RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-225ENST00000569063 KLKP1Q107X0 134 aa9.12□□□□□ -0.95
CLK3-225ENST00000569063 KRTAP19-8Q3LI54 63 aa9.1□□□□□ -0.95
CLK3-225ENST00000569063 MT1BP07438 61 aa9.09□□□□□ -0.95
CLK3-225ENST00000569063 Q5VV11 94 aa9.09□□□□□ -0.95
CLK3-225ENST00000569063 OCR1Q9BZK8 76 aa9.05□□□□□ -0.96
CLK3-225ENST00000569063 LINC00208Q96KT6 92 aa9.04□□□□□ -0.96
CLK3-225ENST00000569063 A8MUN3 132 aa9.03□□□□□ -0.96
CLK3-225ENST00000569063 NDUFC1O43677 76 aa9.03□□□□□ -0.96
CLK3-225ENST00000569063 IMUPQ9GZP8 106 aa9.03□□□□□ -0.96
CLK3-225ENST00000569063 SYNE2Q8WXH0 6885 aaKnown RBP9.03□□□□□ -0.96
CLK3-225ENST00000569063 CRIPTQ9P021 101 aa9.02□□□□□ -0.97
CLK3-225ENST00000569063 MP68P56378 58 aa9□□□□□ -0.97
CLK3-225ENST00000569063 H0YAA0 97 aa8.98□□□□□ -0.97
CLK3-225ENST00000569063 A6NN06 94 aa8.97□□□□□ -0.97
CLK3-225ENST00000569063 J3QR89 54 aa8.97□□□□□ -0.97
CLK3-225ENST00000569063 KRTAP6-3Q3LI67 103 aa8.94□□□□□ -0.98
CLK3-225ENST00000569063 H3BPC8 53 aa8.9□□□□□ -0.98
CLK3-225ENST00000569063 KRTAP10-5P60370 271 aa8.89□□□□□ -0.99
CLK3-225ENST00000569063 ADM2Q7Z4H4 148 aa8.84□□□□□ -0.99
CLK3-225ENST00000569063 SCGB1A1P11684 91 aa8.83□□□□□ -1
CLK3-225ENST00000569063 DMAC1Q96GE9 116 aa8.77□□□□□ -1.01
CLK3-225ENST00000569063 MT-ATP8P03928 68 aa8.65□□□□□ -1.02
CLK3-225ENST00000569063 C20orf197Q8N268 126 aa8.65□□□□□ -1.02
CLK3-225ENST00000569063 P0C880 135 aa8.64□□□□□ -1.03
CLK3-225ENST00000569063 K7ERU9 68 aa8.63□□□□□ -1.03
CLK3-225ENST00000569063 SMIM20Q8N5G0 67 aa8.62□□□□□ -1.03
CLK3-225ENST00000569063 R4GN34 69 aa8.62□□□□□ -1.03
CLK3-225ENST00000569063 TRAV7A0A075B6U4 112 aa8.61□□□□□ -1.03
CLK3-225ENST00000569063 KRTAP3-2Q9BYR7 98 aa8.59□□□□□ -1.03
CLK3-225ENST00000569063 PLAC4Q8WY50 150 aa8.57□□□□□ -1.04
CLK3-225ENST00000569063 ACYP2P14621 99 aa8.56□□□□□ -1.04
CLK3-225ENST00000569063 PRO2289Q9P1D8 64 aa8.56□□□□□ -1.04
CLK3-225ENST00000569063 KRTAP5-9P26371 169 aa8.55□□□□□ -1.04
CLK3-225ENST00000569063 M0QZ58 72 aa8.54□□□□□ -1.04
CLK3-225ENST00000569063 MT1XP80297 61 aa8.53□□□□□ -1.04
CLK3-225ENST00000569063 MUC12Q9UKN1 5478 aa8.48□□□□□ -1.05
CLK3-225ENST00000569063 NEBP20929 6669 aa8.48□□□□□ -1.05
CLK3-225ENST00000569063 SPTSSBQ8NFR3 76 aa8.46□□□□□ -1.06
CLK3-225ENST00000569063 SNURFQ9Y675 71 aa8.41□□□□□ -1.06
CLK3-225ENST00000569063 LINC01554Q52M75 96 aa8.4□□□□□ -1.06
CLK3-225ENST00000569063 CHKB-CPT1BH3BT56 60 aa8.37□□□□□ -1.07
CLK3-225ENST00000569063 KMT2DO14686 5537 aa8.36□□□□□ -1.07
CLK3-225ENST00000569063 KRTAP12-2P59991 146 aa8.34□□□□□ -1.07
CLK3-225ENST00000569063 SPANXA2-OT1Q8N9U9 137 aa8.33□□□□□ -1.08
CLK3-225ENST00000569063 SERP2Q8N6R1 65 aa8.31□□□□□ -1.08
CLK3-225ENST00000569063 SPRR2FQ96RM1 72 aa8.26□□□□□ -1.09
CLK3-225ENST00000569063 MDN1Q9NU22 5596 aa8.26□□□□□ -1.09
CLK3-225ENST00000569063 KRTAP20-1Q3LI63 56 aa8.25□□□□□ -1.09
CLK3-225ENST00000569063 KRTAP8-1Q8IUC2 63 aa8.25□□□□□ -1.09
CLK3-225ENST00000569063 KRTAP4-8A0A0G2JLE6 195 aa8.15□□□□□ -1.1
CLK3-225ENST00000569063 KRTAP4-8Q9BYQ9 185 aa8.15□□□□□ -1.1
CLK3-225ENST00000569063 SPRR2EP22531 72 aa8.14□□□□□ -1.11
CLK3-225ENST00000569063 SPRR2BP35325 72 aa8.14□□□□□ -1.11
CLK3-225ENST00000569063 SPRR2AP35326 72 aa8.14□□□□□ -1.11
CLK3-225ENST00000569063 KRTAP10-7P60409 375 aaPredicted RBP8.13□□□□□ -1.11
CLK3-225ENST00000569063 KRTAP10-12P60413 245 aa8.12□□□□□ -1.11
CLK3-225ENST00000569063 KRTAP13-4Q3LI77 160 aa8.08□□□□□ -1.12
CLK3-225ENST00000569063 COA5Q86WW8 74 aa8.08□□□□□ -1.12
CLK3-225ENST00000569063 KRTAP2-3P0C7H8 128 aa8.06□□□□□ -1.12
CLK3-225ENST00000569063 LCE1AQ5T7P2 110 aa8.06□□□□□ -1.12
CLK3-225ENST00000569063 KRTAP2-4Q9BYR9 128 aa8.06□□□□□ -1.12
CLK3-225ENST00000569063 COX7CP15954 63 aa8.05□□□□□ -1.12
CLK3-225ENST00000569063 SEC61GP60059 68 aa7.95□□□□□ -1.14
CLK3-225ENST00000569063 H7BZZ5 65 aa7.94□□□□□ -1.14
CLK3-225ENST00000569063 SERP1Q9Y6X1 66 aa7.93□□□□□ -1.14
CLK3-225ENST00000569063 CAMK2N1Q7Z7J9 78 aa7.92□□□□□ -1.14
CLK3-225ENST00000569063 CYSTM1Q9H1C7 97 aa7.92□□□□□ -1.14
CLK3-225ENST00000569063 SPRR2DP22532 72 aa7.87□□□□□ -1.15
CLK3-225ENST00000569063 A0A1B0GU33 70 aa7.82□□□□□ -1.16
CLK3-225ENST00000569063 A0A0D9SG42 100 aa7.81□□□□□ -1.16
CLK3-225ENST00000569063 SPATA8Q6RVD6 105 aa7.81□□□□□ -1.16
CLK3-225ENST00000569063 KRTAP2-2Q9BYT5 123 aa7.81□□□□□ -1.16
CLK3-225ENST00000569063 KRTAP2-1Q9BYU5 128 aa7.81□□□□□ -1.16
CLK3-225ENST00000569063 ANAPC13Q9BS18 74 aa7.74□□□□□ -1.17
CLK3-225ENST00000569063 SPINT4Q6UDR6 99 aa7.71□□□□□ -1.18
CLK3-225ENST00000569063 KRTAP12-1P59990 96 aa7.69□□□□□ -1.18
CLK3-225ENST00000569063 A0A1B0GU69 56 aa7.67□□□□□ -1.18
CLK3-225ENST00000569063 LCE3BQ5TA77 95 aa7.66□□□□□ -1.18
CLK3-225ENST00000569063 KRTAP19-7Q3SYF9 63 aa7.63□□□□□ -1.19
CLK3-225ENST00000569063 SMIM26A0A096LP01 95 aa7.59□□□□□ -1.19
CLK3-225ENST00000569063 CCDC179H3BU77 68 aa7.59□□□□□ -1.19
CLK3-225ENST00000569063 MT1EP04732 61 aa7.56□□□□□ -1.2
CLK3-225ENST00000569063 LCE5AQ5TCM9 118 aa7.53□□□□□ -1.2
CLK3-225ENST00000569063 ATP5EP56381 51 aaPredicted RBP7.52□□□□□ -1.21
CLK3-225ENST00000569063 A8MU10 97 aa7.51□□□□□ -1.21
CLK3-225ENST00000569063 KRTAP19-3Q7Z4W3 81 aa7.5□□□□□ -1.21
CLK3-225ENST00000569063 PRR15LQ9BU68 103 aa7.45□□□□□ -1.22
CLK3-225ENST00000569063 KRTAP19-5Q3LI72 72 aa7.43□□□□□ -1.22
CLK3-225ENST00000569063 LINC01558Q9Y6Z2 57 aa7.39□□□□□ -1.23
CLK3-225ENST00000569063 C10orf95Q9H7T3 257 aa7.35□□□□□ -1.23
CLK3-225ENST00000569063 MT1GP13640 62 aa7.33□□□□□ -1.24
CLK3-225ENST00000569063 DSTQ03001 7570 aaKnown RBP7.33□□□□□ -1.24
CLK3-225ENST00000569063 TNP1P09430 55 aa7.32□□□□□ -1.24
CLK3-225ENST00000569063 TMEM258P61165 79 aa7.32□□□□□ -1.24
CLK3-225ENST00000569063 LCE3AQ5TA76 89 aa7.26□□□□□ -1.25
CLK3-225ENST00000569063 PP632Q6XCG6 107 aa7.26□□□□□ -1.25
CLK3-225ENST00000569063 MT1LQ93083 61 aa7.23□□□□□ -1.25
CLK3-225ENST00000569063 UQCR11O14957 56 aa7.21□□□□□ -1.26
CLK3-225ENST00000569063 MT1MQ8N339 61 aa7.19□□□□□ -1.26
CLK3-225ENST00000569063 KRTAP4-9Q9BYQ8 210 aa7.1□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 67 ms