RNA–Protein interactions for RNA: ENST00000563220.1

COMMD4-208, Transcript of COMM domain containing 4, humanhuman

TSL 2

Gene COMMD4, Length 1,897 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-208ENST00000563220 CDC42SE1Q9NRR8 79 aa9.32□□□□□ -0.92
COMMD4-208ENST00000563220 A8MU10 97 aa9.31□□□□□ -0.92
COMMD4-208ENST00000563220 KRTAP3-1Q9BYR8 98 aa9.3□□□□□ -0.92
COMMD4-208ENST00000563220 HMCN2Q8NDA2 5059 aa9.3□□□□□ -0.92
COMMD4-208ENST00000563220 SEC61BP60468 96 aaKnown RBP9.29□□□□□ -0.92
COMMD4-208ENST00000563220 COX6B2Q6YFQ2 88 aa9.25□□□□□ -0.93
COMMD4-208ENST00000563220 MUC17Q685J3 4493 aa9.22□□□□□ -0.93
COMMD4-208ENST00000563220 PMAIP1Q13794 54 aa9.21□□□□□ -0.94
COMMD4-208ENST00000563220 KRTAP4-1Q9BYQ7 146 aa9.2□□□□□ -0.94
COMMD4-208ENST00000563220 A0A1B0GU69 56 aa9.17□□□□□ -0.94
COMMD4-208ENST00000563220 SPTSSBQ8NFR3 76 aa9.16□□□□□ -0.94
COMMD4-208ENST00000563220 A6NN06 94 aa9.11□□□□□ -0.95
COMMD4-208ENST00000563220 RBM12B-AS1Q9P1G2 102 aa9.07□□□□□ -0.96
COMMD4-208ENST00000563220 SPATA8Q6RVD6 105 aa9.05□□□□□ -0.96
COMMD4-208ENST00000563220 KTN1-AS1Q86SY8 53 aa9.04□□□□□ -0.96
COMMD4-208ENST00000563220 UQCR11O14957 56 aa9.02□□□□□ -0.97
COMMD4-208ENST00000563220 H1FX-AS1Q4G0G2 97 aa9.02□□□□□ -0.97
COMMD4-208ENST00000563220 MUC2Q02817 5179 aa9□□□□□ -0.97
COMMD4-208ENST00000563220 KRTAP3-3Q9BYR6 98 aa8.96□□□□□ -0.97
COMMD4-208ENST00000563220 MIR22HGQ0VDD5 57 aa8.96□□□□□ -0.98
COMMD4-208ENST00000563220 S4R3F8 94 aa8.95□□□□□ -0.98
COMMD4-208ENST00000563220 KRTAP19-2Q3LHN2 52 aa8.94□□□□□ -0.98
COMMD4-208ENST00000563220 SEC61GP60059 68 aa8.94□□□□□ -0.98
COMMD4-208ENST00000563220 UBR4Q5T4S7 5183 aa8.88□□□□□ -0.99
COMMD4-208ENST00000563220 RNF213Q63HN8 5207 aa8.83□□□□□ -1
COMMD4-208ENST00000563220 CSAG1Q6PB30 78 aa8.74□□□□□ -1.01
COMMD4-208ENST00000563220 LCE2CQ5TA81 110 aa8.72□□□□□ -1.01
COMMD4-208ENST00000563220 FLGP20930 4061 aaPredicted RBP8.72□□□□□ -1.01
COMMD4-208ENST00000563220 A0A1B0GU33 70 aa8.71□□□□□ -1.01
COMMD4-208ENST00000563220 H0YAA0 97 aa8.7□□□□□ -1.02
COMMD4-208ENST00000563220 KRTAP3-2Q9BYR7 98 aa8.65□□□□□ -1.02
COMMD4-208ENST00000563220 KRTAP10-6P60371 365 aaPredicted RBP8.64□□□□□ -1.03
COMMD4-208ENST00000563220 FAT4Q6V0I7 4981 aa8.61□□□□□ -1.03
COMMD4-208ENST00000563220 ADM2Q7Z4H4 148 aa8.59□□□□□ -1.03
COMMD4-208ENST00000563220 P0C880 135 aa8.57□□□□□ -1.04
COMMD4-208ENST00000563220 PRAC1Q96KF2 57 aa8.56□□□□□ -1.04
COMMD4-208ENST00000563220 MT1HP80294 61 aa8.51□□□□□ -1.05
COMMD4-208ENST00000563220 K7ERS5 55 aa8.43□□□□□ -1.06
COMMD4-208ENST00000563220 KRTAP13-4Q3LI77 160 aa8.42□□□□□ -1.06
COMMD4-208ENST00000563220 M0R2T5 61 aa8.41□□□□□ -1.06
COMMD4-208ENST00000563220 LORP23490 312 aaPredicted RBP8.36□□□□□ -1.07
COMMD4-208ENST00000563220 LINC01554Q52M75 96 aa8.32□□□□□ -1.08
COMMD4-208ENST00000563220 M0QZ58 72 aa8.28□□□□□ -1.08
COMMD4-208ENST00000563220 R4GN34 69 aa8.25□□□□□ -1.09
COMMD4-208ENST00000563220 A0A0D9SG42 100 aa8.24□□□□□ -1.09
COMMD4-208ENST00000563220 KRTAP25-1Q3LHN0 102 aa8.23□□□□□ -1.09
COMMD4-208ENST00000563220 KRTAP9-8Q9BYQ0 159 aa8.23□□□□□ -1.09
COMMD4-208ENST00000563220 ROMO1P60602 79 aa8.21□□□□□ -1.1
COMMD4-208ENST00000563220 MT2AP02795 61 aa8.19□□□□□ -1.1
COMMD4-208ENST00000563220 LCE2AQ5TA79 106 aaPredicted RBP8.16□□□□□ -1.1
COMMD4-208ENST00000563220 MT1FP04733 61 aa8.15□□□□□ -1.1
COMMD4-208ENST00000563220 CRIPTQ9P021 101 aa8.14□□□□□ -1.11
COMMD4-208ENST00000563220 KRTAP10-10P60014 251 aa8.11□□□□□ -1.11
COMMD4-208ENST00000563220 KRTAP12-1P59990 96 aa8.07□□□□□ -1.12
COMMD4-208ENST00000563220 KRTAP12-2P59991 146 aa8.06□□□□□ -1.12
COMMD4-208ENST00000563220 SPINT4Q6UDR6 99 aa8.03□□□□□ -1.12
COMMD4-208ENST00000563220 KRTAP19-1Q8IUB9 90 aa8.03□□□□□ -1.12
COMMD4-208ENST00000563220 SPRR2GQ9BYE4 73 aa8.02□□□□□ -1.13
COMMD4-208ENST00000563220 KRTAP9-3Q9BYQ3 159 aa7.93□□□□□ -1.14
COMMD4-208ENST00000563220 KRTAP19-8Q3LI54 63 aa7.81□□□□□ -1.16
COMMD4-208ENST00000563220 C10orf95Q9H7T3 257 aa7.77□□□□□ -1.17
COMMD4-208ENST00000563220 PLAC4Q8WY50 150 aa7.74□□□□□ -1.17
COMMD4-208ENST00000563220 MT1BP07438 61 aa7.73□□□□□ -1.17
COMMD4-208ENST00000563220 CAMK2N1Q7Z7J9 78 aa7.72□□□□□ -1.17
COMMD4-208ENST00000563220 LCE2BO14633 110 aa7.71□□□□□ -1.18
COMMD4-208ENST00000563220 USH2AO75445 5202 aa7.52□□□□□ -1.21
COMMD4-208ENST00000563220 MT1XP80297 61 aa7.48□□□□□ -1.21
COMMD4-208ENST00000563220 KRTAP10-5P60370 271 aa7.47□□□□□ -1.21
COMMD4-208ENST00000563220 KRTAP15-1Q3LI76 137 aa7.47□□□□□ -1.21
COMMD4-208ENST00000563220 PP632Q6XCG6 107 aa7.39□□□□□ -1.23
COMMD4-208ENST00000563220 LCE2DQ5TA82 110 aaPredicted RBP7.37□□□□□ -1.23
COMMD4-208ENST00000563220 TNP1P09430 55 aa7.35□□□□□ -1.23
COMMD4-208ENST00000563220 PRO2289Q9P1D8 64 aa7.32□□□□□ -1.24
COMMD4-208ENST00000563220 H3BS24 57 aa7.3□□□□□ -1.24
COMMD4-208ENST00000563220 SSPOA2VEC9 5147 aa7.26□□□□□ -1.25
COMMD4-208ENST00000563220 KRTAP23-1A1A580 65 aa7.26□□□□□ -1.25
COMMD4-208ENST00000563220 FSIP2Q5CZC0 6907 aa7.21□□□□□ -1.26
COMMD4-208ENST00000563220 KRTAP10-7P60409 375 aaPredicted RBP7.2□□□□□ -1.26
COMMD4-208ENST00000563220 KRTAP19-6Q3LI70 58 aa7.19□□□□□ -1.26
COMMD4-208ENST00000563220 NDUFAF8A1L188 74 aa7.15□□□□□ -1.27
COMMD4-208ENST00000563220 LCE3AQ5TA76 89 aa7.09□□□□□ -1.28
COMMD4-208ENST00000563220 KRTAP9-2Q9BYQ4 174 aa7.09□□□□□ -1.28
COMMD4-208ENST00000563220 KRTAP10-12P60413 245 aa7.07□□□□□ -1.28
COMMD4-208ENST00000563220 FCGBPQ9Y6R7 5405 aaPredicted RBP6.95□□□□□ -1.3
COMMD4-208ENST00000563220 KRTAP4-8A0A0G2JLE6 195 aa6.94□□□□□ -1.3
COMMD4-208ENST00000563220 KRTAP4-8Q9BYQ9 185 aa6.94□□□□□ -1.3
COMMD4-208ENST00000563220 KMT2DO14686 5537 aa6.93□□□□□ -1.3
COMMD4-208ENST00000563220 KRTAP8-1Q8IUC2 63 aa6.92□□□□□ -1.3
COMMD4-208ENST00000563220 LUZP6Q538Z0 58 aa6.85□□□□□ -1.31
COMMD4-208ENST00000563220 CRCT1Q9UGL9 99 aa6.84□□□□□ -1.31
COMMD4-208ENST00000563220 SPRR5A0A1B0GTR4 108 aa6.83□□□□□ -1.32
COMMD4-208ENST00000563220 KRTAP12-3P60328 96 aa6.78□□□□□ -1.32
COMMD4-208ENST00000563220 KRTAP19-5Q3LI72 72 aa6.77□□□□□ -1.33
COMMD4-208ENST00000563220 KRTAP19-7Q3SYF9 63 aa6.68□□□□□ -1.34
COMMD4-208ENST00000563220 MACF1Q9UPN3 7388 aaKnown RBP6.58□□□□□ -1.36
COMMD4-208ENST00000563220 MT1EP04732 61 aa6.55□□□□□ -1.36
COMMD4-208ENST00000563220 KRTAP9-6A0A140TA67 174 aa6.5□□□□□ -1.37
COMMD4-208ENST00000563220 MT1LQ93083 61 aa6.43□□□□□ -1.38
COMMD4-208ENST00000563220 A0A0A0MQY5 61 aa6.42□□□□□ -1.38
COMMD4-208ENST00000563220 SPRR2FQ96RM1 72 aa6.4□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms