RNA–Protein interactions for RNA: ENST00000584063.5

CDK5RAP3-231, Transcript of CDK5 regulatory subunit associated protein 3, human

TSL 1 (best)

Gene CDK5RAP3, Length 2,759 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDK5RAP3-231	ENST00000584063	TYMSOS	Q8TAI1	123 aa		6.47	□□□□□ -1.37
CDK5RAP3-231	ENST00000584063	DMBT1	Q9UGM3	2413 aa	Predicted RBP	6.46	□□□□□ -1.37
CDK5RAP3-231	ENST00000584063	SSBP3-AS1	Q7Z2R9	100 aa		6.46	□□□□□ -1.38
CDK5RAP3-231	ENST00000584063		Q8N1X5	172 aa		6.45	□□□□□ -1.38
CDK5RAP3-231	ENST00000584063	KIAA1109	Q2LD37	5005 aa		6.44	□□□□□ -1.38
CDK5RAP3-231	ENST00000584063	LRP1	Q07954	4544 aa	Known RBP	6.4	□□□□□ -1.39
CDK5RAP3-231	ENST00000584063	HSPG2	P98160	4391 aa		6.39	□□□□□ -1.39
CDK5RAP3-231	ENST00000584063	C9orf92	A6NGG3	77 aa		6.36	□□□□□ -1.39
CDK5RAP3-231	ENST00000584063	KRTAP17-1	Q9BYP8	105 aa		6.36	□□□□□ -1.39
CDK5RAP3-231	ENST00000584063	RYR1	P21817	5038 aa		6.35	□□□□□ -1.39
CDK5RAP3-231	ENST00000584063	MYCBP2	O75592	4640 aa		6.35	□□□□□ -1.39
CDK5RAP3-231	ENST00000584063		Q5VSD8	79 aa		6.35	□□□□□ -1.39
CDK5RAP3-231	ENST00000584063	KRTAP10-4	P60372	401 aa	Predicted RBP	6.33	□□□□□ -1.4
CDK5RAP3-231	ENST00000584063		A0A1B0GU33	70 aa		6.32	□□□□□ -1.4
CDK5RAP3-231	ENST00000584063	PKHD1L1	Q86WI1	4243 aa		6.28	□□□□□ -1.4
CDK5RAP3-231	ENST00000584063	KRTAP4-5	Q9BYR2	181 aa		6.18	□□□□□ -1.42
CDK5RAP3-231	ENST00000584063	FAT3	Q8TDW7	4589 aa		6.18	□□□□□ -1.42
CDK5RAP3-231	ENST00000584063		R4GN34	69 aa		6.16	□□□□□ -1.42
CDK5RAP3-231	ENST00000584063	TNXB	P22105	4242 aa		6.16	□□□□□ -1.42
CDK5RAP3-231	ENST00000584063	KRTAP3-1	Q9BYR8	98 aa		6.15	□□□□□ -1.43
CDK5RAP3-231	ENST00000584063		H0YAA0	97 aa		6.14	□□□□□ -1.43
CDK5RAP3-231	ENST00000584063	ABCA13	Q86UQ4	5058 aa		6.13	□□□□□ -1.43
CDK5RAP3-231	ENST00000584063	KRTAP3-3	Q9BYR6	98 aa		6.13	□□□□□ -1.43
CDK5RAP3-231	ENST00000584063	KRTAP3-2	Q9BYR7	98 aa		6.13	□□□□□ -1.43
CDK5RAP3-231	ENST00000584063	TPRXL	Q17RH7	258 aa		6.12	□□□□□ -1.43
CDK5RAP3-231	ENST00000584063	KRTAP10-8	P60410	259 aa		6.11	□□□□□ -1.43
CDK5RAP3-231	ENST00000584063	RPS29	P62273	56 aa	Known RBP	6.11	□□□□□ -1.43
CDK5RAP3-231	ENST00000584063	PRO2289	Q9P1D8	64 aa		6.07	□□□□□ -1.44
CDK5RAP3-231	ENST00000584063	BIRC6	Q9NR09	4857 aa		6.06	□□□□□ -1.44
CDK5RAP3-231	ENST00000584063	HERC2	O95714	4834 aa		6.03	□□□□□ -1.44
CDK5RAP3-231	ENST00000584063	LPA	P08519	4548 aa		6.03	□□□□□ -1.44
CDK5RAP3-231	ENST00000584063	MT1HL1	P0DM35	61 aa		6.03	□□□□□ -1.44
CDK5RAP3-231	ENST00000584063	H1FX-AS1	Q4G0G2	97 aa		6	□□□□□ -1.45
CDK5RAP3-231	ENST00000584063		A0A0D9SG42	100 aa		6	□□□□□ -1.45
CDK5RAP3-231	ENST00000584063	C10orf95	Q9H7T3	257 aa		5.99	□□□□□ -1.45
CDK5RAP3-231	ENST00000584063	COX6B2	Q6YFQ2	88 aa		5.96	□□□□□ -1.45
CDK5RAP3-231	ENST00000584063	PCLO	Q9Y6V0	5065 aa		5.95	□□□□□ -1.46
CDK5RAP3-231	ENST00000584063	LRP2	P98164	4655 aa		5.95	□□□□□ -1.46
CDK5RAP3-231	ENST00000584063	XP32	Q5T750	250 aa		5.9	□□□□□ -1.47
CDK5RAP3-231	ENST00000584063	KRTAP13-4	Q3LI77	160 aa		5.89	□□□□□ -1.47
CDK5RAP3-231	ENST00000584063	HERC1	Q15751	4861 aa		5.86	□□□□□ -1.47
CDK5RAP3-231	ENST00000584063	RPL37	P61927	97 aa	Known RBP	5.83	□□□□□ -1.48
CDK5RAP3-231	ENST00000584063	KRTAP10-6	P60371	365 aa	Predicted RBP	5.83	□□□□□ -1.48
CDK5RAP3-231	ENST00000584063	MUC2	Q02817	5179 aa		5.8	□□□□□ -1.48
CDK5RAP3-231	ENST00000584063	LCE2A	Q5TA79	106 aa	Predicted RBP	5.78	□□□□□ -1.48
CDK5RAP3-231	ENST00000584063	LCE2C	Q5TA81	110 aa		5.78	□□□□□ -1.48
CDK5RAP3-231	ENST00000584063	PLAC4	Q8WY50	150 aa		5.77	□□□□□ -1.49
CDK5RAP3-231	ENST00000584063		S4R3F8	94 aa		5.77	□□□□□ -1.49
CDK5RAP3-231	ENST00000584063	KRTAP12-2	P59991	146 aa		5.69	□□□□□ -1.5
CDK5RAP3-231	ENST00000584063	LCE2D	Q5TA82	110 aa	Predicted RBP	5.69	□□□□□ -1.5
CDK5RAP3-231	ENST00000584063	HMCN2	Q8NDA2	5059 aa		5.62	□□□□□ -1.51
CDK5RAP3-231	ENST00000584063	RNF213	Q63HN8	5207 aa		5.6	□□□□□ -1.51
CDK5RAP3-231	ENST00000584063	KRTAP12-1	P59990	96 aa		5.57	□□□□□ -1.52
CDK5RAP3-231	ENST00000584063	KRTAP4-1	Q9BYQ7	146 aa		5.55	□□□□□ -1.52
CDK5RAP3-231	ENST00000584063	MUC17	Q685J3	4493 aa		5.55	□□□□□ -1.52
CDK5RAP3-231	ENST00000584063	UBR4	Q5T4S7	5183 aa		5.55	□□□□□ -1.52
CDK5RAP3-231	ENST00000584063	INE1	O15225	51 aa		5.53	□□□□□ -1.52
CDK5RAP3-231	ENST00000584063	FAT4	Q6V0I7	4981 aa		5.49	□□□□□ -1.53
CDK5RAP3-231	ENST00000584063		M0QZ58	72 aa		5.49	□□□□□ -1.53
CDK5RAP3-231	ENST00000584063	LOR	P23490	312 aa	Predicted RBP	5.45	□□□□□ -1.54
CDK5RAP3-231	ENST00000584063	LCE2B	O14633	110 aa		5.44	□□□□□ -1.54
CDK5RAP3-231	ENST00000584063	KRTAP19-2	Q3LHN2	52 aa		5.28	□□□□□ -1.56
CDK5RAP3-231	ENST00000584063	FLG	P20930	4061 aa	Predicted RBP	5.28	□□□□□ -1.56
CDK5RAP3-231	ENST00000584063		M0R2T5	61 aa		5.27	□□□□□ -1.57
CDK5RAP3-231	ENST00000584063	PP632	Q6XCG6	107 aa		5.19	□□□□□ -1.58
CDK5RAP3-231	ENST00000584063	MT1H	P80294	61 aa		5.09	□□□□□ -1.6
CDK5RAP3-231	ENST00000584063	KRTAP10-10	P60014	251 aa		5	□□□□□ -1.61
CDK5RAP3-231	ENST00000584063	SPRR5	A0A1B0GTR4	108 aa		4.95	□□□□□ -1.62
CDK5RAP3-231	ENST00000584063	MT1F	P04733	61 aa		4.92	□□□□□ -1.62
CDK5RAP3-231	ENST00000584063	MT2A	P02795	61 aa		4.91	□□□□□ -1.62
CDK5RAP3-231	ENST00000584063	TNP1	P09430	55 aa		4.9	□□□□□ -1.63
CDK5RAP3-231	ENST00000584063	KRTAP9-8	Q9BYQ0	159 aa		4.89	□□□□□ -1.63
CDK5RAP3-231	ENST00000584063	USH2A	O75445	5202 aa		4.86	□□□□□ -1.63
CDK5RAP3-231	ENST00000584063	FSIP2	Q5CZC0	6907 aa		4.86	□□□□□ -1.63
CDK5RAP3-231	ENST00000584063	KRTAP19-1	Q8IUB9	90 aa		4.85	□□□□□ -1.63
CDK5RAP3-231	ENST00000584063	SPRR2G	Q9BYE4	73 aa		4.79	□□□□□ -1.64
CDK5RAP3-231	ENST00000584063	LCE3A	Q5TA76	89 aa		4.73	□□□□□ -1.65
CDK5RAP3-231	ENST00000584063	KRTAP9-3	Q9BYQ3	159 aa		4.69	□□□□□ -1.66
CDK5RAP3-231	ENST00000584063	KRTAP2-2	Q9BYT5	123 aa		4.68	□□□□□ -1.66
CDK5RAP3-231	ENST00000584063	MT1B	P07438	61 aa		4.63	□□□□□ -1.67
CDK5RAP3-231	ENST00000584063	KRTAP19-8	Q3LI54	63 aa		4.6	□□□□□ -1.67
CDK5RAP3-231	ENST00000584063	KMT2D	O14686	5537 aa		4.57	□□□□□ -1.68
CDK5RAP3-231	ENST00000584063	KRTAP10-5	P60370	271 aa		4.57	□□□□□ -1.68
CDK5RAP3-231	ENST00000584063	MT1X	P80297	61 aa		4.56	□□□□□ -1.68
CDK5RAP3-231	ENST00000584063	LCE5A	Q5TCM9	118 aa		4.54	□□□□□ -1.68
CDK5RAP3-231	ENST00000584063	KRTAP10-7	P60409	375 aa	Predicted RBP	4.51	□□□□□ -1.69
CDK5RAP3-231	ENST00000584063	SSPO	A2VEC9	5147 aa		4.49	□□□□□ -1.69
CDK5RAP3-231	ENST00000584063	KRTAP12-3	P60328	96 aa		4.44	□□□□□ -1.7
CDK5RAP3-231	ENST00000584063	KRTAP10-12	P60413	245 aa		4.44	□□□□□ -1.7
CDK5RAP3-231	ENST00000584063	KRTAP8-1	Q8IUC2	63 aa		4.42	□□□□□ -1.7
CDK5RAP3-231	ENST00000584063	LCE1F	Q5T754	118 aa		4.4	□□□□□ -1.71
CDK5RAP3-231	ENST00000584063	LCE1A	Q5T7P2	110 aa		4.38	□□□□□ -1.71
CDK5RAP3-231	ENST00000584063	LCE1E	Q5T753	118 aa		4.36	□□□□□ -1.71
CDK5RAP3-231	ENST00000584063	KRTAP4-8	A0A0G2JLE6	195 aa		4.31	□□□□□ -1.72
CDK5RAP3-231	ENST00000584063	KRTAP4-8	Q9BYQ9	185 aa		4.31	□□□□□ -1.72
CDK5RAP3-231	ENST00000584063	KRTAP19-5	Q3LI72	72 aa		4.28	□□□□□ -1.72
CDK5RAP3-231	ENST00000584063	FCGBP	Q9Y6R7	5405 aa	Predicted RBP	4.27	□□□□□ -1.73
CDK5RAP3-231	ENST00000584063	KRTAP6-3	Q3LI67	103 aa		4.23	□□□□□ -1.73
CDK5RAP3-231	ENST00000584063	KRTAP9-2	Q9BYQ4	174 aa		4.23	□□□□□ -1.73
CDK5RAP3-231	ENST00000584063	KRTAP9-4	Q9BYQ2	154 aa		4.2	□□□□□ -1.74

Retrieved 100 of 20,778 RNA–protein pairs in 73 ms