00000589706 PLAC4Q8WY50 150 aa2.96□□□□□ -1.94
SMAD4-208ENST00000589706 C10orf95Q9H7T3 257 aa2.93□□□□□ -1.94
SMAD4-208ENST00000589706 PRO2289Q9P1D8 64 aa2.92□□□□□ -1.94
SMAD4-208ENST00000589706 S4R3F8 94 aa2.88□□□□□ -1.95
SMAD4-208ENST00000589706 SPACA4Q8TDM5 124 aa2.87□□□□□ -1.95
SMAD4-208ENST00000589706 KRTAP9-6A8MVA2 160 aa2.86□□□□□ -1.95
SMAD4-208ENST00000589706 KRTAP13-2Q52LG2 175 aa2.86□□□□□ -1.95
SMAD4-208ENST00000589706 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.86□□□□□ -1.95
SMAD4-208ENST00000589706 SYNE2Q8WXH0 6885 aaKnown RBP2.83□□□□□ -1.96
SMAD4-208ENST00000589706 INE1O15225 51 aa2.82□□□□□ -1.96
SMAD4-208ENST00000589706 KRTAP5-11Q6L8G4 156 aa2.81□□□□□ -1.96
SMAD4-208ENST00000589706 KRTAP4-1Q9BYQ7 146 aa2.81□□□□□ -1.96
SMAD4-208ENST00000589706 MACF1Q9UPN3 7388 aaKnown RBP2.81□□□□□ -1.96
SMAD4-208ENST00000589706 A0A0D9SG42 100 aa2.8□□□□□ -1.96
SMAD4-208ENST00000589706 MT1HP80294 61 aa2.8□□□□□ -1.96
SMAD4-208ENST00000589706 PP632Q6XCG6 107 aa2.8□□□□□ -1.96
SMAD4-208ENST00000589706 MUC17Q685J3 4493 aa2.8□□□□□ -1.96
SMAD4-208ENST00000589706 SSPOA2VEC9 5147 aa2.79□□□□□ -1.96
SMAD4-208ENST00000589706 KRTAP13-4Q3LI77 160 aa2.79□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 213.8 ms