RNA–Protein interactions for RNA: ENST00000550872.1

CHMP1A-209, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 2

Gene CHMP1A, Length 533 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-209ENST00000550872 A8MUN3 132 aa7.67□□□□□ -1.18
CHMP1A-209ENST00000550872 KRTAP3-3Q9BYR6 98 aa7.62□□□□□ -1.19
CHMP1A-209ENST00000550872 SERP2Q8N6R1 65 aa7.61□□□□□ -1.19
CHMP1A-209ENST00000550872 KRTAP9-3Q9BYQ3 159 aa7.6□□□□□ -1.19
CHMP1A-209ENST00000550872 KRTAP9-7A8MTY7 169 aa7.59□□□□□ -1.19
CHMP1A-209ENST00000550872 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.59□□□□□ -1.19
CHMP1A-209ENST00000550872 NDUFC1O43677 76 aa7.58□□□□□ -1.2
CHMP1A-209ENST00000550872 SNURFQ9Y675 71 aa7.58□□□□□ -1.2
CHMP1A-209ENST00000550872 DMAC1Q96GE9 116 aa7.57□□□□□ -1.2
CHMP1A-209ENST00000550872 C20orf197Q8N268 126 aa7.56□□□□□ -1.2
CHMP1A-209ENST00000550872 LCE2BO14633 110 aa7.49□□□□□ -1.21
CHMP1A-209ENST00000550872 ACYP2P14621 99 aa7.47□□□□□ -1.21
CHMP1A-209ENST00000550872 COX7CP15954 63 aa7.47□□□□□ -1.21
CHMP1A-209ENST00000550872 USH2AO75445 5202 aa7.47□□□□□ -1.21
CHMP1A-209ENST00000550872 SSPOA2VEC9 5147 aa7.47□□□□□ -1.21
CHMP1A-209ENST00000550872 SPANXA2-OT1Q8N9U9 137 aa7.42□□□□□ -1.22
CHMP1A-209ENST00000550872 H0YAA0 97 aa7.4□□□□□ -1.22
CHMP1A-209ENST00000550872 ANAPC13Q9BS18 74 aa7.38□□□□□ -1.23
CHMP1A-209ENST00000550872 FCGBPQ9Y6R7 5405 aaPredicted RBP7.38□□□□□ -1.23
CHMP1A-209ENST00000550872 KRTAP19-1Q8IUB9 90 aa7.37□□□□□ -1.23
CHMP1A-209ENST00000550872 ADM2Q7Z4H4 148 aa7.36□□□□□ -1.23
CHMP1A-209ENST00000550872 CHKB-CPT1BH3BT56 60 aa7.35□□□□□ -1.23
CHMP1A-209ENST00000550872 SPTSSBQ8NFR3 76 aa7.32□□□□□ -1.24
CHMP1A-209ENST00000550872 CRIPTQ9P021 101 aa7.32□□□□□ -1.24
CHMP1A-209ENST00000550872 SPRR2GQ9BYE4 73 aa7.3□□□□□ -1.24
CHMP1A-209ENST00000550872 CYSTM1Q9H1C7 97 aa7.28□□□□□ -1.24
CHMP1A-209ENST00000550872 H7BZZ5 65 aa7.27□□□□□ -1.25
CHMP1A-209ENST00000550872 MACF1Q9UPN3 7388 aaKnown RBP7.23□□□□□ -1.25
CHMP1A-209ENST00000550872 CCDC179H3BU77 68 aa7.22□□□□□ -1.25
CHMP1A-209ENST00000550872 P0C880 135 aa7.22□□□□□ -1.25
CHMP1A-209ENST00000550872 KRTAP19-8Q3LI54 63 aa7.21□□□□□ -1.26
CHMP1A-209ENST00000550872 KRTAP19-6Q3LI70 58 aa7.21□□□□□ -1.26
CHMP1A-209ENST00000550872 COA5Q86WW8 74 aa7.21□□□□□ -1.26
CHMP1A-209ENST00000550872 Q5VV11 94 aa7.2□□□□□ -1.26
CHMP1A-209ENST00000550872 KRTAP3-2Q9BYR7 98 aa7.2□□□□□ -1.26
CHMP1A-209ENST00000550872 MT1BP07438 61 aa7.17□□□□□ -1.26
CHMP1A-209ENST00000550872 R4GN34 69 aa7.15□□□□□ -1.26
CHMP1A-209ENST00000550872 SYNE2Q8WXH0 6885 aaKnown RBP7.15□□□□□ -1.27
CHMP1A-209ENST00000550872 M0QZ58 72 aa7.11□□□□□ -1.27
CHMP1A-209ENST00000550872 KRTAP6-3Q3LI67 103 aa7.04□□□□□ -1.28
CHMP1A-209ENST00000550872 ATP5EP56381 51 aaPredicted RBP7.02□□□□□ -1.29
CHMP1A-209ENST00000550872 LINC01554Q52M75 96 aa7.01□□□□□ -1.29
CHMP1A-209ENST00000550872 A6NN06 94 aa6.99□□□□□ -1.29
CHMP1A-209ENST00000550872 SEC61GP60059 68 aa6.98□□□□□ -1.29
CHMP1A-209ENST00000550872 PLAC4Q8WY50 150 aa6.97□□□□□ -1.29
CHMP1A-209ENST00000550872 SERP1Q9Y6X1 66 aa6.97□□□□□ -1.29
CHMP1A-209ENST00000550872 TMEM258P61165 79 aa6.95□□□□□ -1.3
CHMP1A-209ENST00000550872 KRTAP10-5P60370 271 aa6.94□□□□□ -1.3
CHMP1A-209ENST00000550872 KRTAP13-4Q3LI77 160 aa6.87□□□□□ -1.31
CHMP1A-209ENST00000550872 A0A1B0GU69 56 aa6.84□□□□□ -1.31
CHMP1A-209ENST00000550872 A0A1B0GU33 70 aa6.83□□□□□ -1.32
CHMP1A-209ENST00000550872 PRO2289Q9P1D8 64 aa6.82□□□□□ -1.32
CHMP1A-209ENST00000550872 MT1XP80297 61 aa6.79□□□□□ -1.32
CHMP1A-209ENST00000550872 SPATA8Q6RVD6 105 aa6.76□□□□□ -1.33
CHMP1A-209ENST00000550872 NEBP20929 6669 aa6.73□□□□□ -1.33
CHMP1A-209ENST00000550872 A0A0D9SG42 100 aa6.73□□□□□ -1.33
CHMP1A-209ENST00000550872 PRR15LQ9BU68 103 aa6.73□□□□□ -1.33
CHMP1A-209ENST00000550872 LINC01558Q9Y6Z2 57 aa6.73□□□□□ -1.33
CHMP1A-209ENST00000550872 PCP4P48539 62 aa6.69□□□□□ -1.34
CHMP1A-209ENST00000550872 MUC12Q9UKN1 5478 aa6.65□□□□□ -1.34
CHMP1A-209ENST00000550872 CAMK2N1Q7Z7J9 78 aa6.64□□□□□ -1.35
CHMP1A-209ENST00000550872 SMIM26A0A096LP01 95 aa6.63□□□□□ -1.35
CHMP1A-209ENST00000550872 KRTAP5-9P26371 169 aa6.62□□□□□ -1.35
CHMP1A-209ENST00000550872 KRTAP20-1Q3LI63 56 aa6.62□□□□□ -1.35
CHMP1A-209ENST00000550872 SPINT4Q6UDR6 99 aa6.61□□□□□ -1.35
CHMP1A-209ENST00000550872 A8MU10 97 aa6.57□□□□□ -1.36
CHMP1A-209ENST00000550872 KRTAP12-1P59990 96 aa6.57□□□□□ -1.36
CHMP1A-209ENST00000550872 KRTAP12-2P59991 146 aa6.56□□□□□ -1.36
CHMP1A-209ENST00000550872 V9GYY9 64 aa6.53□□□□□ -1.36
CHMP1A-209ENST00000550872 UQCR11O14957 56 aa6.51□□□□□ -1.37
CHMP1A-209ENST00000550872 KMT2DO14686 5537 aa6.51□□□□□ -1.37
CHMP1A-209ENST00000550872 KRTAP10-7P60409 375 aaPredicted RBP6.5□□□□□ -1.37
CHMP1A-209ENST00000550872 Q1T7F1 81 aa6.49□□□□□ -1.37
CHMP1A-209ENST00000550872 MDN1Q9NU22 5596 aa6.47□□□□□ -1.37
CHMP1A-209ENST00000550872 PSPHP1O15172 72 aa6.46□□□□□ -1.38
CHMP1A-209ENST00000550872 KRTAP10-12P60413 245 aa6.46□□□□□ -1.38
CHMP1A-209ENST00000550872 RPS28P62857 69 aaKnown RBP6.44□□□□□ -1.38
CHMP1A-209ENST00000550872 KRTAP4-8A0A0G2JLE6 195 aa6.42□□□□□ -1.38
CHMP1A-209ENST00000550872 KRTAP8-1Q8IUC2 63 aa6.42□□□□□ -1.38
CHMP1A-209ENST00000550872 KRTAP4-8Q9BYQ9 185 aa6.42□□□□□ -1.38
CHMP1A-209ENST00000550872 KRTAP2-3P0C7H8 128 aa6.4□□□□□ -1.38
CHMP1A-209ENST00000550872 KRTAP2-4Q9BYR9 128 aa6.4□□□□□ -1.38
CHMP1A-209ENST00000550872 MIR22HGQ0VDD5 57 aa6.39□□□□□ -1.39
CHMP1A-209ENST00000550872 SPRR2FQ96RM1 72 aa6.34□□□□□ -1.39
CHMP1A-209ENST00000550872 A6NED7 52 aa6.26□□□□□ -1.41
CHMP1A-209ENST00000550872 SPRR2EP22531 72 aa6.26□□□□□ -1.41
CHMP1A-209ENST00000550872 SPRR2BP35325 72 aa6.26□□□□□ -1.41
CHMP1A-209ENST00000550872 SPRR2AP35326 72 aa6.26□□□□□ -1.41
CHMP1A-209ENST00000550872 C10orf95Q9H7T3 257 aa6.26□□□□□ -1.41
CHMP1A-209ENST00000550872 K7ERS5 55 aa6.23□□□□□ -1.41
CHMP1A-209ENST00000550872 TNP1P09430 55 aa6.19□□□□□ -1.42
CHMP1A-209ENST00000550872 LCE1AQ5T7P2 110 aa6.18□□□□□ -1.42
CHMP1A-209ENST00000550872 KRTAP2-2Q9BYT5 123 aa6.18□□□□□ -1.42
CHMP1A-209ENST00000550872 KRTAP2-1Q9BYU5 128 aa6.18□□□□□ -1.42
CHMP1A-209ENST00000550872 SPRR2DP22532 72 aa6.06□□□□□ -1.44
CHMP1A-209ENST00000550872 KRTAP19-7Q3SYF9 63 aa6.06□□□□□ -1.44
CHMP1A-209ENST00000550872 LCE3AQ5TA76 89 aa6.04□□□□□ -1.44
CHMP1A-209ENST00000550872 CDC42SE1Q9NRR8 79 aa6.03□□□□□ -1.44
CHMP1A-209ENST00000550872 KRTAP19-5Q3LI72 72 aa6.02□□□□□ -1.45
CHMP1A-209ENST00000550872 MT1EP04732 61 aa6□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 83 ms