RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 KRTAP13-4Q3LI77 160 aa8.98□□□□□ -0.97
SYNE3-202ENST00000553340 DMBT1Q9UGM3 2413 aaPredicted RBP8.97□□□□□ -0.97
SYNE3-202ENST00000553340 A0A0D9SG42 100 aa8.97□□□□□ -0.97
SYNE3-202ENST00000553340 KRTAP3-2Q9BYR7 98 aa8.97□□□□□ -0.97
SYNE3-202ENST00000553340 S4R3F8 94 aa8.96□□□□□ -0.97
SYNE3-202ENST00000553340 KRTAP10-8P60410 259 aa8.91□□□□□ -0.98
SYNE3-202ENST00000553340 FAT3Q8TDW7 4589 aa8.91□□□□□ -0.98
SYNE3-202ENST00000553340 XP32Q5T750 250 aa8.89□□□□□ -0.99
SYNE3-202ENST00000553340 KMT2CQ8NEZ4 4911 aaKnown RBP8.85□□□□□ -0.99
SYNE3-202ENST00000553340 P0C880 135 aa8.84□□□□□ -0.99
SYNE3-202ENST00000553340 TNXBP22105 4242 aa8.82□□□□□ -1
SYNE3-202ENST00000553340 TPRXLQ17RH7 258 aa8.82□□□□□ -1
SYNE3-202ENST00000553340 HSPG2P98160 4391 aa8.8□□□□□ -1
SYNE3-202ENST00000553340 LRP1Q07954 4544 aaKnown RBP8.79□□□□□ -1
SYNE3-202ENST00000553340 Q5VSD8 79 aa8.76□□□□□ -1.01
SYNE3-202ENST00000553340 RYR2Q92736 4967 aa8.76□□□□□ -1.01
SYNE3-202ENST00000553340 KRTAP12-2P59991 146 aa8.73□□□□□ -1.01
SYNE3-202ENST00000553340 SPINT4Q6UDR6 99 aa8.73□□□□□ -1.01
SYNE3-202ENST00000553340 C10orf95Q9H7T3 257 aa8.72□□□□□ -1.01
SYNE3-202ENST00000553340 RYR3Q15413 4870 aa8.67□□□□□ -1.02
SYNE3-202ENST00000553340 KRTAP12-1P59990 96 aa8.66□□□□□ -1.02
SYNE3-202ENST00000553340 MYCBP2O75592 4640 aa8.64□□□□□ -1.03
SYNE3-202ENST00000553340 M0QZ58 72 aa8.6□□□□□ -1.03
SYNE3-202ENST00000553340 MT1HL1P0DM35 61 aa8.54□□□□□ -1.04
SYNE3-202ENST00000553340 KRTAP15-1Q3LI76 137 aa8.51□□□□□ -1.05
SYNE3-202ENST00000553340 KRTAP17-1Q9BYP8 105 aa8.48□□□□□ -1.05
SYNE3-202ENST00000553340 RYR1P21817 5038 aa8.45□□□□□ -1.06
SYNE3-202ENST00000553340 LPAP08519 4548 aa8.43□□□□□ -1.06
SYNE3-202ENST00000553340 NDUFAF8A1L188 74 aa8.39□□□□□ -1.07
SYNE3-202ENST00000553340 LRP2P98164 4655 aa8.37□□□□□ -1.07
SYNE3-202ENST00000553340 EPPK1P58107 5090 aaKnown RBP8.35□□□□□ -1.07
SYNE3-202ENST00000553340 R4GN34 69 aa8.34□□□□□ -1.07
SYNE3-202ENST00000553340 KIAA1109Q2LD37 5005 aa8.28□□□□□ -1.08
SYNE3-202ENST00000553340 SEC61BP60468 96 aaKnown RBP8.16□□□□□ -1.1
SYNE3-202ENST00000553340 LORP23490 312 aaPredicted RBP8.15□□□□□ -1.11
SYNE3-202ENST00000553340 ABCA13Q86UQ4 5058 aa8.08□□□□□ -1.12
SYNE3-202ENST00000553340 BIRC6Q9NR09 4857 aa8.07□□□□□ -1.12
SYNE3-202ENST00000553340 PLAC4Q8WY50 150 aa8.07□□□□□ -1.12
SYNE3-202ENST00000553340 MUC17Q685J3 4493 aa8.02□□□□□ -1.13
SYNE3-202ENST00000553340 KRTAP4-1Q9BYQ7 146 aa8□□□□□ -1.13
SYNE3-202ENST00000553340 KRTAP4-5Q9BYR2 181 aa7.98□□□□□ -1.13
SYNE3-202ENST00000553340 PP632Q6XCG6 107 aa7.96□□□□□ -1.14
SYNE3-202ENST00000553340 CAMK2N1Q7Z7J9 78 aa7.95□□□□□ -1.14
SYNE3-202ENST00000553340 HERC2O95714 4834 aa7.94□□□□□ -1.14
SYNE3-202ENST00000553340 KRTAP19-2Q3LHN2 52 aa7.9□□□□□ -1.15
SYNE3-202ENST00000553340 J3QL48 77 aa7.82□□□□□ -1.16
SYNE3-202ENST00000553340 LUZP6Q538Z0 58 aa7.78□□□□□ -1.16
SYNE3-202ENST00000553340 PCLOQ9Y6V0 5065 aa7.72□□□□□ -1.17
SYNE3-202ENST00000553340 TNP1P09430 55 aa7.68□□□□□ -1.18
SYNE3-202ENST00000553340 KRTAP23-1A1A580 65 aa7.63□□□□□ -1.19
SYNE3-202ENST00000553340 FLGP20930 4061 aaPredicted RBP7.63□□□□□ -1.19
SYNE3-202ENST00000553340 MUC2Q02817 5179 aa7.55□□□□□ -1.2
SYNE3-202ENST00000553340 A0A0A0MQY5 61 aa7.54□□□□□ -1.2
SYNE3-202ENST00000553340 HERC1Q15751 4861 aa7.5□□□□□ -1.21
SYNE3-202ENST00000553340 SPRR5A0A1B0GTR4 108 aa7.47□□□□□ -1.21
SYNE3-202ENST00000553340 SPRR2GQ9BYE4 73 aa7.39□□□□□ -1.23
SYNE3-202ENST00000553340 LCE2CQ5TA81 110 aa7.33□□□□□ -1.24
SYNE3-202ENST00000553340 KRTAP19-1Q8IUB9 90 aa7.32□□□□□ -1.24
SYNE3-202ENST00000553340 HMCN2Q8NDA2 5059 aa7.31□□□□□ -1.24
SYNE3-202ENST00000553340 M0R2T5 61 aa7.23□□□□□ -1.25
SYNE3-202ENST00000553340 LCE3AQ5TA76 89 aa7.22□□□□□ -1.25
SYNE3-202ENST00000553340 FAT4Q6V0I7 4981 aa7.17□□□□□ -1.26
SYNE3-202ENST00000553340 MT1HP80294 61 aa7.13□□□□□ -1.27
SYNE3-202ENST00000553340 KRTAP10-10P60014 251 aa7.11□□□□□ -1.27
SYNE3-202ENST00000553340 MT1FP04733 61 aa7.09□□□□□ -1.27
SYNE3-202ENST00000553340 MT2AP02795 61 aa7.08□□□□□ -1.28
SYNE3-202ENST00000553340 UBR4Q5T4S7 5183 aa7.06□□□□□ -1.28
SYNE3-202ENST00000553340 KRTAP8-1Q8IUC2 63 aa7.05□□□□□ -1.28
SYNE3-202ENST00000553340 KRTAP19-8Q3LI54 63 aa7.01□□□□□ -1.29
SYNE3-202ENST00000553340 KRTAP9-8Q9BYQ0 159 aa7□□□□□ -1.29
SYNE3-202ENST00000553340 KRTAP10-5P60370 271 aa6.94□□□□□ -1.3
SYNE3-202ENST00000553340 RNF213Q63HN8 5207 aa6.93□□□□□ -1.3
SYNE3-202ENST00000553340 MT1XP80297 61 aa6.91□□□□□ -1.3
SYNE3-202ENST00000553340 MT1BP07438 61 aa6.91□□□□□ -1.3
SYNE3-202ENST00000553340 KRTAP12-3P60328 96 aa6.88□□□□□ -1.31
SYNE3-202ENST00000553340 KRTAP10-12P60413 245 aa6.87□□□□□ -1.31
SYNE3-202ENST00000553340 PRO2289Q9P1D8 64 aa6.8□□□□□ -1.32
SYNE3-202ENST00000553340 INE1O15225 51 aa6.78□□□□□ -1.32
SYNE3-202ENST00000553340 KRTAP10-7P60409 375 aaPredicted RBP6.74□□□□□ -1.33
SYNE3-202ENST00000553340 KRTAP9-3Q9BYQ3 159 aa6.69□□□□□ -1.34
SYNE3-202ENST00000553340 KRTAP19-5Q3LI72 72 aa6.5□□□□□ -1.37
SYNE3-202ENST00000553340 LCE3CQ5T5A8 94 aa6.48□□□□□ -1.37
SYNE3-202ENST00000553340 LCE2AQ5TA79 106 aaPredicted RBP6.41□□□□□ -1.38
SYNE3-202ENST00000553340 LCE2BO14633 110 aa6.38□□□□□ -1.39
SYNE3-202ENST00000553340 KRTAP4-8A0A0G2JLE6 195 aa6.27□□□□□ -1.41
SYNE3-202ENST00000553340 KRTAP4-8Q9BYQ9 185 aa6.27□□□□□ -1.41
SYNE3-202ENST00000553340 KRTAP9-6A8MVA2 160 aa6.24□□□□□ -1.41
SYNE3-202ENST00000553340 KMT2DO14686 5537 aa6.22□□□□□ -1.41
SYNE3-202ENST00000553340 USH2AO75445 5202 aa6.18□□□□□ -1.42
SYNE3-202ENST00000553340 KRTAP19-7Q3SYF9 63 aa6.15□□□□□ -1.42
SYNE3-202ENST00000553340 KRTAP2-3P0C7H8 128 aa6.12□□□□□ -1.43
SYNE3-202ENST00000553340 KRTAP2-4Q9BYR9 128 aa6.12□□□□□ -1.43
SYNE3-202ENST00000553340 KRTAP2-1Q9BYU5 128 aa6.12□□□□□ -1.43
SYNE3-202ENST00000553340 KRTAP19-4Q3LI73 84 aa6.1□□□□□ -1.43
SYNE3-202ENST00000553340 KRTAP9-6A0A140TA67 174 aa6.09□□□□□ -1.44
SYNE3-202ENST00000553340 KRTAP4-7Q9BYR0 210 aa6.09□□□□□ -1.44
SYNE3-202ENST00000553340 KRTAP9-2Q9BYQ4 174 aa6.03□□□□□ -1.44
SYNE3-202ENST00000553340 MT1LQ93083 61 aa6□□□□□ -1.45
SYNE3-202ENST00000553340 MT1EP04732 61 aa5.96□□□□□ -1.45
SYNE3-202ENST00000553340 LCE2DQ5TA82 110 aaPredicted RBP5.86□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 67.6 ms