RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-223ENST00000568488 A0A1B0GW54 56 aa6.77□□□□□ -1.33
CLK3-223ENST00000568488 PRO0461Q9UI25 63 aa6.77□□□□□ -1.33
CLK3-223ENST00000568488 MT1XP80297 61 aa6.76□□□□□ -1.33
CLK3-223ENST00000568488 KRTAP4-8A0A0G2JLE6 195 aa6.74□□□□□ -1.33
CLK3-223ENST00000568488 GTF2H5Q6ZYL4 71 aa6.74□□□□□ -1.33
CLK3-223ENST00000568488 KRTAP4-8Q9BYQ9 185 aa6.74□□□□□ -1.33
CLK3-223ENST00000568488 HCG22E2RYF7 251 aa6.72□□□□□ -1.33
CLK3-223ENST00000568488 H3BT86 120 aa6.71□□□□□ -1.34
CLK3-223ENST00000568488 LOC110117498A0A087WWA1 95 aa6.7□□□□□ -1.34
CLK3-223ENST00000568488 KRTAP12-2P59991 146 aa6.7□□□□□ -1.34
CLK3-223ENST00000568488 DSTQ03001 7570 aaKnown RBP6.69□□□□□ -1.34
CLK3-223ENST00000568488 JMJD7-PLA2G4BH0Y9G9 81 aa6.69□□□□□ -1.34
CLK3-223ENST00000568488 KRTAP3-3Q9BYR6 98 aa6.69□□□□□ -1.34
CLK3-223ENST00000568488 F8W1H4 67 aa6.67□□□□□ -1.34
CLK3-223ENST00000568488 PDE6GP18545 87 aa6.67□□□□□ -1.34
CLK3-223ENST00000568488 PLAC4Q8WY50 150 aa6.65□□□□□ -1.34
CLK3-223ENST00000568488 C14orf132Q9NPU4 83 aa6.65□□□□□ -1.34
CLK3-223ENST00000568488 CXCL6P80162 114 aa6.64□□□□□ -1.35
CLK3-223ENST00000568488 CASC2Q6XLA1 102 aa6.64□□□□□ -1.35
CLK3-223ENST00000568488 KRTAP4-9Q9BYQ8 210 aa6.64□□□□□ -1.35
CLK3-223ENST00000568488 ETDBQ3ZM63 59 aa6.62□□□□□ -1.35
CLK3-223ENST00000568488 A8MUN3 132 aa6.6□□□□□ -1.35
CLK3-223ENST00000568488 BPY2O14599 106 aa6.59□□□□□ -1.35
CLK3-223ENST00000568488 Q8N9L7 120 aa6.57□□□□□ -1.36
CLK3-223ENST00000568488 A0A087WVE0 104 aa6.55□□□□□ -1.36
CLK3-223ENST00000568488 H0YAA0 97 aa6.47□□□□□ -1.37
CLK3-223ENST00000568488 KRTAP10-7P60409 375 aaPredicted RBP6.47□□□□□ -1.37
CLK3-223ENST00000568488 ADM2Q7Z4H4 148 aa6.47□□□□□ -1.37
CLK3-223ENST00000568488 FAM240AA0A1B0GVK7 77 aa6.41□□□□□ -1.38
CLK3-223ENST00000568488 NDUFC1O43677 76 aa6.41□□□□□ -1.38
CLK3-223ENST00000568488 KRTAP10-12P60413 245 aa6.4□□□□□ -1.38
CLK3-223ENST00000568488 HMCN1Q96RW7 5635 aa6.4□□□□□ -1.39
CLK3-223ENST00000568488 ACYP1P07311 99 aa6.38□□□□□ -1.39
CLK3-223ENST00000568488 LCE1DQ5T752 114 aa6.36□□□□□ -1.39
CLK3-223ENST00000568488 UBL5Q9BZL1 73 aa6.36□□□□□ -1.39
CLK3-223ENST00000568488 J3QR89 54 aa6.35□□□□□ -1.39
CLK3-223ENST00000568488 R4GN34 69 aa6.35□□□□□ -1.39
CLK3-223ENST00000568488 CYP4F30PQ9H0H9 118 aa6.33□□□□□ -1.4
CLK3-223ENST00000568488 AHNAK2Q8IVF2 5795 aa6.32□□□□□ -1.4
CLK3-223ENST00000568488 K7ERU9 68 aa6.31□□□□□ -1.4
CLK3-223ENST00000568488 TP53AIP1Q9HCN2 124 aa6.31□□□□□ -1.4
CLK3-223ENST00000568488 LINC00643Q86TS7 51 aa6.28□□□□□ -1.4
CLK3-223ENST00000568488 M0QZ58 72 aa6.27□□□□□ -1.41
CLK3-223ENST00000568488 LINC01554Q52M75 96 aa6.27□□□□□ -1.41
CLK3-223ENST00000568488 MT4P47944 62 aa6.25□□□□□ -1.41
CLK3-223ENST00000568488 ATP5EP2Q5VTU8 51 aa6.24□□□□□ -1.41
CLK3-223ENST00000568488 LCE5AQ5TCM9 118 aa6.22□□□□□ -1.41
CLK3-223ENST00000568488 KRTAP5-10Q6L8G5 202 aa6.22□□□□□ -1.41
CLK3-223ENST00000568488 P0C880 135 aa6.21□□□□□ -1.42
CLK3-223ENST00000568488 MT-ATP8P03928 68 aa6.2□□□□□ -1.42
CLK3-223ENST00000568488 LOC101927531A0A1B0GV80 90 aa6.16□□□□□ -1.42
CLK3-223ENST00000568488 HIST1H4AP62805 103 aaKnown RBP6.16□□□□□ -1.42
CLK3-223ENST00000568488 C20orf197Q8N268 126 aa6.16□□□□□ -1.42
CLK3-223ENST00000568488 LCE4AQ5TA78 99 aa6.15□□□□□ -1.42
CLK3-223ENST00000568488 TRAV22A0A0B4J277 110 aa6.14□□□□□ -1.43
CLK3-223ENST00000568488 KRTAP19-3Q7Z4W3 81 aa6.13□□□□□ -1.43
CLK3-223ENST00000568488 CYSTM1Q9H1C7 97 aa6.07□□□□□ -1.44
CLK3-223ENST00000568488 KRTAP19-7Q3SYF9 63 aa6.05□□□□□ -1.44
CLK3-223ENST00000568488 KRTAP5-7Q6L8G8 165 aa6.05□□□□□ -1.44
CLK3-223ENST00000568488 MT1EP04732 61 aa6.03□□□□□ -1.44
CLK3-223ENST00000568488 OCR1Q9BZK8 76 aa6.01□□□□□ -1.45
CLK3-223ENST00000568488 KRTAP3-2Q9BYR7 98 aa5.99□□□□□ -1.45
CLK3-223ENST00000568488 SPRR5A0A1B0GTR4 108 aa5.97□□□□□ -1.45
CLK3-223ENST00000568488 KRTAP4-6Q9BYQ5 205 aa5.97□□□□□ -1.45
CLK3-223ENST00000568488 SCGB1A1P11684 91 aa5.96□□□□□ -1.46
CLK3-223ENST00000568488 H0Y9P7 68 aa5.95□□□□□ -1.46
CLK3-223ENST00000568488 UQCRQO14949 82 aa5.95□□□□□ -1.46
CLK3-223ENST00000568488 KRTAP5-3Q6L8H2 238 aa5.94□□□□□ -1.46
CLK3-223ENST00000568488 ATOX1O00244 68 aa5.91□□□□□ -1.46
CLK3-223ENST00000568488 MT1GP13640 62 aa5.91□□□□□ -1.46
CLK3-223ENST00000568488 TRAV7A0A075B6U4 112 aa5.9□□□□□ -1.46
CLK3-223ENST00000568488 KRTAP5-4Q6L8H1 288 aa5.88□□□□□ -1.47
CLK3-223ENST00000568488 PP632Q6XCG6 107 aa5.88□□□□□ -1.47
CLK3-223ENST00000568488 SMIM20Q8N5G0 67 aa5.88□□□□□ -1.47
CLK3-223ENST00000568488 SERP2Q8N6R1 65 aa5.85□□□□□ -1.47
CLK3-223ENST00000568488 LINC00208Q96KT6 92 aa5.84□□□□□ -1.47
CLK3-223ENST00000568488 MP68P56378 58 aa5.83□□□□□ -1.48
CLK3-223ENST00000568488 MT1MQ8N339 61 aa5.81□□□□□ -1.48
CLK3-223ENST00000568488 H3BPC8 53 aa5.8□□□□□ -1.48
CLK3-223ENST00000568488 COX7CP15954 63 aa5.78□□□□□ -1.48
CLK3-223ENST00000568488 CAMK2N1Q7Z7J9 78 aa5.77□□□□□ -1.49
CLK3-223ENST00000568488 ANAPC13Q9BS18 74 aa5.77□□□□□ -1.49
CLK3-223ENST00000568488 SNURFQ9Y675 71 aa5.77□□□□□ -1.49
CLK3-223ENST00000568488 KRTAP19-5Q3LI72 72 aa5.76□□□□□ -1.49
CLK3-223ENST00000568488 KRTAP4-3Q9BYR4 195 aa5.74□□□□□ -1.49
CLK3-223ENST00000568488 CCDC179H3BU77 68 aa5.7□□□□□ -1.5
CLK3-223ENST00000568488 A0A0D9SG42 100 aa5.67□□□□□ -1.5
CLK3-223ENST00000568488 MT1LQ93083 61 aa5.66□□□□□ -1.5
CLK3-223ENST00000568488 DMAC1Q96GE9 116 aa5.66□□□□□ -1.5
CLK3-223ENST00000568488 PCP4P48539 62 aa5.65□□□□□ -1.5
CLK3-223ENST00000568488 KRTAP20-2Q3LI61 65 aa5.64□□□□□ -1.51
CLK3-223ENST00000568488 H7BZZ5 65 aa5.63□□□□□ -1.51
CLK3-223ENST00000568488 SPANXA2-OT1Q8N9U9 137 aa5.6□□□□□ -1.51
CLK3-223ENST00000568488 KRTAP13-4Q3LI77 160 aa5.51□□□□□ -1.53
CLK3-223ENST00000568488 ACYP2P14621 99 aa5.5□□□□□ -1.53
CLK3-223ENST00000568488 SPTSSBQ8NFR3 76 aa5.5□□□□□ -1.53
CLK3-223ENST00000568488 KRTAP12-4P60329 112 aa5.44□□□□□ -1.54
CLK3-223ENST00000568488 TMEM258P61165 79 aa5.44□□□□□ -1.54
CLK3-223ENST00000568488 COA5Q86WW8 74 aa5.43□□□□□ -1.54
CLK3-223ENST00000568488 ATP5EP56381 51 aaPredicted RBP5.41□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms