RNA–Protein interactions for RNA: ENST00000568539.1

SF3B3-212, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-212ENST00000568539 IGKV2D-30A0A075B6S6 120 aa4.33□□□□□ -1.72
SF3B3-212ENST00000568539 A0A0U1RQV1 116 aa4.33□□□□□ -1.72
SF3B3-212ENST00000568539 IGKV2-30P06310 120 aa4.33□□□□□ -1.72
SF3B3-212ENST00000568539 HRES1P13985 223 aa4.33□□□□□ -1.72
SF3B3-212ENST00000568539 C7orf65Q6ZTY9 151 aa4.33□□□□□ -1.72
SF3B3-212ENST00000568539 H0Y9P7 68 aa4.32□□□□□ -1.72
SF3B3-212ENST00000568539 ATOX1O00244 68 aa4.31□□□□□ -1.72
SF3B3-212ENST00000568539 KRTAP19-2Q3LHN2 52 aa4.31□□□□□ -1.72
SF3B3-212ENST00000568539 TRAV7A0A075B6U4 112 aa4.3□□□□□ -1.72
SF3B3-212ENST00000568539 LOC101927531A0A1B0GV80 90 aa4.3□□□□□ -1.72
SF3B3-212ENST00000568539 CCDC179H3BU77 68 aa4.3□□□□□ -1.72
SF3B3-212ENST00000568539 SEC61GP60059 68 aa4.3□□□□□ -1.72
SF3B3-212ENST00000568539 MP68P56378 58 aa4.29□□□□□ -1.72
SF3B3-212ENST00000568539 CYP4F30PQ9H0H9 118 aa4.29□□□□□ -1.72
SF3B3-212ENST00000568539 PRO0628Q9UI54 55 aa4.29□□□□□ -1.72
SF3B3-212ENST00000568539 C1orf64Q8NEQ6 169 aa4.28□□□□□ -1.72
SF3B3-212ENST00000568539 LINC00208Q96KT6 92 aa4.28□□□□□ -1.72
SF3B3-212ENST00000568539 H3BPC8 53 aa4.27□□□□□ -1.73
SF3B3-212ENST00000568539 RBM12B-AS1Q9P1G2 102 aa4.27□□□□□ -1.73
SF3B3-212ENST00000568539 SERP2Q8N6R1 65 aa4.26□□□□□ -1.73
SF3B3-212ENST00000568539 V9GYY9 64 aa4.26□□□□□ -1.73
SF3B3-212ENST00000568539 COX6B2Q6YFQ2 88 aa4.25□□□□□ -1.73
SF3B3-212ENST00000568539 TMEM258P61165 79 aa4.24□□□□□ -1.73
SF3B3-212ENST00000568539 C4orf26Q17RF5 130 aa4.24□□□□□ -1.73
SF3B3-212ENST00000568539 FAM236DA0A1B0GTK5 79 aa4.23□□□□□ -1.73
SF3B3-212ENST00000568539 FAM236CP0DP71 79 aa4.23□□□□□ -1.73
SF3B3-212ENST00000568539 KLKP1Q107X0 134 aa4.22□□□□□ -1.73
SF3B3-212ENST00000568539 COX7CP15954 63 aa4.2□□□□□ -1.74
SF3B3-212ENST00000568539 MT1HP80294 61 aa4.2□□□□□ -1.74
SF3B3-212ENST00000568539 C20orf197Q8N268 126 aa4.2□□□□□ -1.74
SF3B3-212ENST00000568539 SNURFQ9Y675 71 aa4.19□□□□□ -1.74
SF3B3-212ENST00000568539 H1FX-AS1Q4G0G2 97 aa4.18□□□□□ -1.74
SF3B3-212ENST00000568539 SSPOA2VEC9 5147 aa4.15□□□□□ -1.75
SF3B3-212ENST00000568539 USH2AO75445 5202 aa4.13□□□□□ -1.75
SF3B3-212ENST00000568539 A8MUN3 132 aa4.13□□□□□ -1.75
SF3B3-212ENST00000568539 SYNE2Q8WXH0 6885 aaKnown RBP4.12□□□□□ -1.75
SF3B3-212ENST00000568539 M0R2T5 61 aa4.12□□□□□ -1.75
SF3B3-212ENST00000568539 DMAC1Q96GE9 116 aa4.11□□□□□ -1.75
SF3B3-212ENST00000568539 CYSTM1Q9H1C7 97 aa4.11□□□□□ -1.75
SF3B3-212ENST00000568539 SERP1Q9Y6X1 66 aa4.1□□□□□ -1.75
SF3B3-212ENST00000568539 NDUFC1O43677 76 aa4.09□□□□□ -1.75
SF3B3-212ENST00000568539 SPANXA2-OT1Q8N9U9 137 aa4.09□□□□□ -1.75
SF3B3-212ENST00000568539 S4R3F8 94 aa4.09□□□□□ -1.75
SF3B3-212ENST00000568539 FLGP20930 4061 aaPredicted RBP4.09□□□□□ -1.76
SF3B3-212ENST00000568539 SMIM26A0A096LP01 95 aa4.08□□□□□ -1.76
SF3B3-212ENST00000568539 H7BZZ5 65 aa4.08□□□□□ -1.76
SF3B3-212ENST00000568539 KRTAP10-6P60371 365 aaPredicted RBP4.08□□□□□ -1.76
SF3B3-212ENST00000568539 LCA10Q71F78 164 aa4.08□□□□□ -1.76
SF3B3-212ENST00000568539 ATP5EP56381 51 aaPredicted RBP4.06□□□□□ -1.76
SF3B3-212ENST00000568539 ACYP2P14621 99 aa4.04□□□□□ -1.76
SF3B3-212ENST00000568539 PMAIP1Q13794 54 aa4.04□□□□□ -1.76
SF3B3-212ENST00000568539 FCGBPQ9Y6R7 5405 aaPredicted RBP4.03□□□□□ -1.76
SF3B3-212ENST00000568539 MACF1Q9UPN3 7388 aaKnown RBP4.03□□□□□ -1.76
SF3B3-212ENST00000568539 CSAG1Q6PB30 78 aa4.03□□□□□ -1.76
SF3B3-212ENST00000568539 MT2AP02795 61 aa3.99□□□□□ -1.77
SF3B3-212ENST00000568539 CHKB-CPT1BH3BT56 60 aa3.97□□□□□ -1.77
SF3B3-212ENST00000568539 BRK1Q8WUW1 75 aa3.97□□□□□ -1.77
SF3B3-212ENST00000568539 MT1FP04733 61 aa3.96□□□□□ -1.78
SF3B3-212ENST00000568539 COA5Q86WW8 74 aa3.96□□□□□ -1.78
SF3B3-212ENST00000568539 LCE1AQ5T7P2 110 aa3.95□□□□□ -1.78
SF3B3-212ENST00000568539 SPTSSBQ8NFR3 76 aa3.94□□□□□ -1.78
SF3B3-212ENST00000568539 H0YAA0 97 aa3.93□□□□□ -1.78
SF3B3-212ENST00000568539 KRTAP10-10P60014 251 aa3.93□□□□□ -1.78
SF3B3-212ENST00000568539 NEBP20929 6669 aa3.91□□□□□ -1.78
SF3B3-212ENST00000568539 KTN1-AS1Q86SY8 53 aa3.89□□□□□ -1.79
SF3B3-212ENST00000568539 ADM2Q7Z4H4 148 aa3.88□□□□□ -1.79
SF3B3-212ENST00000568539 PRAC1Q96KF2 57 aa3.86□□□□□ -1.79
SF3B3-212ENST00000568539 Q1T7F1 81 aa3.85□□□□□ -1.79
SF3B3-212ENST00000568539 P0C880 135 aa3.84□□□□□ -1.79
SF3B3-212ENST00000568539 CRIPTQ9P021 101 aa3.83□□□□□ -1.8
SF3B3-212ENST00000568539 SPRR2GQ9BYE4 73 aa3.81□□□□□ -1.8
SF3B3-212ENST00000568539 MUC12Q9UKN1 5478 aa3.77□□□□□ -1.81
SF3B3-212ENST00000568539 R4GN34 69 aa3.76□□□□□ -1.81
SF3B3-212ENST00000568539 A0A1B0GU69 56 aa3.75□□□□□ -1.81
SF3B3-212ENST00000568539 M0QZ58 72 aa3.75□□□□□ -1.81
SF3B3-212ENST00000568539 LINC01558Q9Y6Z2 57 aa3.75□□□□□ -1.81
SF3B3-212ENST00000568539 KRTAP19-8Q3LI54 63 aa3.74□□□□□ -1.81
SF3B3-212ENST00000568539 A6NN06 94 aa3.72□□□□□ -1.81
SF3B3-212ENST00000568539 MT1BP07438 61 aa3.71□□□□□ -1.82
SF3B3-212ENST00000568539 A0A1B0GU33 70 aa3.7□□□□□ -1.82
SF3B3-212ENST00000568539 KRTAP13-4Q3LI77 160 aa3.7□□□□□ -1.82
SF3B3-212ENST00000568539 Q5VV11 94 aa3.7□□□□□ -1.82
SF3B3-212ENST00000568539 PRR15LQ9BU68 103 aa3.7□□□□□ -1.82
SF3B3-212ENST00000568539 KRTAP6-3Q3LI67 103 aa3.68□□□□□ -1.82
SF3B3-212ENST00000568539 KRTAP20-1Q3LI63 56 aa3.67□□□□□ -1.82
SF3B3-212ENST00000568539 LINC01554Q52M75 96 aa3.67□□□□□ -1.82
SF3B3-212ENST00000568539 MT3P25713 68 aa3.66□□□□□ -1.82
SF3B3-212ENST00000568539 SPATA8Q6RVD6 105 aa3.66□□□□□ -1.82
SF3B3-212ENST00000568539 CDC42SE1Q9NRR8 79 aa3.65□□□□□ -1.83
SF3B3-212ENST00000568539 PSPHP1O15172 72 aa3.63□□□□□ -1.83
SF3B3-212ENST00000568539 KRTAP19-6Q3LI70 58 aa3.63□□□□□ -1.83
SF3B3-212ENST00000568539 PLAC4Q8WY50 150 aa3.61□□□□□ -1.83
SF3B3-212ENST00000568539 UQCR11O14957 56 aa3.6□□□□□ -1.83
SF3B3-212ENST00000568539 KRTAP2-2Q9BYT5 123 aa3.6□□□□□ -1.83
SF3B3-212ENST00000568539 MDN1Q9NU22 5596 aa3.6□□□□□ -1.83
SF3B3-212ENST00000568539 A0A0D9SG42 100 aa3.59□□□□□ -1.83
SF3B3-212ENST00000568539 NDUFAF8A1L188 74 aa3.58□□□□□ -1.84
SF3B3-212ENST00000568539 A8MU10 97 aa3.58□□□□□ -1.84
SF3B3-212ENST00000568539 A6NED7 52 aa3.56□□□□□ -1.84
SF3B3-212ENST00000568539 KRTAP10-5P60370 271 aa3.56□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms