RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 KRTAP4-8Q9BYQ9 185 aa7.28□□□□□ -1.24
VPS29-207ENST00000549970 ACYP1P07311 99 aa7.27□□□□□ -1.25
VPS29-207ENST00000549970 HIST1H4AP62805 103 aaKnown RBP7.25□□□□□ -1.25
VPS29-207ENST00000549970 ATP5EP2Q5VTU8 51 aa7.24□□□□□ -1.25
VPS29-207ENST00000549970 FAM240AA0A1B0GVK7 77 aa7.22□□□□□ -1.25
VPS29-207ENST00000549970 H0Y9P7 68 aa7.22□□□□□ -1.25
VPS29-207ENST00000549970 UQCRQO14949 82 aa7.21□□□□□ -1.26
VPS29-207ENST00000549970 KRTAP10-5P60370 271 aa7.19□□□□□ -1.26
VPS29-207ENST00000549970 ATOX1O00244 68 aa7.18□□□□□ -1.26
VPS29-207ENST00000549970 IMUPQ9GZP8 106 aa7.17□□□□□ -1.26
VPS29-207ENST00000549970 CRIPTQ9P021 101 aa7.17□□□□□ -1.26
VPS29-207ENST00000549970 NDUFC1O43677 76 aa7.16□□□□□ -1.26
VPS29-207ENST00000549970 MUC12Q9UKN1 5478 aa7.16□□□□□ -1.26
VPS29-207ENST00000549970 NEBP20929 6669 aa7.14□□□□□ -1.27
VPS29-207ENST00000549970 LINC00643Q86TS7 51 aa7.1□□□□□ -1.27
VPS29-207ENST00000549970 LINC00208Q96KT6 92 aa7.09□□□□□ -1.27
VPS29-207ENST00000549970 A8MUN3 132 aa7.08□□□□□ -1.28
VPS29-207ENST00000549970 H0YAA0 97 aa7.08□□□□□ -1.28
VPS29-207ENST00000549970 ADM2Q7Z4H4 148 aa7.05□□□□□ -1.28
VPS29-207ENST00000549970 MP68P56378 58 aa7.03□□□□□ -1.28
VPS29-207ENST00000549970 OCR1Q9BZK8 76 aa7.02□□□□□ -1.29
VPS29-207ENST00000549970 KRTAP5-9P26371 169 aa6.97□□□□□ -1.29
VPS29-207ENST00000549970 A0A1B0GV90 55 aa6.96□□□□□ -1.3
VPS29-207ENST00000549970 KMT2DO14686 5537 aa6.94□□□□□ -1.3
VPS29-207ENST00000549970 MDN1Q9NU22 5596 aa6.93□□□□□ -1.3
VPS29-207ENST00000549970 LCE3BQ5TA77 95 aa6.91□□□□□ -1.3
VPS29-207ENST00000549970 H3BPC8 53 aa6.89□□□□□ -1.31
VPS29-207ENST00000549970 PRO2289Q9P1D8 64 aa6.89□□□□□ -1.31
VPS29-207ENST00000549970 P0C880 135 aa6.88□□□□□ -1.31
VPS29-207ENST00000549970 PLAC4Q8WY50 150 aa6.88□□□□□ -1.31
VPS29-207ENST00000549970 R4GN34 69 aa6.88□□□□□ -1.31
VPS29-207ENST00000549970 MT1XP80297 61 aa6.87□□□□□ -1.31
VPS29-207ENST00000549970 SCGB1A1P11684 91 aa6.86□□□□□ -1.31
VPS29-207ENST00000549970 KRTAP20-1Q3LI63 56 aa6.86□□□□□ -1.31
VPS29-207ENST00000549970 DMAC1Q96GE9 116 aa6.86□□□□□ -1.31
VPS29-207ENST00000549970 J3QR89 54 aa6.85□□□□□ -1.31
VPS29-207ENST00000549970 C20orf197Q8N268 126 aa6.85□□□□□ -1.31
VPS29-207ENST00000549970 M0QZ58 72 aa6.83□□□□□ -1.32
VPS29-207ENST00000549970 KRTAP4-8A0A0G2JLE6 195 aa6.79□□□□□ -1.32
VPS29-207ENST00000549970 KRTAP9-9Q9BYP9 154 aa6.79□□□□□ -1.32
VPS29-207ENST00000549970 KRTAP9-4Q9BYQ2 154 aa6.79□□□□□ -1.32
VPS29-207ENST00000549970 SPRR2FQ96RM1 72 aa6.78□□□□□ -1.32
VPS29-207ENST00000549970 LINC01554Q52M75 96 aa6.75□□□□□ -1.33
VPS29-207ENST00000549970 KRTAP4-12Q9BQ66 201 aa6.74□□□□□ -1.33
VPS29-207ENST00000549970 KRTAP8-1Q8IUC2 63 aa6.72□□□□□ -1.33
VPS29-207ENST00000549970 TRAV7A0A075B6U4 112 aa6.7□□□□□ -1.34
VPS29-207ENST00000549970 SPRR2EP22531 72 aa6.7□□□□□ -1.34
VPS29-207ENST00000549970 SPRR2BP35325 72 aa6.7□□□□□ -1.34
VPS29-207ENST00000549970 SPRR2AP35326 72 aa6.7□□□□□ -1.34
VPS29-207ENST00000549970 KRTAP12-2P59991 146 aa6.7□□□□□ -1.34
VPS29-207ENST00000549970 ACYP2P14621 99 aa6.68□□□□□ -1.34
VPS29-207ENST00000549970 MT-ATP8P03928 68 aa6.64□□□□□ -1.35
VPS29-207ENST00000549970 KRTAP2-3P0C7H8 128 aa6.64□□□□□ -1.35
VPS29-207ENST00000549970 KRTAP2-4Q9BYR9 128 aa6.64□□□□□ -1.35
VPS29-207ENST00000549970 SPTSSBQ8NFR3 76 aa6.61□□□□□ -1.35
VPS29-207ENST00000549970 KRTAP4-7Q9BYR0 210 aa6.61□□□□□ -1.35
VPS29-207ENST00000549970 SMIM20Q8N5G0 67 aa6.6□□□□□ -1.35
VPS29-207ENST00000549970 CHKB-CPT1BH3BT56 60 aa6.58□□□□□ -1.36
VPS29-207ENST00000549970 LCE1AQ5T7P2 110 aa6.58□□□□□ -1.36
VPS29-207ENST00000549970 KRTAP10-7P60409 375 aaPredicted RBP6.57□□□□□ -1.36
VPS29-207ENST00000549970 K7ERU9 68 aa6.53□□□□□ -1.36
VPS29-207ENST00000549970 SNURFQ9Y675 71 aa6.53□□□□□ -1.36
VPS29-207ENST00000549970 KRTAP10-12P60413 245 aa6.51□□□□□ -1.37
VPS29-207ENST00000549970 SPRR2DP22532 72 aa6.48□□□□□ -1.37
VPS29-207ENST00000549970 LCE1DQ5T752 114 aa6.47□□□□□ -1.37
VPS29-207ENST00000549970 KRTAP2-2Q9BYT5 123 aa6.43□□□□□ -1.38
VPS29-207ENST00000549970 KRTAP2-1Q9BYU5 128 aa6.43□□□□□ -1.38
VPS29-207ENST00000549970 SPANXA2-OT1Q8N9U9 137 aa6.42□□□□□ -1.38
VPS29-207ENST00000549970 KRTAP13-4Q3LI77 160 aa6.38□□□□□ -1.39
VPS29-207ENST00000549970 SERP2Q8N6R1 65 aa6.36□□□□□ -1.39
VPS29-207ENST00000549970 CAMK2N1Q7Z7J9 78 aa6.32□□□□□ -1.4
VPS29-207ENST00000549970 KRTAP4-9Q9BYQ8 210 aa6.32□□□□□ -1.4
VPS29-207ENST00000549970 KRTAP4-2Q9BYR5 136 aa6.31□□□□□ -1.4
VPS29-207ENST00000549970 COA5Q86WW8 74 aa6.28□□□□□ -1.4
VPS29-207ENST00000549970 A0A0D9SG42 100 aa6.21□□□□□ -1.42
VPS29-207ENST00000549970 SEC61GP60059 68 aa6.2□□□□□ -1.42
VPS29-207ENST00000549970 SERP1Q9Y6X1 66 aa6.2□□□□□ -1.42
VPS29-207ENST00000549970 SPATA8Q6RVD6 105 aa6.16□□□□□ -1.42
VPS29-207ENST00000549970 COX7CP15954 63 aa6.13□□□□□ -1.43
VPS29-207ENST00000549970 KRTAP19-7Q3SYF9 63 aa6.13□□□□□ -1.43
VPS29-207ENST00000549970 SPINT4Q6UDR6 99 aa6.12□□□□□ -1.43
VPS29-207ENST00000549970 A0A1B0GU33 70 aa6.1□□□□□ -1.43
VPS29-207ENST00000549970 MT1EP04732 61 aa6.09□□□□□ -1.43
VPS29-207ENST00000549970 LCE5AQ5TCM9 118 aa6.08□□□□□ -1.44
VPS29-207ENST00000549970 CYSTM1Q9H1C7 97 aa6.08□□□□□ -1.44
VPS29-207ENST00000549970 H7BZZ5 65 aa6.07□□□□□ -1.44
VPS29-207ENST00000549970 KRTAP19-3Q7Z4W3 81 aa6.06□□□□□ -1.44
VPS29-207ENST00000549970 KRTAP12-1P59990 96 aa6.05□□□□□ -1.44
VPS29-207ENST00000549970 DSTQ03001 7570 aaKnown RBP6.05□□□□□ -1.44
VPS29-207ENST00000549970 KRTAP4-11Q9BYQ6 195 aa6.01□□□□□ -1.45
VPS29-207ENST00000549970 KRTAP5-3Q6L8H2 238 aa6□□□□□ -1.45
VPS29-207ENST00000549970 KRTAP19-5Q3LI72 72 aa5.97□□□□□ -1.45
VPS29-207ENST00000549970 A0A1B0GU69 56 aa5.96□□□□□ -1.46
VPS29-207ENST00000549970 SMIM26A0A096LP01 95 aa5.93□□□□□ -1.46
VPS29-207ENST00000549970 A8MU10 97 aa5.91□□□□□ -1.46
VPS29-207ENST00000549970 MT1GP13640 62 aa5.89□□□□□ -1.47
VPS29-207ENST00000549970 H3BS24 57 aa5.88□□□□□ -1.47
VPS29-207ENST00000549970 ANAPC13Q9BS18 74 aa5.86□□□□□ -1.47
VPS29-207ENST00000549970 PP632Q6XCG6 107 aa5.85□□□□□ -1.47
VPS29-207ENST00000549970 GPR98Q8WXG9 6306 aa5.82□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms