RNA–Protein interactions for RNA: ENST00000530304.5

PCF11-203, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 1 (best)

Gene PCF11, Length 2,649 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-203ENST00000530304 RPL37P61927 97 aaKnown RBP10.05□□□□□ -0.8
PCF11-203ENST00000530304 Q5VSD8 79 aa10.03□□□□□ -0.8
PCF11-203ENST00000530304 KRTAP3-3Q9BYR6 98 aa10.03□□□□□ -0.8
PCF11-203ENST00000530304 XP32Q5T750 250 aa10□□□□□ -0.81
PCF11-203ENST00000530304 KRTAP10-6P60371 365 aaPredicted RBP9.96□□□□□ -0.82
PCF11-203ENST00000530304 MYCBP2O75592 4640 aa9.95□□□□□ -0.82
PCF11-203ENST00000530304 K7ERS5 55 aa9.95□□□□□ -0.82
PCF11-203ENST00000530304 DMBT1Q9UGM3 2413 aaPredicted RBP9.94□□□□□ -0.82
PCF11-203ENST00000530304 KRTAP25-1Q3LHN0 102 aa9.91□□□□□ -0.82
PCF11-203ENST00000530304 S4R3F8 94 aa9.9□□□□□ -0.82
PCF11-203ENST00000530304 KRTAP3-2Q9BYR7 98 aa9.88□□□□□ -0.83
PCF11-203ENST00000530304 H3BS24 57 aa9.86□□□□□ -0.83
PCF11-203ENST00000530304 KRTAP13-4Q3LI77 160 aa9.86□□□□□ -0.83
PCF11-203ENST00000530304 KRTAP17-1Q9BYP8 105 aa9.86□□□□□ -0.83
PCF11-203ENST00000530304 RYR1P21817 5038 aa9.83□□□□□ -0.84
PCF11-203ENST00000530304 A0A0D9SG42 100 aa9.79□□□□□ -0.84
PCF11-203ENST00000530304 CRIPTQ9P021 101 aa9.78□□□□□ -0.84
PCF11-203ENST00000530304 RYR3Q15413 4870 aa9.78□□□□□ -0.84
PCF11-203ENST00000530304 MT1HL1P0DM35 61 aa9.77□□□□□ -0.85
PCF11-203ENST00000530304 P0C880 135 aa9.75□□□□□ -0.85
PCF11-203ENST00000530304 ROMO1P60602 79 aa9.75□□□□□ -0.85
PCF11-203ENST00000530304 LPAP08519 4548 aa9.73□□□□□ -0.85
PCF11-203ENST00000530304 KIAA1109Q2LD37 5005 aa9.67□□□□□ -0.86
PCF11-203ENST00000530304 LRP2P98164 4655 aa9.62□□□□□ -0.87
PCF11-203ENST00000530304 TPRXLQ17RH7 258 aa9.58□□□□□ -0.88
PCF11-203ENST00000530304 KRTAP12-2P59991 146 aa9.55□□□□□ -0.88
PCF11-203ENST00000530304 KRTAP12-1P59990 96 aa9.47□□□□□ -0.89
PCF11-203ENST00000530304 SPINT4Q6UDR6 99 aa9.46□□□□□ -0.89
PCF11-203ENST00000530304 C10orf95Q9H7T3 257 aa9.43□□□□□ -0.9
PCF11-203ENST00000530304 M0QZ58 72 aa9.42□□□□□ -0.9
PCF11-203ENST00000530304 ABCA13Q86UQ4 5058 aa9.42□□□□□ -0.9
PCF11-203ENST00000530304 EPPK1P58107 5090 aaKnown RBP9.41□□□□□ -0.9
PCF11-203ENST00000530304 KRTAP4-5Q9BYR2 181 aa9.31□□□□□ -0.92
PCF11-203ENST00000530304 MUC17Q685J3 4493 aa9.23□□□□□ -0.93
PCF11-203ENST00000530304 SEC61BP60468 96 aaKnown RBP9.21□□□□□ -0.93
PCF11-203ENST00000530304 R4GN34 69 aa9.2□□□□□ -0.94
PCF11-203ENST00000530304 KRTAP4-1Q9BYQ7 146 aa9.13□□□□□ -0.95
PCF11-203ENST00000530304 KRTAP15-1Q3LI76 137 aa9.1□□□□□ -0.95
PCF11-203ENST00000530304 LORP23490 312 aaPredicted RBP9.1□□□□□ -0.95
PCF11-203ENST00000530304 NDUFAF8A1L188 74 aa9.04□□□□□ -0.96
PCF11-203ENST00000530304 J3QL48 77 aa9.01□□□□□ -0.97
PCF11-203ENST00000530304 KRTAP19-2Q3LHN2 52 aa8.98□□□□□ -0.97
PCF11-203ENST00000530304 HERC2O95714 4834 aa8.9□□□□□ -0.98
PCF11-203ENST00000530304 MUC2Q02817 5179 aa8.83□□□□□ -1
PCF11-203ENST00000530304 CAMK2N1Q7Z7J9 78 aa8.73□□□□□ -1.01
PCF11-203ENST00000530304 FLGP20930 4061 aaPredicted RBP8.73□□□□□ -1.01
PCF11-203ENST00000530304 BIRC6Q9NR09 4857 aa8.67□□□□□ -1.02
PCF11-203ENST00000530304 PLAC4Q8WY50 150 aa8.66□□□□□ -1.02
PCF11-203ENST00000530304 PP632Q6XCG6 107 aa8.6□□□□□ -1.03
PCF11-203ENST00000530304 PCLOQ9Y6V0 5065 aa8.55□□□□□ -1.04
PCF11-203ENST00000530304 HERC1Q15751 4861 aa8.48□□□□□ -1.05
PCF11-203ENST00000530304 HMCN2Q8NDA2 5059 aa8.43□□□□□ -1.06
PCF11-203ENST00000530304 TNP1P09430 55 aa8.41□□□□□ -1.06
PCF11-203ENST00000530304 LCE2CQ5TA81 110 aa8.41□□□□□ -1.06
PCF11-203ENST00000530304 FAT4Q6V0I7 4981 aa8.37□□□□□ -1.07
PCF11-203ENST00000530304 KRTAP23-1A1A580 65 aa8.31□□□□□ -1.08
PCF11-203ENST00000530304 SPRR2GQ9BYE4 73 aa8.3□□□□□ -1.08
PCF11-203ENST00000530304 KRTAP19-1Q8IUB9 90 aa8.26□□□□□ -1.09
PCF11-203ENST00000530304 LUZP6Q538Z0 58 aa8.24□□□□□ -1.09
PCF11-203ENST00000530304 M0R2T5 61 aa8.22□□□□□ -1.09
PCF11-203ENST00000530304 MT1HP80294 61 aa8.17□□□□□ -1.1
PCF11-203ENST00000530304 RNF213Q63HN8 5207 aa8.08□□□□□ -1.12
PCF11-203ENST00000530304 MT1FP04733 61 aa8.07□□□□□ -1.12
PCF11-203ENST00000530304 MT2AP02795 61 aa8.06□□□□□ -1.12
PCF11-203ENST00000530304 KRTAP10-10P60014 251 aa8.05□□□□□ -1.12
PCF11-203ENST00000530304 UBR4Q5T4S7 5183 aa8.05□□□□□ -1.12
PCF11-203ENST00000530304 SPRR5A0A1B0GTR4 108 aa8.04□□□□□ -1.12
PCF11-203ENST00000530304 A0A0A0MQY5 61 aa8.01□□□□□ -1.13
PCF11-203ENST00000530304 KRTAP9-8Q9BYQ0 159 aa8.01□□□□□ -1.13
PCF11-203ENST00000530304 LCE3AQ5TA76 89 aa7.97□□□□□ -1.13
PCF11-203ENST00000530304 KRTAP19-8Q3LI54 63 aa7.9□□□□□ -1.14
PCF11-203ENST00000530304 MT1BP07438 61 aa7.82□□□□□ -1.16
PCF11-203ENST00000530304 KRTAP10-5P60370 271 aa7.8□□□□□ -1.16
PCF11-203ENST00000530304 MT1XP80297 61 aa7.78□□□□□ -1.16
PCF11-203ENST00000530304 KRTAP8-1Q8IUC2 63 aa7.77□□□□□ -1.17
PCF11-203ENST00000530304 KRTAP9-3Q9BYQ3 159 aa7.66□□□□□ -1.18
PCF11-203ENST00000530304 KRTAP10-12P60413 245 aa7.64□□□□□ -1.19
PCF11-203ENST00000530304 KRTAP12-3P60328 96 aa7.59□□□□□ -1.19
PCF11-203ENST00000530304 KRTAP10-7P60409 375 aaPredicted RBP7.58□□□□□ -1.2
PCF11-203ENST00000530304 PRO2289Q9P1D8 64 aa7.47□□□□□ -1.21
PCF11-203ENST00000530304 LCE2BO14633 110 aa7.35□□□□□ -1.23
PCF11-203ENST00000530304 KRTAP19-5Q3LI72 72 aa7.26□□□□□ -1.25
PCF11-203ENST00000530304 USH2AO75445 5202 aa7.24□□□□□ -1.25
PCF11-203ENST00000530304 KMT2DO14686 5537 aa7.18□□□□□ -1.26
PCF11-203ENST00000530304 INE1O15225 51 aa7.16□□□□□ -1.26
PCF11-203ENST00000530304 LCE3CQ5T5A8 94 aa7.15□□□□□ -1.26
PCF11-203ENST00000530304 LCE2AQ5TA79 106 aaPredicted RBP7.14□□□□□ -1.27
PCF11-203ENST00000530304 KRTAP4-8A0A0G2JLE6 195 aa7.11□□□□□ -1.27
PCF11-203ENST00000530304 KRTAP4-8Q9BYQ9 185 aa7.11□□□□□ -1.27
PCF11-203ENST00000530304 KRTAP19-7Q3SYF9 63 aa6.93□□□□□ -1.3
PCF11-203ENST00000530304 KRTAP9-6A8MVA2 160 aa6.91□□□□□ -1.3
PCF11-203ENST00000530304 KRTAP4-7Q9BYR0 210 aa6.82□□□□□ -1.32
PCF11-203ENST00000530304 MT1LQ93083 61 aa6.73□□□□□ -1.33
PCF11-203ENST00000530304 MT1EP04732 61 aa6.72□□□□□ -1.33
PCF11-203ENST00000530304 KRTAP19-4Q3LI73 84 aa6.71□□□□□ -1.33
PCF11-203ENST00000530304 SSPOA2VEC9 5147 aa6.71□□□□□ -1.33
PCF11-203ENST00000530304 KRTAP2-3P0C7H8 128 aa6.67□□□□□ -1.34
PCF11-203ENST00000530304 KRTAP2-4Q9BYR9 128 aa6.67□□□□□ -1.34
PCF11-203ENST00000530304 KRTAP2-1Q9BYU5 128 aa6.67□□□□□ -1.34
PCF11-203ENST00000530304 KRTAP19-6Q3LI70 58 aa6.56□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms