RNA–Protein interactions for RNA: ENST00000581021.5

SS18-218, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 588 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-218ENST00000581021 KRTAP9-1A8MXZ3 250 aaPredicted RBP9.16□□□□□ -0.94
SS18-218ENST00000581021 MP68P56378 58 aa9.14□□□□□ -0.95
SS18-218ENST00000581021 MT-ATP8P03928 68 aa9.11□□□□□ -0.95
SS18-218ENST00000581021 A8MUN3 132 aa9.06□□□□□ -0.96
SS18-218ENST00000581021 SCGB1A1P11684 91 aa9.06□□□□□ -0.96
SS18-218ENST00000581021 SPRR2GQ9BYE4 73 aa9.06□□□□□ -0.96
SS18-218ENST00000581021 K7ERU9 68 aa9.05□□□□□ -0.96
SS18-218ENST00000581021 H3BPC8 53 aa9.03□□□□□ -0.96
SS18-218ENST00000581021 IMUPQ9GZP8 106 aa9.03□□□□□ -0.96
SS18-218ENST00000581021 MT1BP07438 61 aa9.02□□□□□ -0.97
SS18-218ENST00000581021 NDUFC1O43677 76 aa9.01□□□□□ -0.97
SS18-218ENST00000581021 KRTAP9-7A8MTY7 169 aa8.99□□□□□ -0.97
SS18-218ENST00000581021 KRTAP19-8Q3LI54 63 aa8.99□□□□□ -0.97
SS18-218ENST00000581021 MACF1Q9UPN3 7388 aaKnown RBP8.94□□□□□ -0.98
SS18-218ENST00000581021 H0YAA0 97 aa8.93□□□□□ -0.98
SS18-218ENST00000581021 DMAC1Q96GE9 116 aa8.93□□□□□ -0.98
SS18-218ENST00000581021 Q5VV11 94 aa8.91□□□□□ -0.98
SS18-218ENST00000581021 TRAV7A0A075B6U4 112 aa8.89□□□□□ -0.99
SS18-218ENST00000581021 CRIPTQ9P021 101 aa8.87□□□□□ -0.99
SS18-218ENST00000581021 ADM2Q7Z4H4 148 aa8.86□□□□□ -0.99
SS18-218ENST00000581021 SMIM20Q8N5G0 67 aa8.83□□□□□ -1
SS18-218ENST00000581021 SYNE2Q8WXH0 6885 aaKnown RBP8.81□□□□□ -1
SS18-218ENST00000581021 A6NN06 94 aa8.75□□□□□ -1.01
SS18-218ENST00000581021 P0C880 135 aa8.74□□□□□ -1.01
SS18-218ENST00000581021 SNURFQ9Y675 71 aa8.74□□□□□ -1.01
SS18-218ENST00000581021 KRTAP10-5P60370 271 aa8.73□□□□□ -1.01
SS18-218ENST00000581021 KRTAP3-2Q9BYR7 98 aa8.72□□□□□ -1.01
SS18-218ENST00000581021 ACYP2P14621 99 aa8.66□□□□□ -1.02
SS18-218ENST00000581021 SERP2Q8N6R1 65 aa8.65□□□□□ -1.02
SS18-218ENST00000581021 C20orf197Q8N268 126 aa8.63□□□□□ -1.03
SS18-218ENST00000581021 KRTAP6-3Q3LI67 103 aa8.58□□□□□ -1.04
SS18-218ENST00000581021 R4GN34 69 aa8.57□□□□□ -1.04
SS18-218ENST00000581021 M0QZ58 72 aa8.55□□□□□ -1.04
SS18-218ENST00000581021 SPANXA2-OT1Q8N9U9 137 aa8.55□□□□□ -1.04
SS18-218ENST00000581021 MT1XP80297 61 aa8.5□□□□□ -1.05
SS18-218ENST00000581021 CHKB-CPT1BH3BT56 60 aa8.49□□□□□ -1.05
SS18-218ENST00000581021 SPTSSBQ8NFR3 76 aa8.48□□□□□ -1.05
SS18-218ENST00000581021 PLAC4Q8WY50 150 aa8.43□□□□□ -1.06
SS18-218ENST00000581021 COX7CP15954 63 aa8.42□□□□□ -1.06
SS18-218ENST00000581021 LINC01554Q52M75 96 aa8.42□□□□□ -1.06
SS18-218ENST00000581021 CYSTM1Q9H1C7 97 aa8.41□□□□□ -1.06
SS18-218ENST00000581021 PRO2289Q9P1D8 64 aa8.35□□□□□ -1.07
SS18-218ENST00000581021 COA5Q86WW8 74 aa8.34□□□□□ -1.07
SS18-218ENST00000581021 H7BZZ5 65 aa8.31□□□□□ -1.08
SS18-218ENST00000581021 NEBP20929 6669 aa8.29□□□□□ -1.08
SS18-218ENST00000581021 KRTAP5-9P26371 169 aa8.29□□□□□ -1.08
SS18-218ENST00000581021 MUC12Q9UKN1 5478 aa8.28□□□□□ -1.08
SS18-218ENST00000581021 KRTAP13-4Q3LI77 160 aa8.27□□□□□ -1.09
SS18-218ENST00000581021 KMT2DO14686 5537 aa8.27□□□□□ -1.09
SS18-218ENST00000581021 KRTAP12-2P59991 146 aa8.19□□□□□ -1.1
SS18-218ENST00000581021 ANAPC13Q9BS18 74 aa8.18□□□□□ -1.1
SS18-218ENST00000581021 KRTAP10-7P60409 375 aaPredicted RBP8.11□□□□□ -1.11
SS18-218ENST00000581021 CCDC179H3BU77 68 aa8.1□□□□□ -1.11
SS18-218ENST00000581021 KRTAP4-8A0A0G2JLE6 195 aa8.08□□□□□ -1.12
SS18-218ENST00000581021 KRTAP4-8Q9BYQ9 185 aa8.08□□□□□ -1.12
SS18-218ENST00000581021 MDN1Q9NU22 5596 aa8.08□□□□□ -1.12
SS18-218ENST00000581021 KRTAP8-1Q8IUC2 63 aa8.06□□□□□ -1.12
SS18-218ENST00000581021 SPRR2FQ96RM1 72 aa8.05□□□□□ -1.12
SS18-218ENST00000581021 KRTAP10-12P60413 245 aa8.04□□□□□ -1.12
SS18-218ENST00000581021 SEC61GP60059 68 aa8□□□□□ -1.13
SS18-218ENST00000581021 SERP1Q9Y6X1 66 aa8□□□□□ -1.13
SS18-218ENST00000581021 SPATA8Q6RVD6 105 aa7.98□□□□□ -1.13
SS18-218ENST00000581021 A0A0D9SG42 100 aa7.95□□□□□ -1.14
SS18-218ENST00000581021 A0A1B0GU33 70 aa7.94□□□□□ -1.14
SS18-218ENST00000581021 KRTAP20-1Q3LI63 56 aa7.9□□□□□ -1.14
SS18-218ENST00000581021 CAMK2N1Q7Z7J9 78 aa7.9□□□□□ -1.14
SS18-218ENST00000581021 SPRR2EP22531 72 aa7.89□□□□□ -1.15
SS18-218ENST00000581021 SPRR2BP35325 72 aa7.89□□□□□ -1.15
SS18-218ENST00000581021 SPRR2AP35326 72 aa7.89□□□□□ -1.15
SS18-218ENST00000581021 LCE1AQ5T7P2 110 aa7.86□□□□□ -1.15
SS18-218ENST00000581021 A0A1B0GU69 56 aa7.85□□□□□ -1.15
SS18-218ENST00000581021 ATP5EP56381 51 aaPredicted RBP7.83□□□□□ -1.16
SS18-218ENST00000581021 KRTAP12-1P59990 96 aa7.83□□□□□ -1.16
SS18-218ENST00000581021 SPINT4Q6UDR6 99 aa7.78□□□□□ -1.16
SS18-218ENST00000581021 A8MU10 97 aa7.74□□□□□ -1.17
SS18-218ENST00000581021 KRTAP2-3P0C7H8 128 aa7.72□□□□□ -1.17
SS18-218ENST00000581021 TMEM258P61165 79 aa7.72□□□□□ -1.17
SS18-218ENST00000581021 KRTAP2-4Q9BYR9 128 aa7.72□□□□□ -1.17
SS18-218ENST00000581021 SMIM26A0A096LP01 95 aa7.67□□□□□ -1.18
SS18-218ENST00000581021 LINC01558Q9Y6Z2 57 aa7.66□□□□□ -1.18
SS18-218ENST00000581021 SPRR2DP22532 72 aa7.62□□□□□ -1.19
SS18-218ENST00000581021 KRTAP19-7Q3SYF9 63 aa7.6□□□□□ -1.19
SS18-218ENST00000581021 PRR15LQ9BU68 103 aa7.6□□□□□ -1.19
SS18-218ENST00000581021 MT1EP04732 61 aa7.51□□□□□ -1.21
SS18-218ENST00000581021 C10orf95Q9H7T3 257 aa7.49□□□□□ -1.21
SS18-218ENST00000581021 KRTAP2-2Q9BYT5 123 aa7.47□□□□□ -1.21
SS18-218ENST00000581021 KRTAP2-1Q9BYU5 128 aa7.47□□□□□ -1.21
SS18-218ENST00000581021 KRTAP19-5Q3LI72 72 aa7.42□□□□□ -1.22
SS18-218ENST00000581021 LCE3BQ5TA77 95 aa7.4□□□□□ -1.22
SS18-218ENST00000581021 UQCR11O14957 56 aa7.39□□□□□ -1.23
SS18-218ENST00000581021 LCE5AQ5TCM9 118 aa7.39□□□□□ -1.23
SS18-218ENST00000581021 KRTAP19-3Q7Z4W3 81 aa7.37□□□□□ -1.23
SS18-218ENST00000581021 LCE3AQ5TA76 89 aa7.33□□□□□ -1.24
SS18-218ENST00000581021 TNP1P09430 55 aa7.32□□□□□ -1.24
SS18-218ENST00000581021 PSPHP1O15172 72 aa7.26□□□□□ -1.25
SS18-218ENST00000581021 MIR22HGQ0VDD5 57 aa7.26□□□□□ -1.25
SS18-218ENST00000581021 Q1T7F1 81 aa7.24□□□□□ -1.25
SS18-218ENST00000581021 MT1LQ93083 61 aa7.2□□□□□ -1.26
SS18-218ENST00000581021 V9GYY9 64 aa7.2□□□□□ -1.26
SS18-218ENST00000581021 MT1GP13640 62 aa7.18□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 87.1 ms