RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 DMBT1Q9UGM3 2413 aaPredicted RBP6.9□□□□□ -1.3
LDLR-203ENST00000535915 RYR3Q15413 4870 aa6.9□□□□□ -1.31
LDLR-203ENST00000535915 RYR1P21817 5038 aa6.87□□□□□ -1.31
LDLR-203ENST00000535915 A0A1B0GU33 70 aa6.86□□□□□ -1.31
LDLR-203ENST00000535915 H0YAA0 97 aa6.86□□□□□ -1.31
LDLR-203ENST00000535915 RPL37P61927 97 aaKnown RBP6.86□□□□□ -1.31
LDLR-203ENST00000535915 MYCBP2O75592 4640 aa6.85□□□□□ -1.31
LDLR-203ENST00000535915 XP32Q5T750 250 aa6.83□□□□□ -1.32
LDLR-203ENST00000535915 H1FX-AS1Q4G0G2 97 aa6.83□□□□□ -1.32
LDLR-203ENST00000535915 KRTAP17-1Q9BYP8 105 aa6.8□□□□□ -1.32
LDLR-203ENST00000535915 CRIPTQ9P021 101 aa6.8□□□□□ -1.32
LDLR-203ENST00000535915 KIAA1109Q2LD37 5005 aa6.77□□□□□ -1.33
LDLR-203ENST00000535915 K7ERS5 55 aa6.74□□□□□ -1.33
LDLR-203ENST00000535915 P0C880 135 aa6.74□□□□□ -1.33
LDLR-203ENST00000535915 MT1HL1P0DM35 61 aa6.74□□□□□ -1.33
LDLR-203ENST00000535915 KRTAP3-3Q9BYR6 98 aa6.73□□□□□ -1.33
LDLR-203ENST00000535915 S4R3F8 94 aa6.7□□□□□ -1.34
LDLR-203ENST00000535915 KRTAP10-6P60371 365 aaPredicted RBP6.65□□□□□ -1.34
LDLR-203ENST00000535915 LPAP08519 4548 aa6.65□□□□□ -1.34
LDLR-203ENST00000535915 SPINT4Q6UDR6 99 aa6.64□□□□□ -1.35
LDLR-203ENST00000535915 EPPK1P58107 5090 aaKnown RBP6.64□□□□□ -1.35
LDLR-203ENST00000535915 LRP2P98164 4655 aa6.63□□□□□ -1.35
LDLR-203ENST00000535915 KRTAP3-2Q9BYR7 98 aa6.61□□□□□ -1.35
LDLR-203ENST00000535915 TPRXLQ17RH7 258 aa6.6□□□□□ -1.35
LDLR-203ENST00000535915 KRTAP13-4Q3LI77 160 aa6.58□□□□□ -1.36
LDLR-203ENST00000535915 A0A0D9SG42 100 aa6.56□□□□□ -1.36
LDLR-203ENST00000535915 ABCA13Q86UQ4 5058 aa6.54□□□□□ -1.36
LDLR-203ENST00000535915 NDUFAF8A1L188 74 aa6.52□□□□□ -1.37
LDLR-203ENST00000535915 BIRC6Q9NR09 4857 aa6.51□□□□□ -1.37
LDLR-203ENST00000535915 KRTAP4-5Q9BYR2 181 aa6.49□□□□□ -1.37
LDLR-203ENST00000535915 C10orf95Q9H7T3 257 aa6.45□□□□□ -1.38
LDLR-203ENST00000535915 KRTAP15-1Q3LI76 137 aa6.41□□□□□ -1.38
LDLR-203ENST00000535915 KRTAP12-2P59991 146 aa6.37□□□□□ -1.39
LDLR-203ENST00000535915 SEC61BP60468 96 aaKnown RBP6.36□□□□□ -1.39
LDLR-203ENST00000535915 MUC17Q685J3 4493 aa6.36□□□□□ -1.39
LDLR-203ENST00000535915 M0QZ58 72 aa6.34□□□□□ -1.39
LDLR-203ENST00000535915 HERC2O95714 4834 aa6.33□□□□□ -1.4
LDLR-203ENST00000535915 J3QL48 77 aa6.33□□□□□ -1.4
LDLR-203ENST00000535915 KRTAP12-1P59990 96 aa6.33□□□□□ -1.4
LDLR-203ENST00000535915 KRTAP4-1Q9BYQ7 146 aa6.26□□□□□ -1.41
LDLR-203ENST00000535915 A0A0A0MQY5 61 aa6.25□□□□□ -1.41
LDLR-203ENST00000535915 R4GN34 69 aa6.23□□□□□ -1.41
LDLR-203ENST00000535915 PCLOQ9Y6V0 5065 aa6.16□□□□□ -1.42
LDLR-203ENST00000535915 LORP23490 312 aaPredicted RBP6.14□□□□□ -1.43
LDLR-203ENST00000535915 KRTAP19-2Q3LHN2 52 aa6.12□□□□□ -1.43
LDLR-203ENST00000535915 MUC2Q02817 5179 aa6.1□□□□□ -1.43
LDLR-203ENST00000535915 LUZP6Q538Z0 58 aa6.09□□□□□ -1.43
LDLR-203ENST00000535915 FLGP20930 4061 aaPredicted RBP6.03□□□□□ -1.44
LDLR-203ENST00000535915 HERC1Q15751 4861 aa5.99□□□□□ -1.45
LDLR-203ENST00000535915 PLAC4Q8WY50 150 aa5.98□□□□□ -1.45
LDLR-203ENST00000535915 HMCN2Q8NDA2 5059 aa5.93□□□□□ -1.46
LDLR-203ENST00000535915 CAMK2N1Q7Z7J9 78 aa5.91□□□□□ -1.46
LDLR-203ENST00000535915 FAT4Q6V0I7 4981 aa5.81□□□□□ -1.48
LDLR-203ENST00000535915 LCE2CQ5TA81 110 aa5.79□□□□□ -1.48
LDLR-203ENST00000535915 PP632Q6XCG6 107 aa5.73□□□□□ -1.49
LDLR-203ENST00000535915 M0R2T5 61 aa5.71□□□□□ -1.5
LDLR-203ENST00000535915 RNF213Q63HN8 5207 aa5.68□□□□□ -1.5
LDLR-203ENST00000535915 TNP1P09430 55 aa5.67□□□□□ -1.5
LDLR-203ENST00000535915 SPRR2GQ9BYE4 73 aa5.65□□□□□ -1.5
LDLR-203ENST00000535915 MT1HP80294 61 aa5.65□□□□□ -1.51
LDLR-203ENST00000535915 UBR4Q5T4S7 5183 aa5.65□□□□□ -1.51
LDLR-203ENST00000535915 KRTAP19-1Q8IUB9 90 aa5.62□□□□□ -1.51
LDLR-203ENST00000535915 KRTAP10-10P60014 251 aa5.56□□□□□ -1.52
LDLR-203ENST00000535915 KRTAP23-1A1A580 65 aa5.55□□□□□ -1.52
LDLR-203ENST00000535915 MT2AP02795 61 aa5.55□□□□□ -1.52
LDLR-203ENST00000535915 MT1FP04733 61 aa5.54□□□□□ -1.52
LDLR-203ENST00000535915 KRTAP9-8Q9BYQ0 159 aa5.5□□□□□ -1.53
LDLR-203ENST00000535915 KRTAP19-8Q3LI54 63 aa5.4□□□□□ -1.54
LDLR-203ENST00000535915 SPRR5A0A1B0GTR4 108 aa5.38□□□□□ -1.55
LDLR-203ENST00000535915 LCE3AQ5TA76 89 aa5.37□□□□□ -1.55
LDLR-203ENST00000535915 MT1BP07438 61 aa5.34□□□□□ -1.55
LDLR-203ENST00000535915 PRO2289Q9P1D8 64 aa5.32□□□□□ -1.56
LDLR-203ENST00000535915 KRTAP10-5P60370 271 aa5.3□□□□□ -1.56
LDLR-203ENST00000535915 MT1XP80297 61 aa5.29□□□□□ -1.56
LDLR-203ENST00000535915 KRTAP9-3Q9BYQ3 159 aa5.27□□□□□ -1.57
LDLR-203ENST00000535915 KRTAP8-1Q8IUC2 63 aa5.21□□□□□ -1.57
LDLR-203ENST00000535915 KRTAP10-12P60413 245 aa5.19□□□□□ -1.58
LDLR-203ENST00000535915 INE1O15225 51 aa5.16□□□□□ -1.58
LDLR-203ENST00000535915 KRTAP10-7P60409 375 aaPredicted RBP5.15□□□□□ -1.59
LDLR-203ENST00000535915 KRTAP12-3P60328 96 aa5.12□□□□□ -1.59
LDLR-203ENST00000535915 LCE2AQ5TA79 106 aaPredicted RBP5.11□□□□□ -1.59
LDLR-203ENST00000535915 LCE2BO14633 110 aa5.08□□□□□ -1.6
LDLR-203ENST00000535915 USH2AO75445 5202 aa5.02□□□□□ -1.61
LDLR-203ENST00000535915 KMT2DO14686 5537 aa4.93□□□□□ -1.62
LDLR-203ENST00000535915 KRTAP19-5Q3LI72 72 aa4.93□□□□□ -1.62
LDLR-203ENST00000535915 KRTAP4-8A0A0G2JLE6 195 aa4.85□□□□□ -1.63
LDLR-203ENST00000535915 KRTAP4-8Q9BYQ9 185 aa4.85□□□□□ -1.63
LDLR-203ENST00000535915 KRTAP9-2Q9BYQ4 174 aa4.83□□□□□ -1.64
LDLR-203ENST00000535915 LCE3CQ5T5A8 94 aa4.81□□□□□ -1.64
LDLR-203ENST00000535915 LCE2DQ5TA82 110 aaPredicted RBP4.78□□□□□ -1.64
LDLR-203ENST00000535915 SSPOA2VEC9 5147 aa4.72□□□□□ -1.65
LDLR-203ENST00000535915 KRTAP19-7Q3SYF9 63 aa4.71□□□□□ -1.66
LDLR-203ENST00000535915 FSIP2Q5CZC0 6907 aa4.71□□□□□ -1.66
LDLR-203ENST00000535915 KRTAP9-6A8MVA2 160 aa4.62□□□□□ -1.67
LDLR-203ENST00000535915 KRTAP4-7Q9BYR0 210 aa4.61□□□□□ -1.67
LDLR-203ENST00000535915 CRCT1Q9UGL9 99 aa4.6□□□□□ -1.67
LDLR-203ENST00000535915 KRTAP9-6A0A140TA67 174 aa4.6□□□□□ -1.67
LDLR-203ENST00000535915 MT1EP04732 61 aa4.58□□□□□ -1.68
LDLR-203ENST00000535915 KRTAP19-6Q3LI70 58 aa4.57□□□□□ -1.68
LDLR-203ENST00000535915 MT1LQ93083 61 aa4.57□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 80.7 ms