RNA–Protein interactions for RNA: ENST00000578700.5

SS18-210, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-210ENST00000578700 ATP11AUNQ6ZP68 121 aa5.46□□□□□ -1.54
SS18-210ENST00000578700 Q75L30 129 aa5.46□□□□□ -1.54
SS18-210ENST00000578700 CYP4F30PQ9H0H9 118 aa5.46□□□□□ -1.54
SS18-210ENST00000578700 IGKV2D-30A0A075B6S6 120 aa5.45□□□□□ -1.54
SS18-210ENST00000578700 C7orf65Q6ZTY9 151 aa5.44□□□□□ -1.54
SS18-210ENST00000578700 SERP1Q9Y6X1 66 aa5.44□□□□□ -1.54
SS18-210ENST00000578700 RPS28P62857 69 aaKnown RBP5.43□□□□□ -1.54
SS18-210ENST00000578700 MT1HP80294 61 aa5.42□□□□□ -1.54
SS18-210ENST00000578700 RPL37P61927 97 aaKnown RBP5.4□□□□□ -1.54
SS18-210ENST00000578700 M0R2T5 61 aa5.38□□□□□ -1.55
SS18-210ENST00000578700 HRES1P13985 223 aa5.38□□□□□ -1.55
SS18-210ENST00000578700 KRTAP19-2Q3LHN2 52 aa5.38□□□□□ -1.55
SS18-210ENST00000578700 KRTAP10-6P60371 365 aaPredicted RBP5.37□□□□□ -1.55
SS18-210ENST00000578700 FLGP20930 4061 aaPredicted RBP5.37□□□□□ -1.55
SS18-210ENST00000578700 SPINK7P58062 85 aa5.35□□□□□ -1.55
SS18-210ENST00000578700 ACYP2P14621 99 aa5.34□□□□□ -1.55
SS18-210ENST00000578700 SMIM26A0A096LP01 95 aa5.31□□□□□ -1.56
SS18-210ENST00000578700 A8MUN3 132 aa5.31□□□□□ -1.56
SS18-210ENST00000578700 COX6B2Q6YFQ2 88 aa5.31□□□□□ -1.56
SS18-210ENST00000578700 DMAC1Q96GE9 116 aa5.31□□□□□ -1.56
SS18-210ENST00000578700 KRTAP9-7A8MTY7 169 aa5.3□□□□□ -1.56
SS18-210ENST00000578700 CHKB-CPT1BH3BT56 60 aa5.3□□□□□ -1.56
SS18-210ENST00000578700 LCE1DQ5T752 114 aa5.29□□□□□ -1.56
SS18-210ENST00000578700 COA5Q86WW8 74 aa5.29□□□□□ -1.56
SS18-210ENST00000578700 C4orf26Q17RF5 130 aa5.28□□□□□ -1.56
SS18-210ENST00000578700 KRTAP4-7Q9BYR0 210 aa5.26□□□□□ -1.57
SS18-210ENST00000578700 USH2AO75445 5202 aa5.25□□□□□ -1.57
SS18-210ENST00000578700 SSPOA2VEC9 5147 aa5.24□□□□□ -1.57
SS18-210ENST00000578700 V9GYY9 64 aa5.24□□□□□ -1.57
SS18-210ENST00000578700 SPTSSBQ8NFR3 76 aa5.22□□□□□ -1.57
SS18-210ENST00000578700 MPLKIPQ8TAP9 179 aa5.2□□□□□ -1.58
SS18-210ENST00000578700 RBM12B-AS1Q9P1G2 102 aa5.19□□□□□ -1.58
SS18-210ENST00000578700 Q1T7F1 81 aa5.17□□□□□ -1.58
SS18-210ENST00000578700 FCGBPQ9Y6R7 5405 aaPredicted RBP5.16□□□□□ -1.58
SS18-210ENST00000578700 KRTAP4-9Q9BYQ8 210 aa5.14□□□□□ -1.59
SS18-210ENST00000578700 LCE4AQ5TA78 99 aa5.13□□□□□ -1.59
SS18-210ENST00000578700 KRTAP3-1Q9BYR8 98 aa5.12□□□□□ -1.59
SS18-210ENST00000578700 H1FX-AS1Q4G0G2 97 aa5.11□□□□□ -1.59
SS18-210ENST00000578700 PRR15LQ9BU68 103 aa5.11□□□□□ -1.59
SS18-210ENST00000578700 LINC01558Q9Y6Z2 57 aa5.1□□□□□ -1.59
SS18-210ENST00000578700 SEC61GP60059 68 aa5.09□□□□□ -1.59
SS18-210ENST00000578700 S4R3F8 94 aa5.08□□□□□ -1.6
SS18-210ENST00000578700 PSPHP1O15172 72 aa5.07□□□□□ -1.6
SS18-210ENST00000578700 KRTAP9-8Q9BYQ0 159 aa5.07□□□□□ -1.6
SS18-210ENST00000578700 A0A1B0GU69 56 aa5.06□□□□□ -1.6
SS18-210ENST00000578700 MACF1Q9UPN3 7388 aaKnown RBP5.05□□□□□ -1.6
SS18-210ENST00000578700 KRTAP4-2Q9BYR5 136 aa5.03□□□□□ -1.6
SS18-210ENST00000578700 LCA10Q71F78 164 aa5.02□□□□□ -1.61
SS18-210ENST00000578700 SYNE2Q8WXH0 6885 aaKnown RBP5.02□□□□□ -1.61
SS18-210ENST00000578700 KRTAP19-4Q3LI73 84 aa5.01□□□□□ -1.61
SS18-210ENST00000578700 Q5VV11 94 aa4.99□□□□□ -1.61
SS18-210ENST00000578700 CSAG1Q6PB30 78 aa4.99□□□□□ -1.61
SS18-210ENST00000578700 A6NED7 52 aa4.97□□□□□ -1.61
SS18-210ENST00000578700 H3BS24 57 aa4.97□□□□□ -1.61
SS18-210ENST00000578700 MT2AP02795 61 aa4.97□□□□□ -1.61
SS18-210ENST00000578700 KRTAP10-10P60014 251 aa4.96□□□□□ -1.62
SS18-210ENST00000578700 KRTAP4-11Q9BYQ6 195 aa4.95□□□□□ -1.62
SS18-210ENST00000578700 MT1FP04733 61 aa4.94□□□□□ -1.62
SS18-210ENST00000578700 BRK1Q8WUW1 75 aa4.93□□□□□ -1.62
SS18-210ENST00000578700 UQCR11O14957 56 aa4.92□□□□□ -1.62
SS18-210ENST00000578700 KRTAP9-3Q9BYQ3 159 aa4.92□□□□□ -1.62
SS18-210ENST00000578700 A0A1B0GU33 70 aa4.88□□□□□ -1.63
SS18-210ENST00000578700 LCE5AQ5TCM9 118 aa4.86□□□□□ -1.63
SS18-210ENST00000578700 MIR22HGQ0VDD5 57 aa4.85□□□□□ -1.63
SS18-210ENST00000578700 CDC42SE1Q9NRR8 79 aa4.85□□□□□ -1.63
SS18-210ENST00000578700 H0YAA0 97 aa4.84□□□□□ -1.63
SS18-210ENST00000578700 ADM2Q7Z4H4 148 aa4.84□□□□□ -1.63
SS18-210ENST00000578700 PRO0628Q9UI54 55 aa4.84□□□□□ -1.63
SS18-210ENST00000578700 KRTAP19-6Q3LI70 58 aa4.83□□□□□ -1.64
SS18-210ENST00000578700 SPATA8Q6RVD6 105 aa4.81□□□□□ -1.64
SS18-210ENST00000578700 KRTAP6-3Q3LI67 103 aa4.8□□□□□ -1.64
SS18-210ENST00000578700 P0C880 135 aa4.76□□□□□ -1.65
SS18-210ENST00000578700 MUC12Q9UKN1 5478 aa4.74□□□□□ -1.65
SS18-210ENST00000578700 M0QZ58 72 aa4.74□□□□□ -1.65
SS18-210ENST00000578700 K7ERS5 55 aa4.73□□□□□ -1.65
SS18-210ENST00000578700 NEBP20929 6669 aa4.72□□□□□ -1.65
SS18-210ENST00000578700 R4GN34 69 aa4.71□□□□□ -1.66
SS18-210ENST00000578700 A8MU10 97 aa4.69□□□□□ -1.66
SS18-210ENST00000578700 PMAIP1Q13794 54 aa4.68□□□□□ -1.66
SS18-210ENST00000578700 CRIPTQ9P021 101 aa4.68□□□□□ -1.66
SS18-210ENST00000578700 A0A0D9SG42 100 aa4.67□□□□□ -1.66
SS18-210ENST00000578700 KRTAP13-4Q3LI77 160 aa4.64□□□□□ -1.67
SS18-210ENST00000578700 KRTAP20-1Q3LI63 56 aa4.62□□□□□ -1.67
SS18-210ENST00000578700 LINC01554Q52M75 96 aa4.61□□□□□ -1.67
SS18-210ENST00000578700 MDN1Q9NU22 5596 aa4.59□□□□□ -1.67
SS18-210ENST00000578700 SPINT4Q6UDR6 99 aa4.58□□□□□ -1.68
SS18-210ENST00000578700 A6NN06 94 aa4.56□□□□□ -1.68
SS18-210ENST00000578700 KMT2DO14686 5537 aa4.53□□□□□ -1.68
SS18-210ENST00000578700 KRTAP12-1P59990 96 aa4.51□□□□□ -1.69
SS18-210ENST00000578700 KRTAP12-2P59991 146 aa4.5□□□□□ -1.69
SS18-210ENST00000578700 KRTAP5-3Q6L8H2 238 aa4.49□□□□□ -1.69
SS18-210ENST00000578700 KTN1-AS1Q86SY8 53 aa4.47□□□□□ -1.69
SS18-210ENST00000578700 SVIPQ8NHG7 77 aa4.47□□□□□ -1.69
SS18-210ENST00000578700 KRTAP5-9P26371 169 aa4.46□□□□□ -1.7
SS18-210ENST00000578700 SPRR2GQ9BYE4 73 aa4.46□□□□□ -1.7
SS18-210ENST00000578700 ROMO1P60602 79 aa4.45□□□□□ -1.7
SS18-210ENST00000578700 CAMK2N1Q7Z7J9 78 aa4.45□□□□□ -1.7
SS18-210ENST00000578700 MT1BP07438 61 aa4.44□□□□□ -1.7
SS18-210ENST00000578700 PLAC4Q8WY50 150 aa4.44□□□□□ -1.7
SS18-210ENST00000578700 KRTAP2-3P0C7H8 128 aa4.41□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms