RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 TGP01266 2768 aa2.1□□□□□ -2.07
NUP88-213ENST00000576862 DNAH1Q9P2D7 4330 aa2.1□□□□□ -2.07
NUP88-213ENST00000576862 PLECQ15149 4684 aaKnown RBP2.09□□□□□ -2.07
NUP88-213ENST00000576862 A0A096LNI7 61 aa2.09□□□□□ -2.07
NUP88-213ENST00000576862 H0YGX0 51 aa2.09□□□□□ -2.07
NUP88-213ENST00000576862 INE1O15225 51 aa2.09□□□□□ -2.07
NUP88-213ENST00000576862 LINC00575Q6W349 94 aa2.09□□□□□ -2.07
NUP88-213ENST00000576862 SNURFQ9Y675 71 aa2.09□□□□□ -2.07
NUP88-213ENST00000576862 VPS13DQ5THJ4 4388 aa2.09□□□□□ -2.08
NUP88-213ENST00000576862 LOC110117498A0A087WWA1 95 aa2.08□□□□□ -2.08
NUP88-213ENST00000576862 COX7BP24311 80 aa2.08□□□□□ -2.08
NUP88-213ENST00000576862 SPATA8Q6RVD6 105 aa2.08□□□□□ -2.08
NUP88-213ENST00000576862 STARD9Q9P2P6 4700 aa2.07□□□□□ -2.08
NUP88-213ENST00000576862 A0A087WTM6 91 aa2.07□□□□□ -2.08
NUP88-213ENST00000576862 A0A087WVE0 104 aa2.07□□□□□ -2.08
NUP88-213ENST00000576862 OBSCN-AS1Q96MR7 158 aa2.07□□□□□ -2.08
NUP88-213ENST00000576862 KCNQ1DNQ9H478 68 aa2.07□□□□□ -2.08
NUP88-213ENST00000576862 CSMD3Q7Z407 3707 aa2.06□□□□□ -2.08
NUP88-213ENST00000576862 LCE6AA0A183 80 aa2.06□□□□□ -2.08
NUP88-213ENST00000576862 LY6G6CO95867 125 aa2.06□□□□□ -2.08
NUP88-213ENST00000576862 SPRR1AP35321 89 aa2.06□□□□□ -2.08
NUP88-213ENST00000576862 RPL37AP61513 92 aaKnown RBP2.06□□□□□ -2.08
NUP88-213ENST00000576862 H0Y9P7 68 aa2.05□□□□□ -2.08
NUP88-213ENST00000576862 Q6ZQY7 126 aa2.05□□□□□ -2.08
NUP88-213ENST00000576862 Q6ZRX8 168 aa2.05□□□□□ -2.08
NUP88-213ENST00000576862 DNAH7Q8WXX0 4024 aa2.05□□□□□ -2.08
NUP88-213ENST00000576862 PRLHP81277 87 aa2.04□□□□□ -2.08
NUP88-213ENST00000576862 ALMS1Q8TCU4 4167 aa2.04□□□□□ -2.08
NUP88-213ENST00000576862 LINC00208Q96KT6 92 aa2.04□□□□□ -2.08
NUP88-213ENST00000576862 DNAH10Q8IVF4 4471 aa2.04□□□□□ -2.08
NUP88-213ENST00000576862 DNAH2Q9P225 4427 aa2.03□□□□□ -2.08
NUP88-213ENST00000576862 ETDCA0A1B0GVM5 59 aa2.03□□□□□ -2.08
NUP88-213ENST00000576862 DNAH17Q9UFH2 4485 aa2.02□□□□□ -2.09
NUP88-213ENST00000576862 IGLV5-48A0A075B6I7 105 aa2.02□□□□□ -2.09
NUP88-213ENST00000576862 NREPQ16612 68 aa2.02□□□□□ -2.09
NUP88-213ENST00000576862 DEFB105AQ8NG35 78 aa2.02□□□□□ -2.09
NUP88-213ENST00000576862 Q96NJ1 140 aa2.02□□□□□ -2.09
NUP88-213ENST00000576862 LINC00472Q9H8W2 130 aa2.02□□□□□ -2.09
NUP88-213ENST00000576862 DNAH11Q96DT5 4516 aa2.01□□□□□ -2.09
NUP88-213ENST00000576862 SPINK7P58062 85 aa2.01□□□□□ -2.09
NUP88-213ENST00000576862 LYSTQ99698 3801 aa2.01□□□□□ -2.09
NUP88-213ENST00000576862 Q6ZSA8 131 aa2□□□□□ -2.09
NUP88-213ENST00000576862 SPRR1BP22528 89 aa1.99□□□□□ -2.09
NUP88-213ENST00000576862 HAMPP81172 84 aa1.99□□□□□ -2.09
NUP88-213ENST00000576862 COA5Q86WW8 74 aa1.99□□□□□ -2.09
NUP88-213ENST00000576862 UBL5Q9BZL1 73 aa1.99□□□□□ -2.09
NUP88-213ENST00000576862 DNAH6Q9C0G6 4158 aa1.99□□□□□ -2.09
NUP88-213ENST00000576862 RYR2Q92736 4967 aa1.99□□□□□ -2.09
NUP88-213ENST00000576862 FAT2Q9NYQ8 4349 aa1.98□□□□□ -2.09
NUP88-213ENST00000576862 SRRM2Q9UQ35 2752 aaKnown RBP1.98□□□□□ -2.09
NUP88-213ENST00000576862 SACSQ9NZJ4 4579 aa1.98□□□□□ -2.09
NUP88-213ENST00000576862 KMT2AQ03164 3969 aa1.98□□□□□ -2.09
NUP88-213ENST00000576862 LRP1BQ9NZR2 4599 aa1.97□□□□□ -2.09
NUP88-213ENST00000576862 DYNC1H1Q14204 4646 aaKnown RBP1.97□□□□□ -2.09
NUP88-213ENST00000576862 DNAH5Q8TE73 4624 aa1.96□□□□□ -2.1
NUP88-213ENST00000576862 ACYP2P14621 99 aa1.96□□□□□ -2.1
NUP88-213ENST00000576862 HYDINQ4G0P3 5121 aa1.96□□□□□ -2.1
NUP88-213ENST00000576862 DNAH8Q96JB1 4490 aa1.95□□□□□ -2.1
NUP88-213ENST00000576862 KMT2CQ8NEZ4 4911 aaKnown RBP1.95□□□□□ -2.1
NUP88-213ENST00000576862 HECTD4Q9Y4D8 3996 aa1.94□□□□□ -2.1
NUP88-213ENST00000576862 PKD1P98161 4303 aa1.94□□□□□ -2.1
NUP88-213ENST00000576862 HMCN1Q96RW7 5635 aa1.93□□□□□ -2.1
NUP88-213ENST00000576862 KRTAP10-4P60372 401 aaPredicted RBP1.93□□□□□ -2.1
NUP88-213ENST00000576862 SMR3BP02814 79 aaPredicted RBP1.92□□□□□ -2.1
NUP88-213ENST00000576862 PLAC4Q8WY50 150 aa1.92□□□□□ -2.1
NUP88-213ENST00000576862 CRCT1Q9UGL9 99 aa1.92□□□□□ -2.1
NUP88-213ENST00000576862 RYR3Q15413 4870 aa1.92□□□□□ -2.1
NUP88-213ENST00000576862 FAT1Q14517 4588 aa1.91□□□□□ -2.1
NUP88-213ENST00000576862 A0A1B0GU69 56 aa1.91□□□□□ -2.1
NUP88-213ENST00000576862 K7EQZ3 153 aa1.91□□□□□ -2.1
NUP88-213ENST00000576862 APOBP04114 4563 aaKnown RBP1.91□□□□□ -2.1
NUP88-213ENST00000576862 FRAS1Q86XX4 4008 aa1.9□□□□□ -2.1
NUP88-213ENST00000576862 KRTAP13-4Q3LI77 160 aa1.9□□□□□ -2.11
NUP88-213ENST00000576862 PKHD1P08F94 4074 aa1.9□□□□□ -2.11
NUP88-213ENST00000576862 SPINK6Q6UWN8 80 aa1.89□□□□□ -2.11
NUP88-213ENST00000576862 SSBP3-AS1Q7Z2R9 100 aa1.89□□□□□ -2.11
NUP88-213ENST00000576862 KIAA1109Q2LD37 5005 aa1.89□□□□□ -2.11
NUP88-213ENST00000576862 WFDC13Q8IUB5 93 aa1.88□□□□□ -2.11
NUP88-213ENST00000576862 RYR1P21817 5038 aa1.88□□□□□ -2.11
NUP88-213ENST00000576862 MMP24-AS1A0A0U1RRL7 71 aa1.87□□□□□ -2.11
NUP88-213ENST00000576862 KRTAP12-1P59990 96 aa1.87□□□□□ -2.11
NUP88-213ENST00000576862 Q5VSD8 79 aa1.86□□□□□ -2.11
NUP88-213ENST00000576862 EPPK1P58107 5090 aaKnown RBP1.85□□□□□ -2.11
NUP88-213ENST00000576862 SPINK1P00995 79 aa1.85□□□□□ -2.11
NUP88-213ENST00000576862 HSPG2P98160 4391 aa1.84□□□□□ -2.11
NUP88-213ENST00000576862 FLG2Q5D862 2391 aaPredicted RBP1.84□□□□□ -2.11
NUP88-213ENST00000576862 VPS13BQ7Z7G8 4022 aa1.84□□□□□ -2.11
NUP88-213ENST00000576862 RPS29P62273 56 aaKnown RBP1.83□□□□□ -2.12
NUP88-213ENST00000576862 MRPL34Q9BQ48 92 aaKnown RBP1.83□□□□□ -2.12
NUP88-213ENST00000576862 MT1HL1P0DM35 61 aa1.82□□□□□ -2.12
NUP88-213ENST00000576862 LRP1Q07954 4544 aaKnown RBP1.81□□□□□ -2.12
NUP88-213ENST00000576862 PKHD1L1Q86WI1 4243 aa1.81□□□□□ -2.12
NUP88-213ENST00000576862 KRTAP4-1Q9BYQ7 146 aa1.81□□□□□ -2.12
NUP88-213ENST00000576862 TP53AIP1Q9HCN2 124 aa1.81□□□□□ -2.12
NUP88-213ENST00000576862 BIRC6Q9NR09 4857 aa1.8□□□□□ -2.12
NUP88-213ENST00000576862 RPL37P61927 97 aaKnown RBP1.8□□□□□ -2.12
NUP88-213ENST00000576862 HERC2O95714 4834 aa1.8□□□□□ -2.12
NUP88-213ENST00000576862 MYCBP2O75592 4640 aa1.79□□□□□ -2.12
NUP88-213ENST00000576862 DMBT1Q9UGM3 2413 aaPredicted RBP1.79□□□□□ -2.12
NUP88-213ENST00000576862 FAT3Q8TDW7 4589 aa1.79□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms