RNA–Protein interactions for RNA: ENST00000556096.6

VPS33B-205, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 2

Gene VPS33B, Length 1,731 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-205ENST00000556096 PRR15LQ9BU68 103 aa7.53□□□□□ -1.2
VPS33B-205ENST00000556096 SPTSSBQ8NFR3 76 aa7.52□□□□□ -1.21
VPS33B-205ENST00000556096 Q5VV11 94 aa7.51□□□□□ -1.21
VPS33B-205ENST00000556096 MUC2Q02817 5179 aa7.46□□□□□ -1.22
VPS33B-205ENST00000556096 RBM12B-AS1Q9P1G2 102 aa7.43□□□□□ -1.22
VPS33B-205ENST00000556096 A0A1B0GU69 56 aa7.42□□□□□ -1.22
VPS33B-205ENST00000556096 H1FX-AS1Q4G0G2 97 aa7.41□□□□□ -1.22
VPS33B-205ENST00000556096 KRTAP4-1Q9BYQ7 146 aa7.39□□□□□ -1.23
VPS33B-205ENST00000556096 SVIPQ8NHG7 77 aa7.37□□□□□ -1.23
VPS33B-205ENST00000556096 S4R3F8 94 aa7.37□□□□□ -1.23
VPS33B-205ENST00000556096 LCA10Q71F78 164 aa7.36□□□□□ -1.23
VPS33B-205ENST00000556096 KRTAP3-3Q9BYR6 98 aa7.36□□□□□ -1.23
VPS33B-205ENST00000556096 BRK1Q8WUW1 75 aa7.35□□□□□ -1.23
VPS33B-205ENST00000556096 SEC61GP60059 68 aa7.34□□□□□ -1.23
VPS33B-205ENST00000556096 A6NED7 52 aa7.33□□□□□ -1.24
VPS33B-205ENST00000556096 PRO0628Q9UI54 55 aa7.3□□□□□ -1.24
VPS33B-205ENST00000556096 CDC42SE1Q9NRR8 79 aa7.25□□□□□ -1.25
VPS33B-205ENST00000556096 UQCR11O14957 56 aa7.24□□□□□ -1.25
VPS33B-205ENST00000556096 FAT4Q6V0I7 4981 aa7.21□□□□□ -1.25
VPS33B-205ENST00000556096 CSAG1Q6PB30 78 aa7.2□□□□□ -1.26
VPS33B-205ENST00000556096 A8MU10 97 aa7.19□□□□□ -1.26
VPS33B-205ENST00000556096 KRTAP19-2Q3LHN2 52 aa7.19□□□□□ -1.26
VPS33B-205ENST00000556096 SPATA8Q6RVD6 105 aa7.18□□□□□ -1.26
VPS33B-205ENST00000556096 A0A1B0GU33 70 aa7.16□□□□□ -1.26
VPS33B-205ENST00000556096 MIR22HGQ0VDD5 57 aa7.16□□□□□ -1.26
VPS33B-205ENST00000556096 KRTAP10-6P60371 365 aaPredicted RBP7.14□□□□□ -1.27
VPS33B-205ENST00000556096 KRTAP3-2Q9BYR7 98 aa7.14□□□□□ -1.27
VPS33B-205ENST00000556096 H0YAA0 97 aa7.08□□□□□ -1.28
VPS33B-205ENST00000556096 LCE2CQ5TA81 110 aa7.08□□□□□ -1.28
VPS33B-205ENST00000556096 ADM2Q7Z4H4 148 aa7.06□□□□□ -1.28
VPS33B-205ENST00000556096 P0C880 135 aa7.04□□□□□ -1.28
VPS33B-205ENST00000556096 LCE2AQ5TA79 106 aaPredicted RBP7.03□□□□□ -1.28
VPS33B-205ENST00000556096 FLGP20930 4061 aaPredicted RBP7.01□□□□□ -1.29
VPS33B-205ENST00000556096 MT1HP80294 61 aa6.97□□□□□ -1.29
VPS33B-205ENST00000556096 PMAIP1Q13794 54 aa6.97□□□□□ -1.29
VPS33B-205ENST00000556096 KRTAP13-4Q3LI77 160 aa6.95□□□□□ -1.3
VPS33B-205ENST00000556096 A6NN06 94 aa6.93□□□□□ -1.3
VPS33B-205ENST00000556096 M0QZ58 72 aa6.9□□□□□ -1.3
VPS33B-205ENST00000556096 M0R2T5 61 aa6.9□□□□□ -1.31
VPS33B-205ENST00000556096 KRTAP9-2Q9BYQ4 174 aa6.87□□□□□ -1.31
VPS33B-205ENST00000556096 A0A0D9SG42 100 aa6.81□□□□□ -1.32
VPS33B-205ENST00000556096 K7ERS5 55 aa6.81□□□□□ -1.32
VPS33B-205ENST00000556096 R4GN34 69 aa6.8□□□□□ -1.32
VPS33B-205ENST00000556096 LORP23490 312 aaPredicted RBP6.78□□□□□ -1.32
VPS33B-205ENST00000556096 KTN1-AS1Q86SY8 53 aa6.73□□□□□ -1.33
VPS33B-205ENST00000556096 CRIPTQ9P021 101 aa6.72□□□□□ -1.33
VPS33B-205ENST00000556096 KRTAP12-1P59990 96 aa6.7□□□□□ -1.34
VPS33B-205ENST00000556096 LCE2DQ5TA82 110 aaPredicted RBP6.7□□□□□ -1.34
VPS33B-205ENST00000556096 KRTAP12-2P59991 146 aa6.68□□□□□ -1.34
VPS33B-205ENST00000556096 KRTAP9-6A0A140TA67 174 aa6.65□□□□□ -1.34
VPS33B-205ENST00000556096 LINC01554Q52M75 96 aa6.65□□□□□ -1.34
VPS33B-205ENST00000556096 SPINT4Q6UDR6 99 aa6.65□□□□□ -1.34
VPS33B-205ENST00000556096 KRTAP9-8Q9BYQ0 159 aa6.64□□□□□ -1.35
VPS33B-205ENST00000556096 MT2AP02795 61 aa6.6□□□□□ -1.35
VPS33B-205ENST00000556096 MT1FP04733 61 aa6.56□□□□□ -1.36
VPS33B-205ENST00000556096 ROMO1P60602 79 aa6.56□□□□□ -1.36
VPS33B-205ENST00000556096 KRTAP10-10P60014 251 aa6.53□□□□□ -1.36
VPS33B-205ENST00000556096 SPRR2GQ9BYE4 73 aa6.53□□□□□ -1.36
VPS33B-205ENST00000556096 CRCT1Q9UGL9 99 aa6.5□□□□□ -1.37
VPS33B-205ENST00000556096 KRTAP19-1Q8IUB9 90 aa6.49□□□□□ -1.37
VPS33B-205ENST00000556096 PRAC1Q96KF2 57 aa6.49□□□□□ -1.37
VPS33B-205ENST00000556096 FSIP2Q5CZC0 6907 aa6.42□□□□□ -1.38
VPS33B-205ENST00000556096 KRTAP9-3Q9BYQ3 159 aa6.41□□□□□ -1.38
VPS33B-205ENST00000556096 CAMK2N1Q7Z7J9 78 aa6.38□□□□□ -1.39
VPS33B-205ENST00000556096 USH2AO75445 5202 aa6.36□□□□□ -1.39
VPS33B-205ENST00000556096 LCE2BO14633 110 aa6.34□□□□□ -1.39
VPS33B-205ENST00000556096 KRTAP25-1Q3LHN0 102 aa6.34□□□□□ -1.39
VPS33B-205ENST00000556096 KRTAP19-8Q3LI54 63 aa6.34□□□□□ -1.39
VPS33B-205ENST00000556096 PLAC4Q8WY50 150 aa6.34□□□□□ -1.39
VPS33B-205ENST00000556096 C10orf95Q9H7T3 257 aa6.33□□□□□ -1.4
VPS33B-205ENST00000556096 SSPOA2VEC9 5147 aa6.24□□□□□ -1.41
VPS33B-205ENST00000556096 MT1BP07438 61 aa6.22□□□□□ -1.41
VPS33B-205ENST00000556096 TNP1P09430 55 aa6.11□□□□□ -1.43
VPS33B-205ENST00000556096 KRTAP10-5P60370 271 aa6.05□□□□□ -1.44
VPS33B-205ENST00000556096 MT1XP80297 61 aa6.05□□□□□ -1.44
VPS33B-205ENST00000556096 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.05□□□□□ -1.44
VPS33B-205ENST00000556096 PP632Q6XCG6 107 aa6.04□□□□□ -1.44
VPS33B-205ENST00000556096 KRTAP23-1A1A580 65 aa6.02□□□□□ -1.45
VPS33B-205ENST00000556096 FCGBPQ9Y6R7 5405 aaPredicted RBP6.02□□□□□ -1.45
VPS33B-205ENST00000556096 KRTAP19-6Q3LI70 58 aa5.99□□□□□ -1.45
VPS33B-205ENST00000556096 KRTAP9-7A8MTY7 169 aa5.99□□□□□ -1.45
VPS33B-205ENST00000556096 PRO2289Q9P1D8 64 aa5.98□□□□□ -1.45
VPS33B-205ENST00000556096 LCE3AQ5TA76 89 aa5.82□□□□□ -1.48
VPS33B-205ENST00000556096 KRTAP10-7P60409 375 aaPredicted RBP5.81□□□□□ -1.48
VPS33B-205ENST00000556096 MACF1Q9UPN3 7388 aaKnown RBP5.8□□□□□ -1.48
VPS33B-205ENST00000556096 KRTAP10-12P60413 245 aa5.79□□□□□ -1.48
VPS33B-205ENST00000556096 SYNE2Q8WXH0 6885 aaKnown RBP5.77□□□□□ -1.49
VPS33B-205ENST00000556096 KRTAP8-1Q8IUC2 63 aa5.74□□□□□ -1.49
VPS33B-205ENST00000556096 KRTAP6-3Q3LI67 103 aa5.68□□□□□ -1.5
VPS33B-205ENST00000556096 KRTAP15-1Q3LI76 137 aa5.65□□□□□ -1.5
VPS33B-205ENST00000556096 KMT2DO14686 5537 aa5.62□□□□□ -1.51
VPS33B-205ENST00000556096 KRTAP12-3P60328 96 aa5.59□□□□□ -1.51
VPS33B-205ENST00000556096 KRTAP4-8A0A0G2JLE6 195 aa5.54□□□□□ -1.52
VPS33B-205ENST00000556096 KRTAP4-8Q9BYQ9 185 aa5.54□□□□□ -1.52
VPS33B-205ENST00000556096 KRTAP19-5Q3LI72 72 aa5.5□□□□□ -1.53
VPS33B-205ENST00000556096 SPRR5A0A1B0GTR4 108 aa5.42□□□□□ -1.54
VPS33B-205ENST00000556096 KRTAP5-9P26371 169 aa5.41□□□□□ -1.54
VPS33B-205ENST00000556096 MUC12Q9UKN1 5478 aa5.41□□□□□ -1.54
VPS33B-205ENST00000556096 KRTAP19-7Q3SYF9 63 aa5.4□□□□□ -1.54
VPS33B-205ENST00000556096 NEBP20929 6669 aa5.39□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 98.1 ms