RNA–Protein interactions for RNA: ENST00000539417.6

RPAIN-206, Transcript of RPA interacting protein, humanhuman

TSL 2

Gene RPAIN, Length 1,471 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPAIN-206ENST00000539417 C4orf26Q17RF5 130 aa7.67□□□□□ -1.18
RPAIN-206ENST00000539417 FSIP2Q5CZC0 6907 aa7.66□□□□□ -1.18
RPAIN-206ENST00000539417 H0Y9P7 68 aa7.64□□□□□ -1.19
RPAIN-206ENST00000539417 MT2AP02795 61 aa7.63□□□□□ -1.19
RPAIN-206ENST00000539417 H1FX-AS1Q4G0G2 97 aa7.62□□□□□ -1.19
RPAIN-206ENST00000539417 TRAV22A0A0B4J277 110 aa7.62□□□□□ -1.19
RPAIN-206ENST00000539417 KRTAP3-1Q9BYR8 98 aa7.62□□□□□ -1.19
RPAIN-206ENST00000539417 SERP1Q9Y6X1 66 aa7.61□□□□□ -1.19
RPAIN-206ENST00000539417 LINC00208Q96KT6 92 aa7.6□□□□□ -1.19
RPAIN-206ENST00000539417 MT1FP04733 61 aa7.59□□□□□ -1.19
RPAIN-206ENST00000539417 CYP4F30PQ9H0H9 118 aa7.57□□□□□ -1.2
RPAIN-206ENST00000539417 C1orf64Q8NEQ6 169 aa7.56□□□□□ -1.2
RPAIN-206ENST00000539417 SPANXA2-OT1Q8N9U9 137 aa7.51□□□□□ -1.21
RPAIN-206ENST00000539417 KRTAP9-6A0A140TA67 174 aa7.49□□□□□ -1.21
RPAIN-206ENST00000539417 LOC101927531A0A1B0GV80 90 aa7.49□□□□□ -1.21
RPAIN-206ENST00000539417 USH2AO75445 5202 aa7.49□□□□□ -1.21
RPAIN-206ENST00000539417 KRTAP10-10P60014 251 aa7.49□□□□□ -1.21
RPAIN-206ENST00000539417 KRTAP9-3Q9BYQ3 159 aa7.47□□□□□ -1.21
RPAIN-206ENST00000539417 CRCT1Q9UGL9 99 aa7.44□□□□□ -1.22
RPAIN-206ENST00000539417 SMIM26A0A096LP01 95 aa7.43□□□□□ -1.22
RPAIN-206ENST00000539417 LCA10Q71F78 164 aa7.42□□□□□ -1.22
RPAIN-206ENST00000539417 S4R3F8 94 aa7.42□□□□□ -1.22
RPAIN-206ENST00000539417 SSPOA2VEC9 5147 aa7.38□□□□□ -1.23
RPAIN-206ENST00000539417 CSAG1Q6PB30 78 aa7.3□□□□□ -1.24
RPAIN-206ENST00000539417 KRTAP4-8Q9BYQ9 185 aa7.3□□□□□ -1.24
RPAIN-206ENST00000539417 COA5Q86WW8 74 aa7.26□□□□□ -1.25
RPAIN-206ENST00000539417 Q1T7F1 81 aa7.24□□□□□ -1.25
RPAIN-206ENST00000539417 V9GYY9 64 aa7.24□□□□□ -1.25
RPAIN-206ENST00000539417 ACYP2P14621 99 aa7.22□□□□□ -1.25
RPAIN-206ENST00000539417 A8MUN3 132 aa7.21□□□□□ -1.26
RPAIN-206ENST00000539417 DMAC1Q96GE9 116 aa7.21□□□□□ -1.26
RPAIN-206ENST00000539417 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.18□□□□□ -1.26
RPAIN-206ENST00000539417 KRTAP19-1Q8IUB9 90 aa7.18□□□□□ -1.26
RPAIN-206ENST00000539417 FCGBPQ9Y6R7 5405 aaPredicted RBP7.15□□□□□ -1.26
RPAIN-206ENST00000539417 CHKB-CPT1BH3BT56 60 aa7.11□□□□□ -1.27
RPAIN-206ENST00000539417 SPRR2GQ9BYE4 73 aa7.07□□□□□ -1.28
RPAIN-206ENST00000539417 LINC01558Q9Y6Z2 57 aa7.06□□□□□ -1.28
RPAIN-206ENST00000539417 PSPHP1O15172 72 aa7.04□□□□□ -1.28
RPAIN-206ENST00000539417 KRTAP19-6Q3LI70 58 aa7.04□□□□□ -1.28
RPAIN-206ENST00000539417 H0YAA0 97 aa7.04□□□□□ -1.28
RPAIN-206ENST00000539417 ADM2Q7Z4H4 148 aa7.04□□□□□ -1.28
RPAIN-206ENST00000539417 MT1BP07438 61 aa7.03□□□□□ -1.28
RPAIN-206ENST00000539417 PRR15LQ9BU68 103 aa7.02□□□□□ -1.29
RPAIN-206ENST00000539417 KRTAP19-8Q3LI54 63 aa7.01□□□□□ -1.29
RPAIN-206ENST00000539417 Q5VV11 94 aa6.99□□□□□ -1.29
RPAIN-206ENST00000539417 SPTSSBQ8NFR3 76 aa6.96□□□□□ -1.3
RPAIN-206ENST00000539417 MACF1Q9UPN3 7388 aaKnown RBP6.95□□□□□ -1.3
RPAIN-206ENST00000539417 P0C880 135 aa6.95□□□□□ -1.3
RPAIN-206ENST00000539417 BRK1Q8WUW1 75 aa6.95□□□□□ -1.3
RPAIN-206ENST00000539417 CRIPTQ9P021 101 aa6.94□□□□□ -1.3
RPAIN-206ENST00000539417 PRO0628Q9UI54 55 aa6.94□□□□□ -1.3
RPAIN-206ENST00000539417 LCE3BQ5TA77 95 aa6.92□□□□□ -1.3
RPAIN-206ENST00000539417 SVIPQ8NHG7 77 aa6.89□□□□□ -1.31
RPAIN-206ENST00000539417 A0A1B0GU69 56 aa6.88□□□□□ -1.31
RPAIN-206ENST00000539417 A6NED7 52 aa6.86□□□□□ -1.31
RPAIN-206ENST00000539417 SYNE2Q8WXH0 6885 aaKnown RBP6.84□□□□□ -1.31
RPAIN-206ENST00000539417 KRTAP4-8A0A0G2JLE6 195 aa6.81□□□□□ -1.32
RPAIN-206ENST00000539417 SEC61GP60059 68 aa6.81□□□□□ -1.32
RPAIN-206ENST00000539417 KRTAP9-9Q9BYP9 154 aa6.79□□□□□ -1.32
RPAIN-206ENST00000539417 KRTAP9-4Q9BYQ2 154 aa6.79□□□□□ -1.32
RPAIN-206ENST00000539417 CDC42SE1Q9NRR8 79 aa6.79□□□□□ -1.32
RPAIN-206ENST00000539417 A6NN06 94 aa6.78□□□□□ -1.32
RPAIN-206ENST00000539417 KRTAP10-5P60370 271 aa6.78□□□□□ -1.32
RPAIN-206ENST00000539417 KRTAP4-12Q9BQ66 201 aa6.78□□□□□ -1.32
RPAIN-206ENST00000539417 R4GN34 69 aa6.78□□□□□ -1.32
RPAIN-206ENST00000539417 KRTAP9-7A8MTY7 169 aa6.77□□□□□ -1.33
RPAIN-206ENST00000539417 M0QZ58 72 aa6.77□□□□□ -1.33
RPAIN-206ENST00000539417 UQCR11O14957 56 aa6.73□□□□□ -1.33
RPAIN-206ENST00000539417 LINC01554Q52M75 96 aa6.68□□□□□ -1.34
RPAIN-206ENST00000539417 SPATA8Q6RVD6 105 aa6.67□□□□□ -1.34
RPAIN-206ENST00000539417 A8MU10 97 aa6.66□□□□□ -1.34
RPAIN-206ENST00000539417 MIR22HGQ0VDD5 57 aa6.66□□□□□ -1.34
RPAIN-206ENST00000539417 MT1XP80297 61 aa6.64□□□□□ -1.35
RPAIN-206ENST00000539417 PLAC4Q8WY50 150 aa6.63□□□□□ -1.35
RPAIN-206ENST00000539417 KRTAP13-4Q3LI77 160 aa6.61□□□□□ -1.35
RPAIN-206ENST00000539417 KRTAP4-7Q9BYR0 210 aa6.61□□□□□ -1.35
RPAIN-206ENST00000539417 A0A1B0GU33 70 aa6.6□□□□□ -1.35
RPAIN-206ENST00000539417 PMAIP1Q13794 54 aa6.59□□□□□ -1.36
RPAIN-206ENST00000539417 KRTAP6-3Q3LI67 103 aa6.53□□□□□ -1.36
RPAIN-206ENST00000539417 KMT2DO14686 5537 aa6.5□□□□□ -1.37
RPAIN-206ENST00000539417 PRO2289Q9P1D8 64 aa6.49□□□□□ -1.37
RPAIN-206ENST00000539417 LCE1DQ5T752 114 aa6.47□□□□□ -1.37
RPAIN-206ENST00000539417 MUC12Q9UKN1 5478 aa6.41□□□□□ -1.38
RPAIN-206ENST00000539417 KTN1-AS1Q86SY8 53 aa6.4□□□□□ -1.39
RPAIN-206ENST00000539417 A0A0D9SG42 100 aa6.38□□□□□ -1.39
RPAIN-206ENST00000539417 NEBP20929 6669 aa6.38□□□□□ -1.39
RPAIN-206ENST00000539417 K7ERS5 55 aa6.37□□□□□ -1.39
RPAIN-206ENST00000539417 KRTAP12-2P59991 146 aa6.36□□□□□ -1.39
RPAIN-206ENST00000539417 KRTAP10-7P60409 375 aaPredicted RBP6.35□□□□□ -1.39
RPAIN-206ENST00000539417 KRTAP4-9Q9BYQ8 210 aa6.34□□□□□ -1.39
RPAIN-206ENST00000539417 KRTAP5-9P26371 169 aa6.34□□□□□ -1.4
RPAIN-206ENST00000539417 KRTAP4-2Q9BYR5 136 aa6.33□□□□□ -1.4
RPAIN-206ENST00000539417 H3BS24 57 aa6.32□□□□□ -1.4
RPAIN-206ENST00000539417 MDN1Q9NU22 5596 aa6.29□□□□□ -1.4
RPAIN-206ENST00000539417 KRTAP10-12P60413 245 aa6.28□□□□□ -1.4
RPAIN-206ENST00000539417 KRTAP12-1P59990 96 aa6.27□□□□□ -1.41
RPAIN-206ENST00000539417 CAMK2N1Q7Z7J9 78 aa6.26□□□□□ -1.41
RPAIN-206ENST00000539417 SPINT4Q6UDR6 99 aa6.25□□□□□ -1.41
RPAIN-206ENST00000539417 KRTAP8-1Q8IUC2 63 aa6.24□□□□□ -1.41
RPAIN-206ENST00000539417 SPRR2FQ96RM1 72 aa6.21□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms