RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 MACF1Q9UPN3 7388 aaKnown RBP7.2□□□□□ -1.26
CCDC88C-209ENST00000554872 MT1BP07438 61 aa7.2□□□□□ -1.26
CCDC88C-209ENST00000554872 A8MUN3 132 aa7.19□□□□□ -1.26
CCDC88C-209ENST00000554872 Q5VV11 94 aa7.19□□□□□ -1.26
CCDC88C-209ENST00000554872 CRIPTQ9P021 101 aa7.18□□□□□ -1.26
CCDC88C-209ENST00000554872 A0A1B0GV90 55 aa7.17□□□□□ -1.26
CCDC88C-209ENST00000554872 OCR1Q9BZK8 76 aa7.17□□□□□ -1.26
CCDC88C-209ENST00000554872 H0YAA0 97 aa7.16□□□□□ -1.26
CCDC88C-209ENST00000554872 IMUPQ9GZP8 106 aa7.14□□□□□ -1.27
CCDC88C-209ENST00000554872 NDUFC1O43677 76 aa7.13□□□□□ -1.27
CCDC88C-209ENST00000554872 LINC00208Q96KT6 92 aa7.12□□□□□ -1.27
CCDC88C-209ENST00000554872 J3QR89 54 aa7.1□□□□□ -1.27
CCDC88C-209ENST00000554872 MP68P56378 58 aa7.1□□□□□ -1.27
CCDC88C-209ENST00000554872 KRTAP6-3Q3LI67 103 aa7.1□□□□□ -1.27
CCDC88C-209ENST00000554872 A6NN06 94 aa7.09□□□□□ -1.27
CCDC88C-209ENST00000554872 H3BPC8 53 aa7.07□□□□□ -1.28
CCDC88C-209ENST00000554872 KRTAP10-5P60370 271 aa7.06□□□□□ -1.28
CCDC88C-209ENST00000554872 SYNE2Q8WXH0 6885 aaKnown RBP7.03□□□□□ -1.28
CCDC88C-209ENST00000554872 DMAC1Q96GE9 116 aa6.97□□□□□ -1.29
CCDC88C-209ENST00000554872 ADM2Q7Z4H4 148 aa6.96□□□□□ -1.3
CCDC88C-209ENST00000554872 SCGB1A1P11684 91 aa6.93□□□□□ -1.3
CCDC88C-209ENST00000554872 C20orf197Q8N268 126 aa6.88□□□□□ -1.31
CCDC88C-209ENST00000554872 SMIM20Q8N5G0 67 aa6.85□□□□□ -1.31
CCDC88C-209ENST00000554872 TRAV7A0A075B6U4 112 aa6.83□□□□□ -1.32
CCDC88C-209ENST00000554872 K7ERU9 68 aa6.83□□□□□ -1.32
CCDC88C-209ENST00000554872 KRTAP5-9P26371 169 aa6.82□□□□□ -1.32
CCDC88C-209ENST00000554872 MT-ATP8P03928 68 aa6.81□□□□□ -1.32
CCDC88C-209ENST00000554872 P0C880 135 aa6.81□□□□□ -1.32
CCDC88C-209ENST00000554872 R4GN34 69 aa6.8□□□□□ -1.32
CCDC88C-209ENST00000554872 KRTAP3-2Q9BYR7 98 aa6.79□□□□□ -1.32
CCDC88C-209ENST00000554872 PRO2289Q9P1D8 64 aa6.79□□□□□ -1.32
CCDC88C-209ENST00000554872 ACYP2P14621 99 aa6.76□□□□□ -1.33
CCDC88C-209ENST00000554872 MT1XP80297 61 aa6.76□□□□□ -1.33
CCDC88C-209ENST00000554872 PLAC4Q8WY50 150 aa6.75□□□□□ -1.33
CCDC88C-209ENST00000554872 M0QZ58 72 aa6.73□□□□□ -1.33
CCDC88C-209ENST00000554872 SPTSSBQ8NFR3 76 aa6.7□□□□□ -1.34
CCDC88C-209ENST00000554872 MUC12Q9UKN1 5478 aa6.67□□□□□ -1.34
CCDC88C-209ENST00000554872 NEBP20929 6669 aa6.66□□□□□ -1.34
CCDC88C-209ENST00000554872 KRTAP12-2P59991 146 aa6.66□□□□□ -1.34
CCDC88C-209ENST00000554872 KMT2DO14686 5537 aa6.64□□□□□ -1.35
CCDC88C-209ENST00000554872 SPANXA2-OT1Q8N9U9 137 aa6.63□□□□□ -1.35
CCDC88C-209ENST00000554872 SNURFQ9Y675 71 aa6.59□□□□□ -1.35
CCDC88C-209ENST00000554872 CHKB-CPT1BH3BT56 60 aa6.58□□□□□ -1.36
CCDC88C-209ENST00000554872 LINC01554Q52M75 96 aa6.58□□□□□ -1.36
CCDC88C-209ENST00000554872 SERP2Q8N6R1 65 aa6.57□□□□□ -1.36
CCDC88C-209ENST00000554872 MDN1Q9NU22 5596 aa6.53□□□□□ -1.36
CCDC88C-209ENST00000554872 KRTAP20-1Q3LI63 56 aa6.53□□□□□ -1.36
CCDC88C-209ENST00000554872 SPRR2FQ96RM1 72 aa6.52□□□□□ -1.37
CCDC88C-209ENST00000554872 KRTAP8-1Q8IUC2 63 aa6.51□□□□□ -1.37
CCDC88C-209ENST00000554872 KRTAP10-12P60413 245 aa6.45□□□□□ -1.38
CCDC88C-209ENST00000554872 SPRR2EP22531 72 aa6.42□□□□□ -1.38
CCDC88C-209ENST00000554872 SPRR2BP35325 72 aa6.42□□□□□ -1.38
CCDC88C-209ENST00000554872 SPRR2AP35326 72 aa6.42□□□□□ -1.38
CCDC88C-209ENST00000554872 KRTAP10-7P60409 375 aaPredicted RBP6.41□□□□□ -1.38
CCDC88C-209ENST00000554872 KRTAP4-8A0A0G2JLE6 195 aa6.4□□□□□ -1.38
CCDC88C-209ENST00000554872 KRTAP4-8Q9BYQ9 185 aa6.4□□□□□ -1.38
CCDC88C-209ENST00000554872 LCE1AQ5T7P2 110 aa6.39□□□□□ -1.39
CCDC88C-209ENST00000554872 KRTAP2-3P0C7H8 128 aa6.38□□□□□ -1.39
CCDC88C-209ENST00000554872 KRTAP2-4Q9BYR9 128 aa6.38□□□□□ -1.39
CCDC88C-209ENST00000554872 KRTAP13-4Q3LI77 160 aa6.37□□□□□ -1.39
CCDC88C-209ENST00000554872 COA5Q86WW8 74 aa6.37□□□□□ -1.39
CCDC88C-209ENST00000554872 COX7CP15954 63 aa6.36□□□□□ -1.39
CCDC88C-209ENST00000554872 H7BZZ5 65 aa6.28□□□□□ -1.4
CCDC88C-209ENST00000554872 SEC61GP60059 68 aa6.26□□□□□ -1.41
CCDC88C-209ENST00000554872 SERP1Q9Y6X1 66 aa6.24□□□□□ -1.41
CCDC88C-209ENST00000554872 CAMK2N1Q7Z7J9 78 aa6.23□□□□□ -1.41
CCDC88C-209ENST00000554872 CYSTM1Q9H1C7 97 aa6.22□□□□□ -1.41
CCDC88C-209ENST00000554872 SPRR2DP22532 72 aa6.21□□□□□ -1.42
CCDC88C-209ENST00000554872 KRTAP2-2Q9BYT5 123 aa6.18□□□□□ -1.42
CCDC88C-209ENST00000554872 KRTAP2-1Q9BYU5 128 aa6.18□□□□□ -1.42
CCDC88C-209ENST00000554872 A0A1B0GU33 70 aa6.16□□□□□ -1.42
CCDC88C-209ENST00000554872 SPATA8Q6RVD6 105 aa6.12□□□□□ -1.43
CCDC88C-209ENST00000554872 A0A0D9SG42 100 aa6.11□□□□□ -1.43
CCDC88C-209ENST00000554872 ANAPC13Q9BS18 74 aa6.09□□□□□ -1.43
CCDC88C-209ENST00000554872 KRTAP12-1P59990 96 aa6.07□□□□□ -1.44
CCDC88C-209ENST00000554872 KRTAP19-7Q3SYF9 63 aa6.05□□□□□ -1.44
CCDC88C-209ENST00000554872 LCE3BQ5TA77 95 aa6.05□□□□□ -1.44
CCDC88C-209ENST00000554872 A0A1B0GU69 56 aa6.04□□□□□ -1.44
CCDC88C-209ENST00000554872 SPINT4Q6UDR6 99 aa6.03□□□□□ -1.44
CCDC88C-209ENST00000554872 SMIM26A0A096LP01 95 aa6.01□□□□□ -1.45
CCDC88C-209ENST00000554872 MT1EP04732 61 aa5.99□□□□□ -1.45
CCDC88C-209ENST00000554872 ATP5EP56381 51 aaPredicted RBP5.99□□□□□ -1.45
CCDC88C-209ENST00000554872 LCE5AQ5TCM9 118 aa5.98□□□□□ -1.45
CCDC88C-209ENST00000554872 CCDC179H3BU77 68 aa5.95□□□□□ -1.46
CCDC88C-209ENST00000554872 KRTAP19-3Q7Z4W3 81 aa5.95□□□□□ -1.46
CCDC88C-209ENST00000554872 A8MU10 97 aa5.89□□□□□ -1.47
CCDC88C-209ENST00000554872 PRR15LQ9BU68 103 aa5.89□□□□□ -1.47
CCDC88C-209ENST00000554872 KRTAP19-5Q3LI72 72 aa5.85□□□□□ -1.47
CCDC88C-209ENST00000554872 LINC01558Q9Y6Z2 57 aa5.84□□□□□ -1.47
CCDC88C-209ENST00000554872 MT1GP13640 62 aa5.82□□□□□ -1.48
CCDC88C-209ENST00000554872 TMEM258P61165 79 aa5.81□□□□□ -1.48
CCDC88C-209ENST00000554872 TNP1P09430 55 aa5.79□□□□□ -1.48
CCDC88C-209ENST00000554872 C10orf95Q9H7T3 257 aa5.79□□□□□ -1.48
CCDC88C-209ENST00000554872 PP632Q6XCG6 107 aa5.76□□□□□ -1.49
CCDC88C-209ENST00000554872 LCE3AQ5TA76 89 aa5.73□□□□□ -1.49
CCDC88C-209ENST00000554872 MT1LQ93083 61 aa5.73□□□□□ -1.49
CCDC88C-209ENST00000554872 DSTQ03001 7570 aaKnown RBP5.72□□□□□ -1.49
CCDC88C-209ENST00000554872 UQCR11O14957 56 aa5.7□□□□□ -1.5
CCDC88C-209ENST00000554872 MT1MQ8N339 61 aa5.69□□□□□ -1.5
CCDC88C-209ENST00000554872 LCE4AQ5TA78 99 aa5.56□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 7.2 ms