RNA–Protein interactions for RNA: ENST00000582448.5

SS18-221, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 585 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-221ENST00000582448 H3BPC8 53 aa5.66□□□□□ -1.5
SS18-221ENST00000582448 KRTAP10-5P60370 271 aa5.66□□□□□ -1.5
SS18-221ENST00000582448 KLKP1Q107X0 134 aa5.66□□□□□ -1.5
SS18-221ENST00000582448 TPRXLQ17RH7 258 aa5.66□□□□□ -1.5
SS18-221ENST00000582448 TRAV22A0A0B4J277 110 aa5.65□□□□□ -1.5
SS18-221ENST00000582448 H0Y9P7 68 aa5.65□□□□□ -1.5
SS18-221ENST00000582448 CRCT1Q9UGL9 99 aa5.65□□□□□ -1.5
SS18-221ENST00000582448 NOTCH2NLQ7Z3S9 236 aa5.64□□□□□ -1.51
SS18-221ENST00000582448 SNURFQ9Y675 71 aa5.64□□□□□ -1.51
SS18-221ENST00000582448 TMEM258P61165 79 aa5.61□□□□□ -1.51
SS18-221ENST00000582448 FP248Q71RG6 208 aaPredicted RBP5.61□□□□□ -1.51
SS18-221ENST00000582448 LINC00208Q96KT6 92 aa5.61□□□□□ -1.51
SS18-221ENST00000582448 KRTAP10-12P60413 245 aa5.59□□□□□ -1.51
SS18-221ENST00000582448 C1orf64Q8NEQ6 169 aa5.59□□□□□ -1.51
SS18-221ENST00000582448 FSIP2Q5CZC0 6907 aa5.58□□□□□ -1.52
SS18-221ENST00000582448 LOC101927531A0A1B0GV80 90 aa5.57□□□□□ -1.52
SS18-221ENST00000582448 KRTAP16-1A8MUX0 517 aa5.57□□□□□ -1.52
SS18-221ENST00000582448 KRTAP4-1Q9BYQ7 146 aa5.57□□□□□ -1.52
SS18-221ENST00000582448 C9orf92A6NGG3 77 aa5.56□□□□□ -1.52
SS18-221ENST00000582448 H7BZZ5 65 aa5.56□□□□□ -1.52
SS18-221ENST00000582448 ATP5EP56381 51 aaPredicted RBP5.56□□□□□ -1.52
SS18-221ENST00000582448 ZCCHC13Q8WW36 166 aaKnown RBP5.55□□□□□ -1.52
SS18-221ENST00000582448 FAM236DA0A1B0GTK5 79 aa5.54□□□□□ -1.52
SS18-221ENST00000582448 FAM236CP0DP71 79 aa5.54□□□□□ -1.52
SS18-221ENST00000582448 CYSTM1Q9H1C7 97 aa5.54□□□□□ -1.52
SS18-221ENST00000582448 KRTAP13-3Q3SY46 172 aa5.53□□□□□ -1.52
SS18-221ENST00000582448 A8MUU9 505 aa5.5□□□□□ -1.53
SS18-221ENST00000582448 Q5W150 140 aa5.5□□□□□ -1.53
SS18-221ENST00000582448 C20orf166-AS1Q96NR2 134 aa5.5□□□□□ -1.53
SS18-221ENST00000582448 SPANXA2-OT1Q8N9U9 137 aa5.48□□□□□ -1.53
SS18-221ENST00000582448 PCOTHQ58A44 107 aa5.47□□□□□ -1.53
SS18-221ENST00000582448 ATP11AUNQ6ZP68 121 aa5.46□□□□□ -1.54
SS18-221ENST00000582448 Q75L30 129 aa5.46□□□□□ -1.54
SS18-221ENST00000582448 CYP4F30PQ9H0H9 118 aa5.46□□□□□ -1.54
SS18-221ENST00000582448 C7orf65Q6ZTY9 151 aa5.44□□□□□ -1.54
SS18-221ENST00000582448 SERP1Q9Y6X1 66 aa5.44□□□□□ -1.54
SS18-221ENST00000582448 RPS28P62857 69 aaKnown RBP5.43□□□□□ -1.54
SS18-221ENST00000582448 MT1HP80294 61 aa5.42□□□□□ -1.54
SS18-221ENST00000582448 RPL37P61927 97 aaKnown RBP5.4□□□□□ -1.54
SS18-221ENST00000582448 M0R2T5 61 aa5.38□□□□□ -1.55
SS18-221ENST00000582448 HRES1P13985 223 aa5.38□□□□□ -1.55
SS18-221ENST00000582448 KRTAP19-2Q3LHN2 52 aa5.38□□□□□ -1.55
SS18-221ENST00000582448 KRTAP9-6A8MVA2 160 aa5.36□□□□□ -1.55
SS18-221ENST00000582448 SPINK7P58062 85 aa5.35□□□□□ -1.55
SS18-221ENST00000582448 ACYP2P14621 99 aa5.34□□□□□ -1.55
SS18-221ENST00000582448 LCE3CQ5T5A8 94 aa5.34□□□□□ -1.55
SS18-221ENST00000582448 SMIM26A0A096LP01 95 aa5.31□□□□□ -1.56
SS18-221ENST00000582448 A8MUN3 132 aa5.31□□□□□ -1.56
SS18-221ENST00000582448 COX6B2Q6YFQ2 88 aa5.31□□□□□ -1.56
SS18-221ENST00000582448 DMAC1Q96GE9 116 aa5.31□□□□□ -1.56
SS18-221ENST00000582448 CHKB-CPT1BH3BT56 60 aa5.3□□□□□ -1.56
SS18-221ENST00000582448 COA5Q86WW8 74 aa5.29□□□□□ -1.56
SS18-221ENST00000582448 C4orf26Q17RF5 130 aa5.28□□□□□ -1.56
SS18-221ENST00000582448 V9GYY9 64 aa5.24□□□□□ -1.57
SS18-221ENST00000582448 SPTSSBQ8NFR3 76 aa5.22□□□□□ -1.57
SS18-221ENST00000582448 FLGP20930 4061 aaPredicted RBP5.2□□□□□ -1.58
SS18-221ENST00000582448 PRAC1Q96KF2 57 aa5.2□□□□□ -1.58
SS18-221ENST00000582448 KRTAP5-1Q6L8H4 278 aa5.19□□□□□ -1.58
SS18-221ENST00000582448 RBM12B-AS1Q9P1G2 102 aa5.19□□□□□ -1.58
SS18-221ENST00000582448 Q1T7F1 81 aa5.17□□□□□ -1.58
SS18-221ENST00000582448 NDUFAF8A1L188 74 aa5.15□□□□□ -1.59
SS18-221ENST00000582448 H1FX-AS1Q4G0G2 97 aa5.11□□□□□ -1.59
SS18-221ENST00000582448 PRR15LQ9BU68 103 aa5.11□□□□□ -1.59
SS18-221ENST00000582448 LINC01558Q9Y6Z2 57 aa5.1□□□□□ -1.59
SS18-221ENST00000582448 SEC61GP60059 68 aa5.09□□□□□ -1.59
SS18-221ENST00000582448 S4R3F8 94 aa5.08□□□□□ -1.6
SS18-221ENST00000582448 SSPOA2VEC9 5147 aa5.07□□□□□ -1.6
SS18-221ENST00000582448 PSPHP1O15172 72 aa5.07□□□□□ -1.6
SS18-221ENST00000582448 USH2AO75445 5202 aa5.07□□□□□ -1.6
SS18-221ENST00000582448 A0A1B0GU69 56 aa5.06□□□□□ -1.6
SS18-221ENST00000582448 FCGBPQ9Y6R7 5405 aaPredicted RBP5.02□□□□□ -1.61
SS18-221ENST00000582448 LCA10Q71F78 164 aa5.02□□□□□ -1.61
SS18-221ENST00000582448 Q5VV11 94 aa4.99□□□□□ -1.61
SS18-221ENST00000582448 CSAG1Q6PB30 78 aa4.99□□□□□ -1.61
SS18-221ENST00000582448 A6NED7 52 aa4.97□□□□□ -1.61
SS18-221ENST00000582448 MT2AP02795 61 aa4.97□□□□□ -1.61
SS18-221ENST00000582448 KRTAP10-10P60014 251 aa4.96□□□□□ -1.62
SS18-221ENST00000582448 KRTAP4-4Q9BYR3 166 aa4.96□□□□□ -1.62
SS18-221ENST00000582448 MT1FP04733 61 aa4.94□□□□□ -1.62
SS18-221ENST00000582448 KRTAP5-4Q6L8H1 288 aa4.93□□□□□ -1.62
SS18-221ENST00000582448 BRK1Q8WUW1 75 aa4.93□□□□□ -1.62
SS18-221ENST00000582448 UQCR11O14957 56 aa4.92□□□□□ -1.62
SS18-221ENST00000582448 SYNE2Q8WXH0 6885 aaKnown RBP4.92□□□□□ -1.62
SS18-221ENST00000582448 MACF1Q9UPN3 7388 aaKnown RBP4.9□□□□□ -1.62
SS18-221ENST00000582448 A0A1B0GU33 70 aa4.88□□□□□ -1.63
SS18-221ENST00000582448 LCE3EQ5T5B0 92 aa4.87□□□□□ -1.63
SS18-221ENST00000582448 MIR22HGQ0VDD5 57 aa4.85□□□□□ -1.63
SS18-221ENST00000582448 CDC42SE1Q9NRR8 79 aa4.85□□□□□ -1.63
SS18-221ENST00000582448 H0YAA0 97 aa4.84□□□□□ -1.63
SS18-221ENST00000582448 ADM2Q7Z4H4 148 aa4.84□□□□□ -1.63
SS18-221ENST00000582448 PRO0628Q9UI54 55 aa4.84□□□□□ -1.63
SS18-221ENST00000582448 KRTAP19-6Q3LI70 58 aa4.82□□□□□ -1.64
SS18-221ENST00000582448 SPATA8Q6RVD6 105 aa4.81□□□□□ -1.64
SS18-221ENST00000582448 KRTAP6-3Q3LI67 103 aa4.8□□□□□ -1.64
SS18-221ENST00000582448 KRTAP5-9P26371 169 aa4.78□□□□□ -1.64
SS18-221ENST00000582448 P0C880 135 aa4.76□□□□□ -1.65
SS18-221ENST00000582448 M0QZ58 72 aa4.74□□□□□ -1.65
SS18-221ENST00000582448 K7ERS5 55 aa4.73□□□□□ -1.65
SS18-221ENST00000582448 R4GN34 69 aa4.71□□□□□ -1.66
SS18-221ENST00000582448 A8MU10 97 aa4.69□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms