RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 H1FX-AS1Q4G0G2 97 aa10.66□□□□□ -0.7
VPS28-212ENST00000530836 KRTAP19-2Q3LHN2 52 aa10.65□□□□□ -0.7
VPS28-212ENST00000530836 SPTSSBQ8NFR3 76 aa10.64□□□□□ -0.71
VPS28-212ENST00000530836 LCE2CQ5TA81 110 aa10.6□□□□□ -0.71
VPS28-212ENST00000530836 V9GYY9 64 aa10.58□□□□□ -0.72
VPS28-212ENST00000530836 LCE2AQ5TA79 106 aaPredicted RBP10.56□□□□□ -0.72
VPS28-212ENST00000530836 S4R3F8 94 aa10.55□□□□□ -0.72
VPS28-212ENST00000530836 Q1T7F1 81 aa10.55□□□□□ -0.72
VPS28-212ENST00000530836 LCA10Q71F78 164 aa10.49□□□□□ -0.73
VPS28-212ENST00000530836 LINC01558Q9Y6Z2 57 aa10.46□□□□□ -0.74
VPS28-212ENST00000530836 MT1HP80294 61 aa10.43□□□□□ -0.74
VPS28-212ENST00000530836 KRTAP3-3Q9BYR6 98 aa10.43□□□□□ -0.74
VPS28-212ENST00000530836 FLGP20930 4061 aaPredicted RBP10.37□□□□□ -0.75
VPS28-212ENST00000530836 CSAG1Q6PB30 78 aa10.36□□□□□ -0.75
VPS28-212ENST00000530836 PRR15LQ9BU68 103 aa10.34□□□□□ -0.75
VPS28-212ENST00000530836 SEC61GP60059 68 aa10.33□□□□□ -0.76
VPS28-212ENST00000530836 A0A1B0GU69 56 aa10.32□□□□□ -0.76
VPS28-212ENST00000530836 PSPHP1O15172 72 aa10.29□□□□□ -0.76
VPS28-212ENST00000530836 M0R2T5 61 aa10.26□□□□□ -0.77
VPS28-212ENST00000530836 Q5VV11 94 aa10.22□□□□□ -0.77
VPS28-212ENST00000530836 H0YAA0 97 aa10.16□□□□□ -0.78
VPS28-212ENST00000530836 KRTAP10-6P60371 365 aaPredicted RBP10.16□□□□□ -0.78
VPS28-212ENST00000530836 LORP23490 312 aaPredicted RBP10.15□□□□□ -0.79
VPS28-212ENST00000530836 ADM2Q7Z4H4 148 aa10.06□□□□□ -0.8
VPS28-212ENST00000530836 KRTAP3-2Q9BYR7 98 aa10.04□□□□□ -0.8
VPS28-212ENST00000530836 A6NED7 52 aa10.03□□□□□ -0.8
VPS28-212ENST00000530836 A0A1B0GU33 70 aa10.02□□□□□ -0.81
VPS28-212ENST00000530836 UQCR11O14957 56 aa10.02□□□□□ -0.81
VPS28-212ENST00000530836 KRTAP9-8Q9BYQ0 159 aa9.96□□□□□ -0.82
VPS28-212ENST00000530836 P0C880 135 aa9.95□□□□□ -0.82
VPS28-212ENST00000530836 KRTAP9-2Q9BYQ4 174 aa9.89□□□□□ -0.83
VPS28-212ENST00000530836 MIR22HGQ0VDD5 57 aa9.88□□□□□ -0.83
VPS28-212ENST00000530836 LCE2DQ5TA82 110 aaPredicted RBP9.88□□□□□ -0.83
VPS28-212ENST00000530836 BRK1Q8WUW1 75 aa9.86□□□□□ -0.83
VPS28-212ENST00000530836 CDC42SE1Q9NRR8 79 aa9.86□□□□□ -0.83
VPS28-212ENST00000530836 SPATA8Q6RVD6 105 aa9.85□□□□□ -0.83
VPS28-212ENST00000530836 MT2AP02795 61 aa9.84□□□□□ -0.83
VPS28-212ENST00000530836 M0QZ58 72 aa9.82□□□□□ -0.84
VPS28-212ENST00000530836 MT1FP04733 61 aa9.77□□□□□ -0.85
VPS28-212ENST00000530836 CRIPTQ9P021 101 aa9.75□□□□□ -0.85
VPS28-212ENST00000530836 KRTAP10-10P60014 251 aa9.74□□□□□ -0.85
VPS28-212ENST00000530836 R4GN34 69 aa9.74□□□□□ -0.85
VPS28-212ENST00000530836 KRTAP13-4Q3LI77 160 aa9.72□□□□□ -0.85
VPS28-212ENST00000530836 SVIPQ8NHG7 77 aa9.68□□□□□ -0.86
VPS28-212ENST00000530836 PRO0628Q9UI54 55 aa9.67□□□□□ -0.86
VPS28-212ENST00000530836 A8MU10 97 aa9.65□□□□□ -0.86
VPS28-212ENST00000530836 KRTAP9-3Q9BYQ3 159 aa9.63□□□□□ -0.87
VPS28-212ENST00000530836 A0A0D9SG42 100 aa9.56□□□□□ -0.88
VPS28-212ENST00000530836 FSIP2Q5CZC0 6907 aa9.54□□□□□ -0.88
VPS28-212ENST00000530836 K7ERS5 55 aa9.52□□□□□ -0.89
VPS28-212ENST00000530836 LINC01554Q52M75 96 aa9.49□□□□□ -0.89
VPS28-212ENST00000530836 LCE2BO14633 110 aa9.48□□□□□ -0.89
VPS28-212ENST00000530836 SPRR2GQ9BYE4 73 aa9.48□□□□□ -0.89
VPS28-212ENST00000530836 A6NN06 94 aa9.45□□□□□ -0.9
VPS28-212ENST00000530836 USH2AO75445 5202 aa9.44□□□□□ -0.9
VPS28-212ENST00000530836 CRCT1Q9UGL9 99 aa9.42□□□□□ -0.9
VPS28-212ENST00000530836 KRTAP9-6A0A140TA67 174 aa9.4□□□□□ -0.9
VPS28-212ENST00000530836 KRTAP12-1P59990 96 aa9.4□□□□□ -0.9
VPS28-212ENST00000530836 KRTAP19-1Q8IUB9 90 aa9.4□□□□□ -0.9
VPS28-212ENST00000530836 SPINT4Q6UDR6 99 aa9.37□□□□□ -0.91
VPS28-212ENST00000530836 PMAIP1Q13794 54 aa9.35□□□□□ -0.91
VPS28-212ENST00000530836 KRTAP12-2P59991 146 aa9.34□□□□□ -0.91
VPS28-212ENST00000530836 SSPOA2VEC9 5147 aa9.25□□□□□ -0.93
VPS28-212ENST00000530836 KRTAP19-8Q3LI54 63 aa9.22□□□□□ -0.93
VPS28-212ENST00000530836 PLAC4Q8WY50 150 aa9.2□□□□□ -0.94
VPS28-212ENST00000530836 CAMK2N1Q7Z7J9 78 aa9.12□□□□□ -0.95
VPS28-212ENST00000530836 MT1BP07438 61 aa9.08□□□□□ -0.96
VPS28-212ENST00000530836 KRTAP19-6Q3LI70 58 aa9.07□□□□□ -0.96
VPS28-212ENST00000530836 ROMO1P60602 79 aa9.05□□□□□ -0.96
VPS28-212ENST00000530836 FCGBPQ9Y6R7 5405 aaPredicted RBP8.99□□□□□ -0.97
VPS28-212ENST00000530836 KTN1-AS1Q86SY8 53 aa8.96□□□□□ -0.98
VPS28-212ENST00000530836 C10orf95Q9H7T3 257 aa8.87□□□□□ -0.99
VPS28-212ENST00000530836 PRO2289Q9P1D8 64 aa8.8□□□□□ -1
VPS28-212ENST00000530836 KRTAP10-5P60370 271 aa8.79□□□□□ -1
VPS28-212ENST00000530836 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.75□□□□□ -1.01
VPS28-212ENST00000530836 MT1XP80297 61 aa8.75□□□□□ -1.01
VPS28-212ENST00000530836 KRTAP25-1Q3LHN0 102 aa8.74□□□□□ -1.01
VPS28-212ENST00000530836 TNP1P09430 55 aa8.69□□□□□ -1.02
VPS28-212ENST00000530836 PRAC1Q96KF2 57 aa8.66□□□□□ -1.02
VPS28-212ENST00000530836 MACF1Q9UPN3 7388 aaKnown RBP8.62□□□□□ -1.03
VPS28-212ENST00000530836 KRTAP9-7A8MTY7 169 aa8.5□□□□□ -1.05
VPS28-212ENST00000530836 KRTAP23-1A1A580 65 aa8.48□□□□□ -1.05
VPS28-212ENST00000530836 PP632Q6XCG6 107 aa8.47□□□□□ -1.05
VPS28-212ENST00000530836 SYNE2Q8WXH0 6885 aaKnown RBP8.46□□□□□ -1.05
VPS28-212ENST00000530836 KRTAP10-7P60409 375 aaPredicted RBP8.37□□□□□ -1.07
VPS28-212ENST00000530836 KRTAP10-12P60413 245 aa8.34□□□□□ -1.07
VPS28-212ENST00000530836 KRTAP6-3Q3LI67 103 aa8.33□□□□□ -1.08
VPS28-212ENST00000530836 LCE3AQ5TA76 89 aa8.25□□□□□ -1.09
VPS28-212ENST00000530836 KMT2DO14686 5537 aa8.2□□□□□ -1.1
VPS28-212ENST00000530836 KRTAP5-9P26371 169 aa8.14□□□□□ -1.11
VPS28-212ENST00000530836 KRTAP8-1Q8IUC2 63 aa8.14□□□□□ -1.11
VPS28-212ENST00000530836 KRTAP4-8A0A0G2JLE6 195 aa8.11□□□□□ -1.11
VPS28-212ENST00000530836 KRTAP4-8Q9BYQ9 185 aa8.11□□□□□ -1.11
VPS28-212ENST00000530836 MUC12Q9UKN1 5478 aa8□□□□□ -1.13
VPS28-212ENST00000530836 SPRR2FQ96RM1 72 aa7.98□□□□□ -1.13
VPS28-212ENST00000530836 KRTAP12-3P60328 96 aa7.96□□□□□ -1.13
VPS28-212ENST00000530836 KRTAP19-5Q3LI72 72 aa7.9□□□□□ -1.14
VPS28-212ENST00000530836 NEBP20929 6669 aa7.89□□□□□ -1.15
VPS28-212ENST00000530836 MDN1Q9NU22 5596 aa7.88□□□□□ -1.15
VPS28-212ENST00000530836 KRTAP15-1Q3LI76 137 aa7.81□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 68.3 ms